CV712551

Overview
NameCV712551
Unique NameCV712551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2930 contig Csv1_Contig2930:1..795. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRFC_ARATH (Ribosome-recycling factor, chloroplastic OS=Arabidopsis thaliana GN=RRF PE=1 SV=2)

HSP 1 Score: 284.648 bits (727), Expect = 4.145e-76
Identity = 159/253 (62.85%), Postives = 191/253 (75.49%), Query Frame = 2
Query:   50 MATHFSSTGPMRSIFQLKSNPPKCLLFLPDSCHRRAETATCRASSVSVRQWSSTANYSRL-----VKLSNKPIVVRQLAHKRNGVVRCATXXXXXXXXXXXXXDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLS 793
            MA  FSST P   + + ++N  K LL LPDSC R   +A     S S R  + +    +L     V LS  P+V R L  ++  V+R AT             DVK++ME+TI+ +RT+FNS+RTGRSN AMLDKIEVEYYGSPVSLKSIAQI+TPD SSLL+QPYDKSSLK+IEKAIV+SDLG+TPNNDG+VIRL+LP LTS+RRKELSKVVAKQ+EEGKVA+RNIRRDALK+Y+KL+KEKKLSEDNVKDLS
Sbjct:    1 MAASFSSTAPTTPVLRFRANYSKPLLSLPDSCLRIISSAI----SPSTRLIACSFKTDKLPLGAGVNLSGGPVVKRSL--QKRLVIRSATIEEIEAEKSAIETDVKSKMEKTIETLRTSFNSIRTGRSNAAMLDKIEVEYYGSPVSLKSIAQISTPDGSSLLLQPYDKSSLKAIEKAIVNSDLGVTPNNDGDVIRLSLPPLTSDRRKELSKVVAKQSEEGKVALRNIRRDALKSYDKLEKEKKLSEDNVKDLS 247          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRFC_SPIOL (Ribosome-recycling factor, chloroplastic OS=Spinacia oleracea GN=RRF PE=1 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 5.243e-71
Identity = 141/212 (66.51%), Postives = 169/212 (79.72%), Query Frame = 2
Query:  170 CRASSVSVRQWSSTANYSRL----VKLSNKPIVVRQLAHKRNGVVRCATXXXXXXXXXXXXXDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLS 793
            C  +  +V  W S+ANY R+     K S K +VV+QL + R G  RCAT             + K RME+TI+ +R+NFNSVRT R++P MLD+IEVEYYG+PVSLKSIAQI+TPD+SSLLI PYDKSSLK+IEKAIV+S LG++PNNDGEVIRL+LP LTS+RRKEL+KVV+K AEEGKVAVRNIRRDALK+YEKL+KEKKLSEDNVKDLS
Sbjct:   33 CNIARTNVSVWRSSANYVRMDCGVKKFSGKAVVVKQLQN-RAGTFRCATMEEVEAEKSLIETNTKQRMEKTIETIRSNFNSVRTNRASPTMLDRIEVEYYGTPVSLKSIAQISTPDASSLLISPYDKSSLKAIEKAIVTSQLGVSPNNDGEVIRLSLPPLTSDRRKELAKVVSKLAEEGKVAVRNIRRDALKSYEKLEKEKKLSEDNVKDLS 243          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRFC_DAUCA (Ribosome-recycling factor, chloroplastic (Fragment) OS=Daucus carota GN=RRF PE=2 SV=2)

HSP 1 Score: 260.766 bits (665), Expect = 6.409e-69
Identity = 133/202 (65.84%), Postives = 164/202 (81.19%), Query Frame = 2
Query:  200 WSSTANYSRLV----KLSNKPIVVRQLAHKRNGVVRCATXXXXXXXXXXXXXDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLS 793
            W++ ANY ++     K + K +V+ Q   KR G ++CAT              VK RME+TI+ V+ +FNS+RT RSNP MLDKI+VEYYG+P SLKSIAQI+TPDSSSLL+ PYDKSSLK IEKAIV+SDLG+TPNNDG+VIRL++PQLT++RRKELSK+VAKQAEEGKVA+RNIRRDA+K+Y+KL+KEKKLSEDNVKDLS
Sbjct:    1 WTAAANYVKIKVGTGKFARKTVVLSQ---KRTGTLKCATMEEIEAEKSLIEKSVKERMEKTIENVKASFNSIRTXRSNPDMLDKIKVEYYGTPTSLKSIAQISTPDSSSLLVNPYDKSSLKDIEKAIVNSDLGITPNNDGDVIRLSIPQLTADRRKELSKIVAKQAEEGKVALRNIRRDAIKSYDKLEKEKKLSEDNVKDLS 199          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRFC_ORYSJ (Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0570700 PE=2 SV=2)

