CV712872

Overview
NameCV712872
Unique NameCV712872
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712872 vs. ExPASy Swiss-Prot
Match: RH1_ARATH (DEAD-box ATP-dependent RNA helicase 1 OS=Arabidopsis thaliana GN=RH1 PE=2 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 2.094e-52
Identity = 101/121 (83.47%), Postives = 111/121 (91.74%), Query Frame = 2
Query:  362 VLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLS 724
            V+PWMR+PVDVS  E+C LD LPCL+P+LK AL+NMGISSLFPVQVAVW ETIGPG FERD+C+NSPTGSGKTLSYALPIVQ L++R VRCLRALVVLPTRDLALQVKDVF AIAPAVGLS
Sbjct:    4 VVPWMRAPVDVSNVENCALDTLPCLNPKLKKALENMGISSLFPVQVAVWHETIGPGGFERDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQVKDVFDAIAPAVGLS 124          
BLAST of CV712872 vs. ExPASy Swiss-Prot
Match: RH1_ORYSJ (DEAD-box ATP-dependent RNA helicase 1 OS=Oryza sativa subsp. japonica GN=Os02g0795900 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.306e-49
Identity = 96/130 (73.85%), Postives = 103/130 (79.23%), Query Frame = 2
Query:  335 EEAKKKSVPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLS 724
            E      VP LPWMR+PVD+  F  CP+ HLP LDPRL   LQ MGI S FPVQVA W ETIGPG FERD+CINSPTGSGKTL+YALPIVQ L+ R VRCLRALVVLPTRDLALQVK+VF AIAP VGLS
Sbjct:   11 EGGPSSRVPHLPWMRNPVDIDSFSGCPVAHLPRLDPRLVKPLQRMGIESFFPVQVAAWLETIGPGAFERDICINSPTGSGKTLAYALPIVQMLATRKVRCLRALVVLPTRDLALQVKEVFDAIAPVVGLS 140          
BLAST of CV712872 vs. ExPASy Swiss-Prot
Match: DDX51_DANRE (ATP-dependent RNA helicase DDX51 OS=Danio rerio GN=ddx51 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.160e-18
Identity = 51/106 (48.11%), Postives = 69/106 (65.09%), Query Frame = 2
Query:  413 PLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQ---ETIGPGLF-------ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 700
            P+  +P + P L   LQ  GI S FPVQ  V     E++G GL         RD+C+++PTGSGKTL++ +P+VQ LS R VR +RAL VLPT++LA QV +VF+A
Sbjct:  189 PISEVPGICPTLLRKLQTNGIQSFFPVQAEVIPAILESVGSGLLVGPGGYRPRDVCVSAPTGSGKTLAFVIPVVQALSKRVVRQVRALAVLPTKELAQQVSNVFSA 294          
BLAST of CV712872 vs. ExPASy Swiss-Prot
Match: DDX51_MOUSE (ATP-dependent RNA helicase DDX51 OS=Mus musculus GN=Ddx51 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.675e-17
Identity = 58/129 (44.96%), Postives = 80/129 (62.02%), Query Frame = 2
Query:  350 KSVPVLP-WMRSP--VDVSLFEDC-PLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQET---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 694
            K  P LP W+  P  V  S+ ED  P++ +P + P L+  L+  GI+S FPVQ AV             IG G ++  DLC+++PTGSGKTL++ +P+VQ L +R V  +RALVVLPT++LA QV  VF
Sbjct:  145 KVQPFLPAWLAKPSCVKKSVTEDLTPIEDIPEVHPDLQKQLRANGITSYFPVQAAVIPALLESADHGFLIGRGGYQPSDLCVSAPTGSGKTLAFVIPVVQALLHRVVCHIRALVVLPTKELAQQVSKVF 273          
BLAST of CV712872 vs. ExPASy Swiss-Prot
Match: DDX51_HUMAN (ATP-dependent RNA helicase DDX51 OS=Homo sapiens GN=DDX51 PE=1 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 3.731e-17
Identity = 59/138 (42.75%), Postives = 81/138 (58.70%), Query Frame = 2
