CX300923

Overview
NameCX300923
Unique NameCX300923
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length388
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9634 contig Csv1_Contig9634:69..456. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300923 vs. ExPASy Swiss-Prot
Match: RS7_ORYSJ (40S ribosomal protein S7 OS=Oryza sativa subsp. japonica GN=RPS7 PE=2 SV=2)

HSP 1 Score: 207.608 bits (527), Expect = 1.593e-53
Identity = 101/121 (83.47%), Postives = 112/121 (92.56%), Query Frame = 1
Query:   25 TTKKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQRPRSRTLTAVH 387
            T ++KIQKDK  EPTEFE+TVAQA FDLEN NQELKSDLKDLYIN A+QMD+ GNRKA+++YVPYRLRKAY+KIH RLVRELEKKFSGKDVVL+ATRRIVRPPKKGSAV RPR+RTLTAVH
Sbjct:    3 TARRKIQKDKGLEPTEFEDTVAQAFFDLENGNQELKSDLKDLYINGAVQMDLPGNRKAVIIYVPYRLRKAYKKIHVRLVRELEKKFSGKDVVLVATRRIVRPPKKGSAVVRPRTRTLTAVH 123          
BLAST of CX300923 vs. ExPASy Swiss-Prot
Match: RS7_AVIMR (40S ribosomal protein S7 OS=Avicennia marina GN=RPS7 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 2.718e-53
Identity = 101/121 (83.47%), Postives = 113/121 (93.39%), Query Frame = 1
Query:   25 TTKKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQRPRSRTLTAVH 387
            T  +KI KDKDAEPTEFEE VAQALFD ENTNQE+KSDLKDLYIN A+Q+DVSG +KA+V++VPYRLRK++RKIH RLVRELEKKFSGK+VVLIATRRI+RPPKKGSAVQRPRSRTLTAVH
Sbjct:    3 TALQKIHKDKDAEPTEFEENVAQALFDFENTNQEIKSDLKDLYINSALQIDVSGGKKAVVIHVPYRLRKSFRKIHPRLVRELEKKFSGKEVVLIATRRILRPPKKGSAVQRPRSRTLTAVH 123          
BLAST of CX300923 vs. ExPASy Swiss-Prot
Match: RS72_ARATH (40S ribosomal protein S7-2 OS=Arabidopsis thaliana GN=RPS7B PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 3.924e-52
Identity = 97/119 (81.51%), Postives = 110/119 (92.44%), Query Frame = 1
Query:   31 KKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQRPRSRTLTAVH 387
            + KI KDK   PTEFEE V QALFDLENTNQELKS+LKDLYINQA+QMD+SGNRKA+V+YVP+RLRKA+RKIH RLVRELEKKFSGKDV+ +ATRRI+RPPKKGSAVQRPR+RTLT+VH
Sbjct:    5 QNKIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVPFRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAVQRPRNRTLTSVH 123          
BLAST of CX300923 vs. ExPASy Swiss-Prot
Match: RS73_ARATH (40S ribosomal protein S7-3 OS=Arabidopsis thaliana GN=RPS7C PE=2 SV=2)

HSP 1 Score: 202.601 bits (514), Expect = 5.126e-52
Identity = 96/121 (79.34%), Postives = 113/121 (93.39%), Query Frame = 1
Query:   25 TTKKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQRPRSRTLTAVH 387
            + + KI+KDK+AEPTE EE VAQALFDLENTNQELKS+LKDLYINQA+ MD+SGNRKA+V+YVP+RLRKA+RKIH RLVRELEKKFSGKDV+ + TRRI+RPPKKG+AVQRPR+RTLT+VH
Sbjct:    3 SAQNKIKKDKNAEPTECEEQVAQALFDLENTNQELKSELKDLYINQAVHMDISGNRKAVVIYVPFRLRKAFRKIHPRLVRELEKKFSGKDVIFVTTRRIMRPPKKGAAVQRPRNRTLTSVH 123          
