CX300934

Overview
NameCX300934
Unique NameCX300934
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length385
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300934 vs. ExPASy Swiss-Prot
Match: RL7A2_ARATH (60S ribosomal protein L7a-2 OS=Arabidopsis thaliana GN=RPL7AB PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 1.659e-42
Identity = 84/126 (66.67%), Postives = 104/126 (82.54%), Query Frame = 2
Query:    8 RDLSRFVRWPKNVRLQRQKKILTQRLKVPPAINQFRRTLDKNQAAELFKLLVKYQPENKEAKKIRLEAKAAAIANKEPVQTVVPPPTIKFGLKHVTSLIEKKKAKLVVIAHDVDPIELVVWLPALC 385
            +DLSR+++WPK++RLQRQK+IL QRLKVPPA+NQF +TLDKN A  LFK+L+KY+PE+K AKK RL  KA A A  +P ++   P  +K+GL HVT LIE+ KA+LVVIAHDVDPIELVVWLPALC
Sbjct:   40 KDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPEDKAAKKERLLNKAQAEAEGKPAES-KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALC 164          
BLAST of CX300934 vs. ExPASy Swiss-Prot
Match: RL7A1_ARATH (60S ribosomal protein L7a-1 OS=Arabidopsis thaliana GN=RPL7AA PE=2 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 2.167e-42
Identity = 84/126 (66.67%), Postives = 104/126 (82.54%), Query Frame = 2
Query:    8 RDLSRFVRWPKNVRLQRQKKILTQRLKVPPAINQFRRTLDKNQAAELFKLLVKYQPENKEAKKIRLEAKAAAIANKEPVQTVVPPPTIKFGLKHVTSLIEKKKAKLVVIAHDVDPIELVVWLPALC 385
            +DLSR+++WPK++RLQRQK+IL QRLKVPPA+NQF +TLDKN A  LFK+L+KY+PE+K AKK RL  KA A A  +P ++   P  +K+GL HVT LIE+ KA+LVVIAHDVDPIELVVWLPALC
Sbjct:   41 KDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSLFKVLLKYRPEDKAAKKERLVKKAQAEAEGKPSES-KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALC 165          
BLAST of CX300934 vs. ExPASy Swiss-Prot
Match: RL7A_ORYSJ (60S ribosomal protein L7a OS=Oryza sativa subsp. japonica GN=RPL7A PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 5.337e-41
Identity = 84/126 (66.67%), Postives = 101/126 (80.16%), Query Frame = 2
Query:    8 RDLSRFVRWPKNVRLQRQKKILTQRLKVPPAINQFRRTLDKNQAAELFKLLVKYQPENKEAKKIRLEAKAAAIANKEPVQTVVPPPTIKFGLKHVTSLIEKKKAKLVVIAHDVDPIELVVWLPALC 385
            +DL RFV+WPK VR+QRQ++IL QRLKVPPA+NQF RTLDKN A  LFK+L+KY+PE+K AKK RL  +A A A  + V+    P  +K+GL HVT LIE+ KA+LVVIAHDVDPIELVVWLPALC
Sbjct:   42 KDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGKTVE-AKKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALC 166          
BLAST of CX300934 vs. ExPASy Swiss-Prot
Match: RL8_SCHPO (60S ribosomal protein L8 OS=Schizosaccharomyces pombe GN=rpl8 PE=1 SV=3)

HSP 1 Score: 159.073 bits (401), Expect = 6.524e-39
Identity = 82/127 (64.57%), Postives = 100/127 (78.74%), Query Frame = 2
Query:    8 RDLSRFVRWPKNVRLQRQKKILTQRLKVPPAINQFRRTLDKNQAAELFKLLVKYQPENKEAKKIRLEAKAAAIANKEPVQTVVPPP-TIKFGLKHVTSLIEKKKAKLVVIAHDVDPIELVVWLPALC 385
            RDLSRFV+WP+ +RLQR++KIL  RLKVPPAI QF++TLDKN A ++FKLL KY+PE    KK RL A+A A+AN +  Q V   P  +K+GL HV +LIE KKAKLV+IA DVDPIELVV+LPALC
Sbjct:   44 RDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVSKKPYNVKYGLNHVVALIEAKKAKLVLIASDVDPIELVVFLPALC 170          
BLAST of CX300934 vs. ExPASy Swiss-Prot
Match: RL8B_YEAST (60S ribosomal protein L8-B OS=Saccharomyces cerevisiae GN=RPL8B PE=1 SV=3)

