EH117793

Overview
NameEH117793
Unique NameEH117793
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length155
Libraries
Library NameType
Different expression profile of FJWC and FJ72-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5970 contig Csv1_Contig5970:391..545. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EH117793 vs. ExPASy Swiss-Prot
Match: GPX4_SPIOL (Probable phospholipid hydroperoxide glutathione peroxidase OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.889e-15
Identity = 34/48 (70.83%), Postives = 40/48 (83.33%), Query Frame = -1
Query:    3 QFTIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVTQDSS 146
            ++ IFDK+DVNG NAAPIYKFLKS KGG  GD +KWNFTKFLV +D +
Sbjct:   98 EYPIFDKVDVNGSNAAPIYKFLKSSKGGLFGDGLKWNFTKFLVDKDGN 145          
BLAST of EH117793 vs. ExPASy Swiss-Prot
Match: GPX4_MESCR (Probable phospholipid hydroperoxide glutathione peroxidase OS=Mesembryanthemum crystallinum GN=GPXMC1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.889e-15
Identity = 34/46 (73.91%), Postives = 39/46 (84.78%), Query Frame = -1
Query:    9 QFTIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVTQD 146
            +F IFDK+DVNG NAAP+YK+LKS KGG  GD IKWNFTKFLV +D
Sbjct:   98 EFPIFDKVDVNGSNAAPVYKYLKSSKGGLFGDGIKWNFTKFLVDRD 143          
BLAST of EH117793 vs. ExPASy Swiss-Prot
Match: GPX2_ARATH (Probable glutathione peroxidase 2 OS=Arabidopsis thaliana GN=GPX2 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.889e-15
Identity = 35/46 (76.09%), Postives = 41/46 (89.13%), Query Frame = -1
Query:    9 QFTIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVTQD 146
            +F IFDK+DVNGKN AP+YK+LK+EKGG L DAIKWNFTKFLV+ D
Sbjct:   95 EFPIFDKVDVNGKNTAPLYKYLKAEKGGLLIDAIKWNFTKFLVSPD 140          
BLAST of EH117793 vs. ExPASy Swiss-Prot
Match: GPX4_TOBAC (Probable phospholipid hydroperoxide glutathione peroxidase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.633e-15
Identity = 33/48 (68.75%), Postives = 42/48 (87.50%), Query Frame = -1
Query:    3 QFTIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVTQDSS 146
            ++ IFDK+DVNG NAAP+YKFLKS KGGF GD+IKWNF+KFLV ++ +
Sbjct:   97 EYPIFDKVDVNGDNAAPLYKFLKSSKGGFFGDSIKWNFSKFLVDKEGN 144          
BLAST of EH117793 vs. ExPASy Swiss-Prot
Match: GPX4_NICSY (Probable phospholipid hydroperoxide glutathione peroxidase OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.633e-15
Identity = 33/48 (68.75%), Postives = 42/48 (87.50%), Query Frame = -1
Query:    3 QFTIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVTQDSS 146
            ++ IFDK+DVNG NAAP+YKFLKS KGGF GD+IKWNF+KFLV ++ +
Sbjct:   97 EYPIFDKVDVNGDNAAPLYKFLKSSKGGFFGDSIKWNFSKFLVDKEGN 144          
BLAST of EH117793 vs. ExPASy Swiss-Prot
Match: GPX4_GOSHI (Probable phospholipid hydroperoxide glutathione peroxidase OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.633e-15
Identity = 33/48 (68.75%), Postives = 42/48 (87.50%), Query Frame = -1
Query:    3 QFTIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVTQDSS 146
            ++ IFDK+DVNG NAAP+YKFLKS KGGF GD+IKWNF+KFLV ++ +
Sbjct:   98 EYPIFDKVDVNGDNAAPLYKFLKSSKGGFFGDSIKWNFSKFLVDKEGN 145          
BLAST of EH117793 vs. ExPASy Swiss-Prot
Match: GPX2_CAEEL (Probable glutathione peroxidase R05H10.5 OS=Caenorhabditis elegans GN=R05H10.5 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.930e-14