BLAST of CX300923 vs. ExPASy Swiss-Prot
Match: RS7_SECCE (40S ribosomal protein S7 OS=Secale cereale GN=RPS7 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 6.694e-52
Identity = 99/121 (81.82%), Postives = 111/121 (91.74%), Query Frame = 1
Query:   25 TTKKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQRPRSRTLTAVH 387
            T +KKIQKDK  EP+EFE+TVAQA FDLEN NQELKSD+KDLYIN A QMDV+GNRKA+V++VPYRLRK +RKIH RLVRELEKKFSGKDVV++ATRRIVRPPKKGSAV RPR+RTLTAVH
Sbjct:    3 TARKKIQKDKGLEPSEFEDTVAQAFFDLENGNQELKSDVKDLYINAAFQMDVAGNRKAVVIHVPYRLRKNFRKIHVRLVRELEKKFSGKDVVIVATRRIVRPPKKGSAVVRPRTRTLTAVH 123          
BLAST of CX300923 vs. ExPASy Swiss-Prot
Match: RS7_BRAOL (40S ribosomal protein S7 OS=Brassica oleracea GN=RPS7 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 6.694e-52
Identity = 96/121 (79.34%), Postives = 110/121 (90.91%), Query Frame = 1
Query:   25 TTKKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQRPRSRTLTAVH 387
            + + KI KDK   PTEFEE VAQA FDLENTNQELKSDLKDLYINQA+ MD++GNRKA+V+YVP+RLRKA+RKIHSRLVRELEKKFSG DV+ +ATRRI+RPPKKGSAVQRPR+RTLT+VH
Sbjct:    3 SAQNKIHKDKGVAPTEFEERVAQAFFDLENTNQELKSDLKDLYINQAVSMDIAGNRKAVVIYVPFRLRKAFRKIHSRLVRELEKKFSGNDVIFVATRRIMRPPKKGSAVQRPRNRTLTSVH 123          
BLAST of CX300923 vs. ExPASy Swiss-Prot
Match: RS7_HORVU (40S ribosomal protein S7 OS=Hordeum vulgare GN=RPS7 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 4.797e-50
Identity = 99/121 (81.82%), Postives = 109/121 (90.08%), Query Frame = 1
Query:   25 TTKKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQRPRSRTLTAVH 387
            T +KKIQKDK  EP+EFE+TVAQA FDLEN NQELKSDLKDLYIN AIQMDV GNRKA+V++VPYRLRK +RKIH RLVRELE + SGKDVV +ATRRIVRPPKKGSAVQRPR+RTLTAVH
Sbjct:    3 TARKKIQKDKGVEPSEFEDTVAQAFFDLENGNQELKSDLKDLYINTAIQMDVVGNRKAVVIHVPYRLRKPFRKIHVRLVRELE-RVSGKDVVFVATRRIVRPPKKGSAVQRPRTRTLTAVH 122          
BLAST of CX300923 vs. ExPASy Swiss-Prot
Match: RS71_ARATH (40S ribosomal protein S7-1 OS=Arabidopsis thaliana GN=RPS7A PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 5.864e-48
Identity = 93/121 (76.86%), Postives = 107/121 (88.43%), Query Frame = 1
Query:   25 TTKKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQRPRSRTLTAVH 387
            + + KI K+K  E +E +E VAQA FDLENTNQELKS+LKDLY+N A+Q+D+SG RKAIVV VPYRLRKAYRKIH RLVRELEKKFSGKDV+LIATRRIVRPPKKGSA +RPR+RTLT+VH
Sbjct:    3 SAQHKIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVPYRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIVRPPKKGSAAKRPRNRTLTSVH 123          
BLAST of CX300923 vs. ExPASy Swiss-Prot
Match: RS7_ICTPU (40S ribosomal protein S7 OS=Ictalurus punctatus GN=rps7 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.398e-25
Identity = 64/125 (51.20%), Postives = 86/125 (68.80%), Query Frame = 1