HSP 1 Score: 156.762 bits (395), Expect = 3.238e-38
Identity = 83/127 (65.35%), Postives = 98/127 (77.17%), Query Frame = 2
Query:    8 RDLSRFVRWPKNVRLQRQKKILTQRLKVPPAINQFRRTLDKNQAAELFKLLVKYQPENKEAKKIRLEAKAAAIANKEPVQTVVPPP-TIKFGLKHVTSLIEKKKAKLVVIAHDVDPIELVVWLPALC 385
            R+LSR+V+WP+ VRLQRQKKIL+ RLKVPP I QF+ TLD+N AAE FKL  KY+PE    KK RL  +AAAIA  +  Q   P P  +K+GL HV SLIE KKAKLV+IA+DVDPIELVV+LPALC
Sbjct:   44 RNLSRYVKWPEYVRLQRQKKILSIRLKVPPTIAQFQYTLDRNTAAETFKLFNKYRPETAAEKKERLTKEAAAIAEGKSKQDASPKPYAVKYGLNHVVSLIENKKAKLVLIANDVDPIELVVFLPALC 170          
BLAST of CX300934 vs. ExPASy Swiss-Prot
Match: RL8A_YEAST (60S ribosomal protein L8-A OS=Saccharomyces cerevisiae GN=RPL8A PE=1 SV=4)

HSP 1 Score: 154.066 bits (388), Expect = 2.099e-37
Identity = 80/127 (62.99%), Postives = 98/127 (77.17%), Query Frame = 2
Query:    8 RDLSRFVRWPKNVRLQRQKKILTQRLKVPPAINQFRRTLDKNQAAELFKLLVKYQPENKEAKKIRLEAKAAAIANKEPVQTVVPPP-TIKFGLKHVTSLIEKKKAKLVVIAHDVDPIELVVWLPALC 385
            R+LSR+V+WP+ VR+QRQKKIL+ RLKVPP I QF+ TLD+N AAE FKL  KY+PE    KK RL  +AAA+A  +  Q   P P  +K+GL HV +LIE KKAKLV+IA+DVDPIELVV+LPALC
Sbjct:   44 RNLSRYVKWPEYVRVQRQKKILSIRLKVPPTIAQFQYTLDRNTAAETFKLFNKYRPETAAEKKERLTKEAAAVAEGKSKQDASPKPYAVKYGLNHVVALIENKKAKLVLIANDVDPIELVVFLPALC 170          
BLAST of CX300934 vs. ExPASy Swiss-Prot
Match: RL7A_DROME (60S ribosomal protein L7a OS=Drosophila melanogaster GN=RpL7A PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 2.320e-36
Identity = 77/126 (61.11%), Postives = 96/126 (76.19%), Query Frame = 2
Query:    8 RDLSRFVRWPKNVRLQRQKKILTQRLKVPPAINQFRRTLDKNQAAELFKLLVKYQPENKEAKKIRLEAKAAAIANKEPVQTVVPPPTIKFGLKHVTSLIEKKKAKLVVIAHDVDPIELVVWLPALC 385
            RDLSRFVRWPK +R+QRQK +L +RLKVPP I+QF +TLDK  A +LFKLL KY+PE+  AKK+RL+  A A A  + V+    P  +  G   VT LIE+KKA+LVVIAHDVDP+ELV++LPALC
Sbjct:   54 RDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLDKTTAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIEQKKAQLVVIAHDVDPLELVLFLPALC 179          
BLAST of CX300934 vs. ExPASy Swiss-Prot
Match: RL7A_TAKRU (60S ribosomal protein L7a OS=Takifugu rubripes GN=rpl7a PE=3 SV=3)

