CV712872
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV712872 vs. ExPASy Swiss-Prot
Match: RH1_ARATH (DEAD-box ATP-dependent RNA helicase 1 OS=Arabidopsis thaliana GN=RH1 PE=2 SV=2) HSP 1 Score: 205.682 bits (522), Expect = 2.094e-52 Identity = 101/121 (83.47%), Postives = 111/121 (91.74%), Query Frame = 2 Query: 362 VLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLS 724 V+PWMR+PVDVS E+C LD LPCL+P+LK AL+NMGISSLFPVQVAVW ETIGPG FERD+C+NSPTGSGKTLSYALPIVQ L++R VRCLRALVVLPTRDLALQVKDVF AIAPAVGLS Sbjct: 4 VVPWMRAPVDVSNVENCALDTLPCLNPKLKKALENMGISSLFPVQVAVWHETIGPGGFERDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQVKDVFDAIAPAVGLS 124
BLAST of CV712872 vs. ExPASy Swiss-Prot
Match: RH1_ORYSJ (DEAD-box ATP-dependent RNA helicase 1 OS=Oryza sativa subsp. japonica GN=Os02g0795900 PE=2 SV=1) HSP 1 Score: 194.126 bits (492), Expect = 6.306e-49 Identity = 96/130 (73.85%), Postives = 103/130 (79.23%), Query Frame = 2 Query: 335 EEAKKKSVPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLS 724 E VP LPWMR+PVD+ F CP+ HLP LDPRL LQ MGI S FPVQVA W ETIGPG FERD+CINSPTGSGKTL+YALPIVQ L+ R VRCLRALVVLPTRDLALQVK+VF AIAP VGLS Sbjct: 11 EGGPSSRVPHLPWMRNPVDIDSFSGCPVAHLPRLDPRLVKPLQRMGIESFFPVQVAAWLETIGPGAFERDICINSPTGSGKTLAYALPIVQMLATRKVRCLRALVVLPTRDLALQVKEVFDAIAPVVGLS 140
BLAST of CV712872 vs. ExPASy Swiss-Prot
Match: DDX51_DANRE (ATP-dependent RNA helicase DDX51 OS=Danio rerio GN=ddx51 PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.160e-18 Identity = 51/106 (48.11%), Postives = 69/106 (65.09%), Query Frame = 2 Query: 413 PLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQ---ETIGPGLF-------ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 700 P+ +P + P L LQ GI S FPVQ V E++G GL RD+C+++PTGSGKTL++ +P+VQ LS R VR +RAL VLPT++LA QV +VF+A Sbjct: 189 PISEVPGICPTLLRKLQTNGIQSFFPVQAEVIPAILESVGSGLLVGPGGYRPRDVCVSAPTGSGKTLAFVIPVVQALSKRVVRQVRALAVLPTKELAQQVSNVFSA 294
BLAST of CV712872 vs. ExPASy Swiss-Prot
Match: DDX51_MOUSE (ATP-dependent RNA helicase DDX51 OS=Mus musculus GN=Ddx51 PE=2 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.675e-17 Identity = 58/129 (44.96%), Postives = 80/129 (62.02%), Query Frame = 2 Query: 350 KSVPVLP-WMRSP--VDVSLFEDC-PLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQET---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 694 K P LP W+ P V S+ ED P++ +P + P L+ L+ GI+S FPVQ AV IG G ++ DLC+++PTGSGKTL++ +P+VQ L +R V +RALVVLPT++LA QV VF Sbjct: 145 KVQPFLPAWLAKPSCVKKSVTEDLTPIEDIPEVHPDLQKQLRANGITSYFPVQAAVIPALLESADHGFLIGRGGYQPSDLCVSAPTGSGKTLAFVIPVVQALLHRVVCHIRALVVLPTKELAQQVSKVF 273
BLAST of CV712872 vs. ExPASy Swiss-Prot
Match: DDX51_HUMAN (ATP-dependent RNA helicase DDX51 OS=Homo sapiens GN=DDX51 PE=1 SV=3) HSP 1 Score: 88.5817 bits (218), Expect = 3.731e-17 Identity = 59/138 (42.75%), Postives = 81/138 (58.70%), Query Frame = 2 Query: 350 KSVPVLP-WMRSP--VDVSLFEDC-PLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQET---------IGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGL 721 K P LP W+ P V ++ ED P++ +P + P L+ L+ GISS FPVQ AV +G G + DLC+++PTGSGKTL++ +P+VQ L +R V +RALVVLPT++LA QV VF A L Sbjct: 173 KVQPFLPRWLAEPNCVRRNVTEDLVPIEDIPDVHPDLQKQLRAHGISSYFPVQAAVIPALLESAACGFLVGRGGYRPSDLCVSAPTGSGKTLAFVIPVVQALLSRVVCHIRALVVLPTKELAQQVSKVFNIYTDATPL 310
BLAST of CV712872 vs. ExPASy Swiss-Prot