Identity = 35/47 (74.47%), Postives = 40/47 (85.11%), Query Frame = -1
Query:    9 YQFTIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVTQD 149
            ++ T+F KIDVNG N AP+YKFLK EKGGFL DAIKWNFTKFLV +D
Sbjct:   89 FEPTLFQKIDVNGDNTAPLYKFLKQEKGGFLVDAIKWNFTKFLVGRD 135          
BLAST of EH117793 vs. ExPASy Swiss-Prot
Match: GPX4_SOLLC (Probable phospholipid hydroperoxide glutathione peroxidase OS=Solanum lycopersicum GN=GPXle-1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.292e-14
Identity = 31/46 (67.39%), Postives = 40/46 (86.96%), Query Frame = -1
Query:    9 QFTIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVTQD 146
            ++ IFDK+DVNG NAAP+Y+FLKS KGGF GD IKWNF+KFL+ ++
Sbjct:   97 EYPIFDKVDVNGDNAAPLYRFLKSSKGGFFGDGIKWNFSKFLIDKE 142          
BLAST of EH117793 vs. ExPASy Swiss-Prot
Match: GPX6_ARATH (Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial OS=Arabidopsis thaliana GN=GPX6 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.334e-14
Identity = 32/48 (66.67%), Postives = 38/48 (79.17%), Query Frame = -1
Query:    3 QFTIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVTQDSS 146
            ++ IFDK+DVNG  AAP+YKFLKS KGG  GD IKWNF KFLV +D +
Sbjct:  159 EYPIFDKVDVNGDKAAPVYKFLKSSKGGLFGDGIKWNFAKFLVDKDGN 206          
BLAST of EH117793 vs. ExPASy Swiss-Prot
Match: GPX4_CITSI (Probable phospholipid hydroperoxide glutathione peroxidase OS=Citrus sinensis GN=CSA PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.578e-14
Identity = 32/48 (66.67%), Postives = 40/48 (83.33%), Query Frame = -1
Query:    3 QFTIFDKIDVNGKNAAPIYKFLKSEKGGFLGDAIKWNFTKFLVTQDSS 146
            +F IFDK+DVNG NAAP+YK LKS KGG  GD+IKWNF+KFLV ++ +
Sbjct:   95 EFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGN 142          
The following BLAST results are available for this feature:
BLAST of EH117793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
GPX4_SPIOL3.889e-1570.83Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_MESCR3.889e-1573.91Probable phospholipid hydroperoxide glutathione pe... [more]
GPX2_ARATH3.889e-1576.09Probable glutathione peroxidase 2 OS=Arabidopsis t... [more]
GPX4_TOBAC6.633e-1568.75Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_NICSY6.633e-1568.75Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_GOSHI6.633e-1568.75Probable phospholipid hydroperoxide glutathione pe... [more]
GPX2_CAEEL1.930e-1474.47Probable glutathione peroxidase R05H10.5 OS=Caenor... [more]
GPX4_SOLLC3.292e-1467.39Probable phospholipid hydroperoxide glutathione pe... [more]
GPX6_ARATH7.334e-1466.67Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_CITSI9.578e-1466.67Probable phospholipid hydroperoxide glutathione pe... [more]

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Properties
Property NameValue
Genbank descriptionfjfw21 Different expression profile of FJWC and FJ72-1 Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH117793 ID=EH117793; Name=EH117793; organism=Citrus sinensis; type=EST; length=155bp
GACGATGAGTCCTGAGTAACCAGAAACTTGGTAAAATTCCACTTGATTGC
ATCTCCAAGGAATCCTCCTTTCTCTGATTTTAGAAACTTGTAAATAGGTG
CCGCATTCTTTCCATTCACATCAATCTTATCAAAGATTGTGAATTGGTAC
GCAGT
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