CX671661

Overview
NameCX671661
Unique NameCX671661
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length925
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671661 vs. ExPASy Swiss-Prot
Match: DCP1_ARATH (mRNA-decapping enzyme-like protein OS=Arabidopsis thaliana GN=At1g08370 PE=2 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 9.064e-28
Identity = 57/67 (85.07%), Postives = 63/67 (94.03%), Query Frame = 3
Query:  378 QKNTQPRFQFVVMNRRNTDNLVENPLGDFEFEVQVPYLLYRNASQEVNGIWFYNARECEEVANLFSR 578
            +++TQPRFQF+VMNRRNTDNLVEN LGDFE+EVQ PYLLYRNASQEVNGIWFYN RECEEVA LF+R
Sbjct:   66 KRSTQPRFQFIVMNRRNTDNLVENLLGDFEYEVQGPYLLYRNASQEVNGIWFYNKRECEEVATLFNR 132          

HSP 2 Score: 122.479 bits (306), Expect = 3.463e-27
Identity = 60/76 (78.95%), Postives = 67/76 (88.16%), Query Frame = 1
Query:  184 MSQNGKLMANLDQQSTKLLNLTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSHKDVEGSLFVVKRTHSLDFSLL 411
            MSQNGK++ NLDQ ST+LLNLTVLQRIDP+IEEILITAAHVTFYEFNI+LSQWS KDVEGSLFVVKR+    F  +
Sbjct:    1 MSQNGKIIPNLDQNSTRLLNLTVLQRIDPYIEEILITAAHVTFYEFNIELSQWSRKDVEGSLFVVKRSTQPRFQFI 76          
BLAST of CX671661 vs. ExPASy Swiss-Prot
Match: DCP1B_HUMAN (mRNA-decapping enzyme 1B OS=Homo sapiens GN=DCP1B PE=1 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 2.025e-17
Identity = 26/63 (41.27%), Postives = 40/63 (63.49%), Query Frame = 3
Query:  381 KNTQPRFQFVVMNRRNTDNLVENPLGDFEFEVQVPYLLYRNASQEVNGIWFYNARECEEVANL 569
            ++  P+  F +MNR + +N  E    D +F++Q P+LLYRNA   + GIWFY+  EC+ +A L
Sbjct:   64 RSASPKHGFTIMNRLSMENRTEPITKDLDFQLQDPFLLYRNARLSIYGIWFYDKEECQRIAEL 126          

HSP 2 Score: 46.595 bits (109), Expect = 2.025e-17
Identity = 22/52 (42.31%), Postives = 31/52 (59.62%), Query Frame = 1
Query:  238 LNLTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSHKDVEGSLFVVKRTHS 393
            ++L  LQR DP+I  I+  A+ V  Y F    ++W   DVEG+LFV  R+ S
Sbjct:   16 ISLAALQRHDPYINRIVDVASQVALYTFGHRANEWEKTDVEGTLFVYTRSAS 67          
BLAST of CX671661 vs. ExPASy Swiss-Prot
Match: DCP1B_PONAB (mRNA-decapping enzyme 1B OS=Pongo abelii GN=DCP1B PE=2 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 2.025e-17
Identity = 26/63 (41.27%), Postives = 40/63 (63.49%), Query Frame = 3
Query:  381 KNTQPRFQFVVMNRRNTDNLVENPLGDFEFEVQVPYLLYRNASQEVNGIWFYNARECEEVANL 569
            ++  P+  F +MNR + +N  E    D +F++Q P+LLYRNA   + GIWFY+  EC+ +A L
Sbjct:   64 RSASPKHGFTIMNRLSMENRTEPITKDLDFQLQDPFLLYRNARLSIYGIWFYDKEECQRIAEL 126          

HSP 2 Score: 46.595 bits (109), Expect = 2.025e-17
Identity = 22/52 (42.31%), Postives = 31/52 (59.62%), Query Frame = 1
Query:  238 LNLTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSHKDVEGSLFVVKRTHS 393
            ++L  LQR DP+I  I+  A+ V  Y F    ++W   DVEG+LFV  R+ S
Sbjct:   16 ISLAALQRHDPYINRIVDVASQVALYTFGHRANEWEKTDVEGTLFVYTRSAS 67          
BLAST of CX671661 vs. ExPASy Swiss-Prot
Match: DCP1B_BOVIN (mRNA-decapping enzyme 1B OS=Bos taurus GN=DCP1B PE=2 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 1.653e-16
Identity = 26/63 (41.27%), Postives = 39/63 (61.90%), Query Frame = 3
Query:  381 KNTQPRFQFVVMNRRNTDNLVENPLGDFEFEVQVPYLLYRNASQEVNGIWFYNARECEEVANL 569
            ++  P+  F +MNR + +N  E    D +F +Q P+LLYRNA   + GIWFY+  EC+ +A L
Sbjct:   62 RSASPKHGFTIMNRLSMENRTEPITKDLDFLLQDPFLLYRNARLSIYGIWFYDKEECQRIAEL 124          