Query:  350 KSVPVLP-WMRSP--VDVSLFEDC-PLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQET---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGL 721
            K  P LP W+  P  V  ++ ED  P++ +P + P L+  L+  GISS FPVQ AV             +G G +   DLC+++PTGSGKTL++ +P+VQ L +R V  +RALVVLPT++LA QV  VF     A  L
Sbjct:  173 KVQPFLPRWLAEPNCVRRNVTEDLVPIEDIPDVHPDLQKQLRAHGISSYFPVQAAVIPALLESAACGFLVGRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLSRVVCHIRALVVLPTKELAQQVSKVFNIYTDATPL 310          
BLAST of CV712872 vs. ExPASy Swiss-Prot
Match: DBP6_PICGU (ATP-dependent RNA helicase DBP6 OS=Pichia guilliermondii GN=DBP6 PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.264e-14
Identity = 50/128 (39.06%), Postives = 72/128 (56.25%), Query Frame = 2
Query:  365 LPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQ--------ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLS 724
            L W+ +P+  S  E  P          +K  LQ+ G SS F VQV+V +        + I P +   DL +N+ TGSGKTL YA+PI+++L NR V  +RA+V++PT+ L  QVK  FA ++    LS
Sbjct:  176 LDWLATPIYASTTETVPFSSFGLSSSMVK-NLQSNGFSSAFSVQVSVLKLLLPDMESQAIRPDI-GGDLLVNAATGSGKTLGYAIPIIESLRNRIVPRVRAIVLVPTKPLISQVKATFAMLSKNTNLS 301          
BLAST of CV712872 vs. ExPASy Swiss-Prot
Match: DDX51_DROME (Probable ATP-dependent RNA helicase Dbp73D OS=Drosophila melanogaster GN=Dbp73D PE=2 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 5.043e-14
Identity = 58/137 (42.34%), Postives = 76/137 (55.47%), Query Frame = 2
Query:  341 AKKKSVPV-LP-WMRSPV-----DVSLFEDCP----LDHLPCLDPRLKVALQNMGISSLFPVQVAV--W---QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 703
            AKKK V + LP W+  P       +   E+ P    +D L  L+     AL+ M I  LFPVQ  V  W        P    RD+C+++PTGSGKTL++A+PIVQ LS R    +RALVVLP  +LALQV  V + +
Sbjct:  102 AKKKKVQMQLPNWLAHPTIIEGGSLQPEEEVPASEAIDQLDYLEKYTCQALKQMKIKRLFPVQKQVIPWILEAHAKPPPFRPRDICVSAPTGSGKTLAFAIPIVQLLSQRVDCKVRALVVLPVAELALQVYRVISEL 238          
BLAST of CV712872 vs. ExPASy Swiss-Prot
Match: DBP6_SCHPO (ATP-dependent RNA helicase dbp6 OS=Schizosaccharomyces pombe GN=dbp6 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.242e-12
Identity = 49/132 (37.12%), Postives = 67/132 (50.76%), Query Frame = 2
Query:  347 KKSVPVLP-WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGL------FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGL 721
            K    VLP W+  P+ V          L  +  +L   LQ   I+  F VQ AV    +  G       +  D+C+++ TGSGKTLSY +PIVQ LS+R V  LR +V++PTR+L +QV   F       GL
Sbjct:  104 KNITSVLPKWLAEPITVDPNTTVEFSSLN-ISSKLVERLQKQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAKTFEYYMSGAGL 234          
BLAST of CV712872 vs. ExPASy Swiss-Prot
Match: DBP6_LODEL (ATP-dependent RNA helicase DBP6 OS=Lodderomyces elongisporus GN=DBP6 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.165e-12
Identity = 41/128 (32.03%), Postives = 72/128 (56.25%), Query Frame = 2
Query:  365 LPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIG--------PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLS 724