HSP 1 Score: 149.058 bits (375), Expect = 6.751e-36
Identity = 74/126 (58.73%), Postives = 95/126 (75.40%), Query Frame = 2
Query:    8 RDLSRFVRWPKNVRLQRQKKILTQRLKVPPAINQFRRTLDKNQAAELFKLLVKYQPENKEAKKIRLEAKAAAIANKEPVQTVVPPPTIKFGLKHVTSLIEKKKAKLVVIAHDVDPIELVVWLPALC 385
            RDL+RFV+WP+ +RLQRQ+ IL +RLKVPPAINQF + LD+  A +LFKL  KY+PE K+ KK RL A+A   A  +       PP ++ G+  +TSL+E KKA+LVVIAHDVDPIELV++LPALC
Sbjct:   49 RDLTRFVKWPRYIRLQRQRSILYKRLKVPPAINQFTQALDRQTATQLFKLAHKYRPETKQEKKKRLLARAEQKAAGKGDAPTKRPPVLRAGVNTITSLVENKKAQLVVIAHDVDPIELVIFLPALC 174          
BLAST of CX300934 vs. ExPASy Swiss-Prot
Match: RL7A_CHICK (60S ribosomal protein L7a OS=Gallus gallus GN=RPL7A PE=2 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 4.376e-35
Identity = 74/126 (58.73%), Postives = 94/126 (74.60%), Query Frame = 2
Query:    8 RDLSRFVRWPKNVRLQRQKKILTQRLKVPPAINQFRRTLDKNQAAELFKLLVKYQPENKEAKKIRLEAKAAAIANKEPVQTVVPPPTIKFGLKHVTSLIEKKKAKLVVIAHDVDPIELVVWLPALC 385
            RDL+RFV+WP+ +RLQRQ+ IL +RLKVPPAINQF + LD+  A +L KL  KY+PE K+ KK RL A+A   A  +       PP ++ G+  VT+L+E KKA+LVVIAHDVDPIELVV+LPALC
Sbjct:   49 RDLTRFVKWPRYIRLQRQRSILYKRLKVPPAINQFSQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEQKAAGKGDTPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALC 174          
BLAST of CX300934 vs. ExPASy Swiss-Prot
Match: RL7A_ICTPU (60S ribosomal protein L7a OS=Ictalurus punctatus GN=rpl7a PE=2 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 5.715e-35
Identity = 75/126 (59.52%), Postives = 93/126 (73.81%), Query Frame = 2
Query:    8 RDLSRFVRWPKNVRLQRQKKILTQRLKVPPAINQFRRTLDKNQAAELFKLLVKYQPENKEAKKIRLEAKAAAIANKEPVQTVVPPPTIKFGLKHVTSLIEKKKAKLVVIAHDVDPIELVVWLPALC 385
            RDL+RFV+WP+ VRLQR   IL +RLKVPPAINQF + LD+  A +LFKL  KY+PE K+ KK RL A+A   A  +       PP ++ G+  VTSL+E KKA+LVVIAHDVDPIELV++LPALC
Sbjct:   49 RDLTRFVKWPRYVRLQRHGSILYKRLKVPPAINQFNQALDRQTATQLFKLAHKYRPETKQEKKRRLLARAEQKAAGKGDVPTKRPPVVRAGVNTVTSLVESKKAQLVVIAHDVDPIELVLFLPALC 174          
The following BLAST results are available for this feature:
BLAST of CX300934 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RL7A2_ARATH1.659e-4266.6760S ribosomal protein L7a-2 OS=Arabidopsis thalian... [more]
RL7A1_ARATH2.167e-4266.6760S ribosomal protein L7a-1 OS=Arabidopsis thalian... [more]
RL7A_ORYSJ5.337e-4166.6760S ribosomal protein L7a OS=Oryza sativa subsp. j... [more]
RL8_SCHPO6.524e-3964.5760S ribosomal protein L8 OS=Schizosaccharomyces po... [more]
RL8B_YEAST3.238e-3865.3560S ribosomal protein L8-B OS=Saccharomyces cerevi... [more]
RL8A_YEAST2.099e-3762.9960S ribosomal protein L8-A OS=Saccharomyces cerevi... [more]
RL7A_DROME2.320e-3661.1160S ribosomal protein L7a OS=Drosophila melanogast... [more]
RL7A_TAKRU6.751e-3658.7360S ribosomal protein L7a OS=Takifugu rubripes GN=... [more]
RL7A_CHICK4.376e-3558.7360S ribosomal protein L7a OS=Gallus gallus GN=RPL7... [more]
RL7A_ICTPU5.715e-3559.5260S ribosomal protein L7a OS=Ictalurus punctatus G... [more]

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Properties
Property NameValue
Genbank descriptionC08003H04SK PhyRootSw1 Citrus sinensis cDNA clone C08003H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300934 ID=CX300934; Name=CX300934; organism=Citrus sinensis; type=EST; length=385bp
AAAAGCCAGAGACTTATCTCGTTTCGTCCGCTGGCCAAAGAACGTTAGAC
TTCAACGCCAAAAGAAGATCTTAACTCAACGTTTAAAGGTCCCTCCAGCT
ATCAACCAATTCCGCAGAACCTTGGACAAGAACCAAGCTGCTGAATTATT
CAAGCTCTTAGTCAAGTACCAGCCTGAGAACAAGGAGGCCAAGAAGATTA
GACTTGAAGCTAAGGCTGCTGCCATTGCTAACAAGGAACCTGTCCAAACT
GTTGTTCCTCCTCCAACCATCAAGTTTGGTTTAAAGCACGTTACTTCTTT
AATCGAGAAGAAGAAGGCTAAGTTGGTCGTCATCGCTCACGATGTTGATC
CTATCGAATTAGTGGTCTGGTTACCTGCTTTATGC
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