CX301088

Overview
NameCX301088
Unique NameCX301088
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length254
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301088 vs. ExPASy Swiss-Prot
Match: YSL3_ARATH (Metal-nicotianamine transporter YSL3 OS=Arabidopsis thaliana GN=YSL3 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.756e-39
Identity = 73/84 (86.90%), Postives = 78/84 (92.86%), Query Frame = 3
Query:    3 TAIGCVVAPLTFFLFYKAFDVGNPDGEYKAPYAIVYRNMAILGVEGFSALPQHCLQLCYGFFAFAIAANLLRDLSPKKIAKWIP 254
            TAIGCVVAPLTFFLFYKAFDVGN +GEYKAPYA+VYRNMAILGVEGFSALPQHCLQLCYGFFAFA+AANL+RD  P KI  W+P
Sbjct:  510 TAIGCVVAPLTFFLFYKAFDVGNQEGEYKAPYALVYRNMAILGVEGFSALPQHCLQLCYGFFAFAVAANLVRDRLPDKIGNWVP 593          
BLAST of CX301088 vs. ExPASy Swiss-Prot
Match: YSL2_ARATH (Metal-nicotianamine transporter YSL2 OS=Arabidopsis thaliana GN=YSL2 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.336e-36
Identity = 69/84 (82.14%), Postives = 77/84 (91.67%), Query Frame = 3
Query:    3 TAIGCVVAPLTFFLFYKAFDVGNPDGEYKAPYAIVYRNMAILGVEGFSALPQHCLQLCYGFFAFAIAANLLRDLSPKKIAKWIP 254
            TAIGCVVAPLTFFLFYKAFDVGN +GEYKAPYA++YRNMAI+GV+G SALP+HCL+LCYGFFAFA+AANL RDL P K  KWIP
Sbjct:  502 TAIGCVVAPLTFFLFYKAFDVGNQNGEYKAPYAMIYRNMAIIGVQGPSALPKHCLELCYGFFAFAVAANLARDLLPDKPGKWIP 585          
BLAST of CX301088 vs. ExPASy Swiss-Prot
Match: YSL9_ORYSJ (Probable metal-nicotianamine transporter YSL9 OS=Oryza sativa subsp. japonica GN=YSL9 PE=2 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 1.745e-36
Identity = 65/84 (77.38%), Postives = 75/84 (89.29%), Query Frame = 3
Query:    3 TAIGCVVAPLTFFLFYKAFDVGNPDGEYKAPYAIVYRNMAILGVEGFSALPQHCLQLCYGFFAFAIAANLLRDLSPKKIAKWIP 254
            T +GCV++PLTFFLFY AFD+GNP+G +KAPYA+VYRNMAILGVEGFSALPQHCLQLCYGFF FA+AANL RDL P K  +W+P
Sbjct:  522 TVMGCVISPLTFFLFYSAFDIGNPEGYWKAPYALVYRNMAILGVEGFSALPQHCLQLCYGFFGFAVAANLTRDLCPPKYGRWVP 605          
BLAST of CX301088 vs. ExPASy Swiss-Prot
Match: YSL1_ARATH (Metal-nicotianamine transporter YSL1 OS=Arabidopsis thaliana GN=YSL1 PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 2.785e-34
Identity = 59/84 (70.24%), Postives = 76/84 (90.48%), Query Frame = 3
Query:    3 TAIGCVVAPLTFFLFYKAFDVGNPDGEYKAPYAIVYRNMAILGVEGFSALPQHCLQLCYGFFAFAIAANLLRDLSPKKIAKWIP 254
            T +GC+V PL+FFLFYKAFD+GNP+GE+KAPYA++YRNMAILGV+GFSALP HCLQ+CYGFF FA+  N++RDL+P KI +++P
Sbjct:  512 TVVGCIVTPLSFFLFYKAFDIGNPNGEFKAPYALIYRNMAILGVQGFSALPLHCLQMCYGFFGFAVLVNVVRDLTPAKIGRFMP 595          
BLAST of CX301088 vs. ExPASy Swiss-Prot