            L W+ +P  +++ +  P    P L P +   L+++G  + F VQV V  + +         P  F  D+ +N+ TGSGKTL+Y++PI+++L +R V  +RA+V++PT+ L  QV+     +A    L+
Sbjct:  207 LDWLTTPEYIAIADTKPFSEFP-LSPFMHENLESLGFENAFAVQVGVLSKLLPEIQANKLRPDAFG-DVLVNASTGSGKTLAYSIPIIESLKDRVVPRVRAIVLVPTKPLINQVRATMLQLALGTNLN 332          
BLAST of CV712872 vs. ExPASy Swiss-Prot
Match: DDX51_DICDI (Probable ATP-dependent RNA helicase ddx51 OS=Dictyostelium discoideum GN=ddx51 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.373e-11
Identity = 39/91 (42.86%), Postives = 54/91 (59.34%), Query Frame = 2
Query:  458 LQNMGISSLFPVQ---VAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGL 721
            L+   I +LFPVQ   V     T G      D+C+ +PTGSGKTL+YA+P+VQ +  R VR +R  V++PT DL +QV+  F +I     L
Sbjct:   30 LKEQSIINLFPVQQEIVPFINRTEG-----HDICVCAPTGSGKTLAYAIPLVQKIVKRVVRRVRVAVIVPTHDLVIQVEKTFQSIIKGTDL 115          
The following BLAST results are available for this feature:
BLAST of CV712872 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
RH1_ARATH2.094e-5283.47DEAD-box ATP-dependent RNA helicase 1 OS=Arabidops... [more]
RH1_ORYSJ6.306e-4973.85DEAD-box ATP-dependent RNA helicase 1 OS=Oryza sat... [more]
DDX51_DANRE1.160e-1848.11ATP-dependent RNA helicase DDX51 OS=Danio rerio GN... [more]
DDX51_MOUSE1.675e-1744.96ATP-dependent RNA helicase DDX51 OS=Mus musculus G... [more]
DDX51_HUMAN3.731e-1742.75ATP-dependent RNA helicase DDX51 OS=Homo sapiens G... [more]
DBP6_PICGU2.264e-1439.06ATP-dependent RNA helicase DBP6 OS=Pichia guillier... [more]
DDX51_DROME5.043e-1442.34Probable ATP-dependent RNA helicase Dbp73D OS=Dros... [more]
DBP6_SCHPO1.242e-1237.12ATP-dependent RNA helicase dbp6 OS=Schizosaccharom... [more]
DBP6_LODEL6.165e-1232.03ATP-dependent RNA helicase DBP6 OS=Lodderomyces el... [more]
DDX51_DICDI1.373e-1142.86Probable ATP-dependent RNA helicase ddx51 OS=Dicty... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0002A05_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0002A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712872 ID=CV712872; Name=CV712872; organism=Citrus sinensis; type=EST; length=725bp
GCATAACACTCAACAACTAACCACACACCATCTTAAACTCTTCTTCTCTT
ACTGGCCGCCACACACGAGTAGTCAGCCACCGCTCATCATCTTCTCTTAG
CATCATCGTCATCAGCCTGTTACGGACTCCTGTTCAGCGCCATCTCCTCT
CACGGCAGCTCACAACACGCTGCAGCCTGCAGTCCGTCAAGCTTCCGTCA
GCGCCATCTCTCACGGAAACTCACAACACGCTGCAGCCTGCAATCCGTCA
AGCTTCTCACGCCATCGCCGTCACTAGTATTGCCGAACTGCTGTCAAGGA
CTCAAGGGTTTAGATTTGTCGGAGAAGAATAATGGAGGAAGCAAAGAAGA
AGAGCGTGCCAGTCTTGCCGTGGATGCGAAGCCCGGTTGATGTCAGTCTC
TTTGAAGACTGTCCTCTTGATCACCTCCCTTGTCTTGACCCCAGGTTGAA
GGTGGCTTTGCAGAACATGGGTATCTCGTCACTCTTCCCAGTGCAAGTTG
CAGTTTGGCAAGAGACAATAGGCCCTGGTCTATTTGAACGAGACCTTTGC
ATCAATTCACCTACAGGAAGTGGGAAAACTTTGTCTTATGCTTTGCCAAT
AGTTCAAACATTGTCCAATCGTGCTGTTAGATGTCTACGTGCTTTGGTGG
TGCTGCCCACGCGTGATCTAGCTTTGCAGGTCAAGGATGTTTTCGCTGCG
ATTGCACCTGCAGTGGGTTTGTCTG
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