Query:   25 TTKKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV----QRPRSRTLTAVH 387
            ++  KI K    +P EFE  ++QAL +LE  N +LK+ L++L I  A +++V G+RKAI+++VP    KA++KI  RLVRELEKKFSGK VV IA RRI+  P + S      +RPRSRTLTAVH
Sbjct:    3 SSSAKIVKANGEKPDEFESGISQALLELE-MNSDLKAQLRELNITAAKEIEVGGSRKAIIIFVPVPQLKAFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVH 126          
BLAST of CX300923 vs. ExPASy Swiss-Prot
Match: RS7_DANRE (40S ribosomal protein S7 OS=Danio rerio GN=rps7 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.398e-25
Identity = 63/125 (50.40%), Postives = 86/125 (68.80%), Query Frame = 1
Query:   25 TTKKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV----QRPRSRTLTAVH 387
            +T  KI K    +P EFE  ++QAL +LE  N +LK+ L++L+I  A +++V G+RKAI+++VP    K+++KI  RLVRELEKKFSGK VV IA RRI+  P + S      +RPRSRTLT VH
Sbjct:    3 STSAKIVKPNGEKPDEFESGISQALLELE-MNSDLKAQLRELHITAAKEIEVGGSRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTNVH 126          
The following BLAST results are available for this feature:
BLAST of CX300923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
RS7_ORYSJ1.593e-5383.4740S ribosomal protein S7 OS=Oryza sativa subsp. ja... [more]
RS7_AVIMR2.718e-5383.4740S ribosomal protein S7 OS=Avicennia marina GN=RP... [more]
RS72_ARATH3.924e-5281.5140S ribosomal protein S7-2 OS=Arabidopsis thaliana... [more]
RS73_ARATH5.126e-5279.3440S ribosomal protein S7-3 OS=Arabidopsis thaliana... [more]
RS7_SECCE6.694e-5281.8240S ribosomal protein S7 OS=Secale cereale GN=RPS7... [more]
RS7_BRAOL6.694e-5279.3440S ribosomal protein S7 OS=Brassica oleracea GN=R... [more]
RS7_HORVU4.797e-5081.8240S ribosomal protein S7 OS=Hordeum vulgare GN=RPS... [more]
RS71_ARATH5.864e-4876.8640S ribosomal protein S7-1 OS=Arabidopsis thaliana... [more]
RS7_ICTPU2.398e-2551.2040S ribosomal protein S7 OS=Ictalurus punctatus GN... [more]
RS7_DANRE2.398e-2550.4040S ribosomal protein S7 OS=Danio rerio GN=rps7 PE... [more]

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Properties
Property NameValue
Genbank descriptionC08003G04SK PhyRootSw1 Citrus sinensis cDNA clone C08003G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300923 ID=CX300923; Name=CX300923; organism=Citrus sinensis; type=EST; length=388bp
CTCGTGCCGAATTCGGCACGAGGCACGACTAAGAAGAAAATCCAAAAAGA
CAAGGATGCCGAACCTACTGAGTTTGAGGAGACAGTTGCCCAGGCACTGT
TTGATTTGGAGAATACCAACCAGGAGCTTAAAAGTGACTTGAAAGATCTT
TACATTAATCAAGCCATTCAAATGGATGTTTCTGGAAACCGCAAGGCAAT
TGTTGTCTATGTGCCTTACAGATTGAGGAAGGCTTATCGGAAGATTCATT
CTCGCCTTGTGAGAGAGCTGGAGAAGAAATTCAGTGGCAAGGATGTTGTA
CTCATTGCCACCCGAAGGATAGTCAGGCCACCAAAGAAAGGCTCTGCTGT
TCAGAGACCTCGCAGTCGCACACTCACAGCTGTTCATG
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