Match: YSL16_ORYSJ (Probable metal-nicotianamine transporter YSL16 OS=Oryza sativa subsp. japonica GN=YSL16 PE=2 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 5.253e-33
Identity = 61/84 (72.62%), Postives = 75/84 (89.29%), Query Frame = 3
Query:    3 TAIGCVVAPLTFFLFYKAFDVGNPDGEYKAPYAIVYRNMAILGVEGFSALPQHCLQLCYGFFAFAIAANLLRDLSPKKIAKWIP 254
            T +GCVVAPLTFFLFYKAFDVG+P+G +KAPYA++YRNMAI+GVEGFSALP+HCLQLC GFFAFA+ ANL RD  P++  +++P
Sbjct:  513 TLMGCVVAPLTFFLFYKAFDVGDPNGYWKAPYALIYRNMAIIGVEGFSALPRHCLQLCAGFFAFAVLANLARDFLPRRYGRYMP 596          
BLAST of CX301088 vs. ExPASy Swiss-Prot
Match: YSL2_ORYSJ (Metal-nicotianamine transporter YSL2 OS=Oryza sativa subsp. japonica GN=YSL2 PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 1.690e-31
Identity = 57/84 (67.86%), Postives = 73/84 (86.90%), Query Frame = 3
Query:    3 TAIGCVVAPLTFFLFYKAFDVGNPDGEYKAPYAIVYRNMAILGVEGFSALPQHCLQLCYGFFAFAIAANLLRDLSPKKIAKWIP 254
            TA+GC++APLTF LFYKAFD+GNPDG +KAPYA+++RNMAILGVEGFSALP+HCL+L  GFFAF++  NL+RD  P+K   ++P
Sbjct:  512 TAMGCIIAPLTFLLFYKAFDIGNPDGYWKAPYALIFRNMAILGVEGFSALPKHCLELSAGFFAFSVLINLMRDFLPRKYRDYVP 595          
BLAST of CX301088 vs. ExPASy Swiss-Prot
Match: YSL6_ARATH (Probable metal-nicotianamine transporter YSL6 OS=Arabidopsis thaliana GN=YSL6 PE=2 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 1.430e-30
Identity = 55/84 (65.48%), Postives = 74/84 (88.10%), Query Frame = 3
Query:    3 TAIGCVVAPLTFFLFYKAFDVGNPDGEYKAPYAIVYRNMAILGVEGFSALPQHCLQLCYGFFAFAIAANLLRDLSPKKIAKWIP 254
            TA+GCV+APLTF+LF+ AFD+G+P+G YKAPYA+++R MAILG+EGF+ LP+HCL LCYGFF  A+  NLLRD++P KI+++IP
Sbjct:  512 TAMGCVIAPLTFWLFWTAFDIGDPNGPYKAPYAVIFREMAILGIEGFAELPKHCLALCYGFFIAALIVNLLRDITPPKISQFIP 595          
BLAST of CX301088 vs. ExPASy Swiss-Prot
Match: YSL6_ORYSJ (Probable metal-nicotianamine transporter YSL6 OS=Oryza sativa subsp. japonica GN=YSL6 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.187e-30
Identity = 55/84 (65.48%), Postives = 72/84 (85.71%), Query Frame = 3
Query:    3 TAIGCVVAPLTFFLFYKAFDVGNPDGEYKAPYAIVYRNMAILGVEGFSALPQHCLQLCYGFFAFAIAANLLRDLSPKKIAKWIP 254
            T +GC++APLTF+L++ AFD+GNPDG +KAPYA++YR M+ILGVEGFSALPQHCL +C  FF  AI  NLLRD++PK ++K+IP
Sbjct:  514 TTLGCIIAPLTFWLYWTAFDIGNPDGMFKAPYAVIYREMSILGVEGFSALPQHCLAICSVFFVAAILINLLRDVTPKSVSKFIP 597          
BLAST of CX301088 vs. ExPASy Swiss-Prot
Match: YSL4_ARATH (Probable metal-nicotianamine transporter YSL4 OS=Arabidopsis thaliana GN=YSL4 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.187e-30