HSP 2 Score: 45.4394 bits (106), Expect = 1.653e-16
Identity = 21/52 (40.38%), Postives = 31/52 (59.62%), Query Frame = 1
Query:  238 LNLTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSHKDVEGSLFVVKRTHS 393
            ++L  L+R DP+I  I+  A+ V  Y F    ++W   DVEG+LFV  R+ S
Sbjct:   14 ISLAALRRHDPYISRIVDVASQVALYTFGHRANEWEKTDVEGTLFVYSRSAS 65          
BLAST of CX671661 vs. ExPASy Swiss-Prot
Match: DCP1A_MOUSE (mRNA-decapping enzyme 1A OS=Mus musculus GN=Dcp1a PE=1 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 1.034e-15
Identity = 27/66 (40.91%), Postives = 40/66 (60.61%), Query Frame = 3
Query:  378 QKNTQPRFQFVVMNRRNTDNLVENPLGDFEFEVQVPYLLYRNASQEVNGIWFYNARECEEVANLFS 575
            +++  P   F ++NR N  NLVE    D EF++  P+LLYRNAS  +  IWFY+  +C  +A L +
Sbjct:   78 RRSASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAKLMA 143          

HSP 2 Score: 41.5874 bits (96), Expect = 1.034e-15
Identity = 21/65 (32.31%), Postives = 36/65 (55.38%), Query Frame = 1
Query:  199 KLMANLDQQSTKLLNLTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSHKDVEGSLFVVKRTHS 393
            +L++  +Q+    ++L  L++ DP+I  I      V  Y F    +QW   D+EG+LFV +R+ S
Sbjct:   22 ELLSRAEQE----MSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRSAS 82          
BLAST of CX671661 vs. ExPASy Swiss-Prot
Match: DCP1A_HUMAN (mRNA-decapping enzyme 1A OS=Homo sapiens GN=DCP1A PE=1 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 1.345e-15
Identity = 27/66 (40.91%), Postives = 40/66 (60.61%), Query Frame = 3
Query:  378 QKNTQPRFQFVVMNRRNTDNLVENPLGDFEFEVQVPYLLYRNASQEVNGIWFYNARECEEVANLFS 575
            +++  P   F ++NR N  NLVE    D EF++  P+LLYRNAS  +  IWFY+  +C  +A L +
Sbjct:   58 RRSASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAKLMA 123          

HSP 2 Score: 41.2022 bits (95), Expect = 1.345e-15
Identity = 19/52 (36.54%), Postives = 29/52 (55.77%), Query Frame = 1
Query:  238 LNLTVLQRIDPFIEEILITAAHVTFYEFNIDLSQWSHKDVEGSLFVVKRTHS 393
            ++L  L++ DP+I  I      V  Y F    +QW   D+EG+LFV +R+ S
Sbjct:   11 MSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRSAS 62          
The following BLAST results are available for this feature:
BLAST of CX671661 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
DCP1_ARATH9.064e-2885.07mRNA-decapping enzyme-like protein OS=Arabidopsis ... [more]
DCP1B_HUMAN2.025e-1741.27mRNA-decapping enzyme 1B OS=Homo sapiens GN=DCP1B ... [more]
DCP1B_PONAB2.025e-1741.27mRNA-decapping enzyme 1B OS=Pongo abelii GN=DCP1B ... [more]
DCP1B_BOVIN1.653e-1641.27mRNA-decapping enzyme 1B OS=Bos taurus GN=DCP1B PE... [more]
DCP1A_MOUSE1.034e-1540.91mRNA-decapping enzyme 1A OS=Mus musculus GN=Dcp1a ... [more]
DCP1A_HUMAN1.345e-1540.91mRNA-decapping enzyme 1A OS=Homo sapiens GN=DCP1A ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_12D07_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12D07-H14-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671661 ID=CX671661; Name=CX671661; organism=Citrus sinensis; type=EST; length=925bp
GCGAATTTGGGTACCGCGGCCCCCCCCAAATGTTTGAAAGAAGTTAAAGC
AAGATCAATCTCGAGTCTCAACTCTTTCACTCTCTCTCGGCTATCTCATC
AAACACTTTATTTACAAAAGAGAGAGCTCACAGAAAAACCATGGCGCTTG
TGCTCGAGGCAGAGCCCAAAAGGACTATGAAAAATGTCGCAGAACGGAAA
ATTAATGGCTAATCTGGACCAGCAGAGCACAAAACTCCTAAACCTGACAG
TTCTTCAGCGAATCGATCCATTCATTGAGGAGATCCTCATCACGGCCGCT
CATGTCACCTTCTACGAGTTCAACATCGACCTCAGCCAATGGAGTCATAA
GGATGTTGAAGGATCTCTCTTCGTCGTCAAAAGAACACACAGCCTCGATT
TCAGTTTGTTGTGATGAATCGACGTAATACAGATAATTTAGTGGAAAATC
CTTTGGGAGATTTTGAGTTTGAAGTTCAGGTTCCGTATTTGTTATATCGG
AATGCATCCCAAGAAGTAAATGGGATTTGGTTCTACAATGCTCGTGAATG
TGAAGAGGTAGCAAATCTTTTTAGCAGGTATTGTTGTTTTACTGGTTTTA
CTACTGTAGTAGTTTAAGTGTATATTATTTTGTTTTACATGTTAATAATT
GACACATAGAGAATAGTTTAGAATCTTAACCAAACTTGGAAATGTGTTTC
AAATAATAGAGTATGGTTATTACATGTTGCTTCTGCTGAGGCCTCATGAA
CATGTTTTTAGTTATTGTTTTTGTGAATTGTATATTGGAATTATTATTCT
TGGGATCTGGCTTGTACAGATTTCTTTTTTGCCTTGCCTGGCATCTTTGA
AGTTTGGTTAATAAAACTTGTTTAATGCTATTATATTCTCCTCCTTGCAT
GCTTTTTATTTCGAGATGTGGAATG
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