Match: DBP6_PICGU (ATP-dependent RNA helicase DBP6 OS=Pichia guilliermondii GN=DBP6 PE=3 SV=2) HSP 1 Score: 79.337 bits (194), Expect = 2.264e-14 Identity = 50/128 (39.06%), Postives = 72/128 (56.25%), Query Frame = 2 Query: 365 LPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQ--------ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLS 724 L W+ +P+ S E P +K LQ+ G SS F VQV+V + + I P + DL +N+ TGSGKTL YA+PI+++L NR V +RA+V++PT+ L QVK FA ++ LS Sbjct: 176 LDWLATPIYASTTETVPFSSFGLSSSMVK-NLQSNGFSSAFSVQVSVLKLLLPDMESQAIRPDI-GGDLLVNAATGSGKTLGYAIPIIESLRNRIVPRVRAIVLVPTKPLISQVKATFAMLSKNTNLS 301
BLAST of CV712872 vs. ExPASy Swiss-Prot
Match: DDX51_DROME (Probable ATP-dependent RNA helicase Dbp73D OS=Drosophila melanogaster GN=Dbp73D PE=2 SV=3) HSP 1 Score: 78.1814 bits (191), Expect = 5.043e-14 Identity = 58/137 (42.34%), Postives = 76/137 (55.47%), Query Frame = 2 Query: 341 AKKKSVPV-LP-WMRSPV-----DVSLFEDCP----LDHLPCLDPRLKVALQNMGISSLFPVQVAV--W---QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 703 AKKK V + LP W+ P + E+ P +D L L+ AL+ M I LFPVQ V W P RD+C+++PTGSGKTL++A+PIVQ LS R +RALVVLP +LALQV V + + Sbjct: 102 AKKKKVQMQLPNWLAHPTIIEGGSLQPEEEVPASEAIDQLDYLEKYTCQALKQMKIKRLFPVQKQVIPWILEAHAKPPPFRPRDICVSAPTGSGKTLAFAIPIVQLLSQRVDCKVRALVVLPVAELALQVYRVISEL 238
BLAST of CV712872 vs. ExPASy Swiss-Prot
Match: DBP6_SCHPO (ATP-dependent RNA helicase dbp6 OS=Schizosaccharomyces pombe GN=dbp6 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.242e-12 Identity = 49/132 (37.12%), Postives = 67/132 (50.76%), Query Frame = 2 Query: 347 KKSVPVLP-WMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGL------FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGL 721 K VLP W+ P+ V L + +L LQ I+ F VQ AV + G + D+C+++ TGSGKTLSY +PIVQ LS+R V LR +V++PTR+L +QV F GL Sbjct: 104 KNITSVLPKWLAEPITVDPNTTVEFSSLN-ISSKLVERLQKQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAKTFEYYMSGAGL 234
BLAST of CV712872 vs. ExPASy Swiss-Prot
Match: DBP6_LODEL (ATP-dependent RNA helicase DBP6 OS=Lodderomyces elongisporus GN=DBP6 PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.165e-12 Identity = 41/128 (32.03%), Postives = 72/128 (56.25%), Query Frame = 2 Query: 365 LPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIG--------PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLS 724 L W+ +P +++ + P P L P + L+++G + F VQV V + + P F D+ +N+ TGSGKTL+Y++PI+++L +R V +RA+V++PT+ L QV+ +A L+ Sbjct: 207 LDWLTTPEYIAIADTKPFSEFP-LSPFMHENLESLGFENAFAVQVGVLSKLLPEIQANKLRPDAFG-DVLVNASTGSGKTLAYSIPIIESLKDRVVPRVRAIVLVPTKPLINQVRATMLQLALGTNLN 332
BLAST of CV712872 vs. ExPASy Swiss-Prot
Match: DDX51_DICDI (Probable ATP-dependent RNA helicase ddx51 OS=Dictyostelium discoideum GN=ddx51 PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.373e-11 Identity = 39/91 (42.86%), Postives = 54/91 (59.34%), Query Frame = 2 Query: 458 LQNMGISSLFPVQ---VAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGL 721 L+ I +LFPVQ V T G D+C+ +PTGSGKTL+YA+P+VQ + R VR +R V++PT DL +QV+ F +I L Sbjct: 30 LKEQSIINLFPVQQEIVPFINRTEG-----HDICVCAPTGSGKTLAYAIPLVQKIVKRVVRRVRVAVIVPTHDLVIQVEKTFQSIIKGTDL 115 The following BLAST results are available for this feature:
BLAST of CV712872 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 12
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Sequences
The
following sequences are available for this feature:
EST sequence >CV712872 ID=CV712872; Name=CV712872; organism=Citrus sinensis; type=EST; length=725bpback to top |