Identity = 56/84 (66.67%), Postives = 72/84 (85.71%), Query Frame = 3
Query:    3 TAIGCVVAPLTFFLFYKAFDVGNPDGEYKAPYAIVYRNMAILGVEGFSALPQHCLQLCYGFFAFAIAANLLRDLSPKKIAKWIP 254
            TA+GC++APLTF+LF+ AFD+G+PDG YKAPYA++YR MAILGVEGF+ LP+HCL LC GFF  A+  NL+RD++P KI+K IP
Sbjct:  509 TAMGCIIAPLTFWLFWTAFDIGDPDGLYKAPYAVIYREMAILGVEGFAKLPKHCLALCCGFFIAALIVNLIRDMTPPKISKLIP 592          
BLAST of CX301088 vs. ExPASy Swiss-Prot
Match: YSL15_ORYSJ (Iron-phytosiderophore transporter YSL15 OS=Oryza sativa subsp. japonica GN=YSL15 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.698e-29
Identity = 55/84 (65.48%), Postives = 67/84 (79.76%), Query Frame = 3
Query:    3 TAIGCVVAPLTFFLFYKAFDVGNPDGEYKAPYAIVYRNMAILGVEGFSALPQHCLQLCYGFFAFAIAANLLRDLSPKKIAKWIP 254
            T IGC +APLTF LFY+AFD+GNPDG +KAPYA++YRNMAILG+EG SALP+HCL L  GFFAFA+  N+ RD  P +  K +P
Sbjct:  510 TGIGCFIAPLTFMLFYRAFDIGNPDGYWKAPYALIYRNMAILGIEGISALPKHCLSLSVGFFAFAVLTNVARDALPARYKKLVP 593          
The following BLAST results are available for this feature:
BLAST of CX301088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
YSL3_ARATH3.756e-3986.90Metal-nicotianamine transporter YSL3 OS=Arabidopsi... [more]
YSL2_ARATH1.336e-3682.14Metal-nicotianamine transporter YSL2 OS=Arabidopsi... [more]
YSL9_ORYSJ1.745e-3677.38Probable metal-nicotianamine transporter YSL9 OS=O... [more]
YSL1_ARATH2.785e-3470.24Metal-nicotianamine transporter YSL1 OS=Arabidopsi... [more]
YSL16_ORYSJ5.253e-3372.62Probable metal-nicotianamine transporter YSL16 OS=... [more]
YSL2_ORYSJ1.690e-3167.86Metal-nicotianamine transporter YSL2 OS=Oryza sati... [more]
YSL6_ARATH1.430e-3065.48Probable metal-nicotianamine transporter YSL6 OS=A... [more]
YSL6_ORYSJ3.187e-3065.48Probable metal-nicotianamine transporter YSL6 OS=O... [more]
YSL4_ARATH3.187e-3066.67Probable metal-nicotianamine transporter YSL4 OS=A... [more]
YSL15_ORYSJ2.698e-2965.48Iron-phytosiderophore transporter YSL15 OS=Oryza s... [more]

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Properties
Property NameValue
Genbank descriptionC08005F04SK PhyRootSw1 Citrus sinensis cDNA clone C08005F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301088 ID=CX301088; Name=CX301088; organism=Citrus sinensis; type=EST; length=254bp
GGACTGCCATAGGTTGCGTTGTAGCCCCTCTTACATTCTTTCTCTTCTAC
AAGGCTTTTGATGTTGGTAACCCAGATGGTGAATACAAAGCTCCTTATGC
TATCGTCTACCGAAACATGGCAATTCTTGGTGTTGAGGGCTTCTCTGCCC
TGCCTCAGCATTGTTTACAGCTCTGTTATGGGTTTTTTGCCTTTGCCATT
GCGGCAAACTTACTAAGAGATCTTTCTCCTAAGAAAATAGCAAAATGGAT
TCCC
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