HSP 1 Score: 240.35 bits (612), Expect = 8.964e-63
Identity = 124/201 (61.69%), Postives = 160/201 (79.60%), Query Frame = 2
Query:  203 SSTANYSRL----VKLSNKPIVVRQLAHKRNGVVRCATXXXXXXXXXXXXXDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLS 793
            SS+ N+  L    ++  ++P++++     +  V+R AT               + RME+ I+ V+ NFN+VRTGR+NPAMLD+IEVEYYG+PV+LKSIAQINTPD++SLLIQPYDKSSLK IEK IV+++LG+TP+NDGEVIR+T+P LTS+RRKEL+K VAK AEEGKVA+RNIRRDA+KAY+KL+KEKKLSEDNVKDLS
Sbjct:   40 SSSTNFMSLRAGPMRFYSRPLILQN--SDKRAVLRHATIEEIEAEKSVIEDQARERMEKAIETVQNNFNTVRTGRANPAMLDRIEVEYYGTPVNLKSIAQINTPDATSLLIQPYDKSSLKLIEKTIVAANLGVTPSNDGEVIRVTVPPLTSDRRKELAKTVAKLAEEGKVAIRNIRRDAIKAYDKLEKEKKLSEDNVKDLS 238          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRFC_ORYSI (Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_26546 PE=1 SV=2)

HSP 1 Score: 240.35 bits (612), Expect = 8.964e-63
Identity = 124/201 (61.69%), Postives = 160/201 (79.60%), Query Frame = 2
Query:  203 SSTANYSRL----VKLSNKPIVVRQLAHKRNGVVRCATXXXXXXXXXXXXXDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLS 793
            SS+ N+  L    ++  ++P++++     +  V+R AT               + RME+ I+ V+ NFN+VRTGR+NPAMLD+IEVEYYG+PV+LKSIAQINTPD++SLLIQPYDKSSLK IEK IV+++LG+TP+NDGEVIR+T+P LTS+RRKEL+K VAK AEEGKVA+RNIRRDA+KAY+KL+KEKKLSEDNVKDLS
Sbjct:   40 SSSTNFMSLRAGPMRFYSRPLILQN--SDKRAVLRHATIEEIEAEKSVIEDQARERMEKAIETVQNNFNTVRTGRANPAMLDRIEVEYYGTPVNLKSIAQINTPDATSLLIQPYDKSSLKLIEKTIVAANLGVTPSNDGEVIRVTVPPLTSDRRKELAKTVAKLAEEGKVAIRNIRRDAIKAYDKLEKEKKLSEDNVKDLS 238          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_ANASP (Ribosome-recycling factor OS=Anabaena sp. (strain PCC 7120) GN=frr PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.837e-46
Identity = 85/148 (57.43%), Postives = 120/148 (81.08%), Query Frame = 2
Query:  344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKD 787
            + +++M+ T++  +  FN++RTGR+N ++LDK+ V+YYGSP  LKS+A I+TPD++++LIQPYDKSSL  +EKAI  SD+G+TP+NDG VIRL +P LTS+RRKEL K+ AK AEEG+VA+RNIRRDA+ +  KL+K  ++SED  KD
Sbjct:    5 EAESKMQHTVEATQRAFNTIRTGRANASLLDKVLVDYYGSPTPLKSLANISTPDATTILIQPYDKSSLNIVEKAISLSDVGLTPSNDGAVIRLNIPPLTSDRRKELVKIAAKYAEEGRVAIRNIRRDAVDSIRKLEKNAEVSEDEAKD 152          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_SYNP6 (Ribosome-recycling factor OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=frr PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.698e-45
Identity = 84/148 (56.76%), Postives = 122/148 (82.43%), Query Frame = 2
Query:  344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKD 787
            DV++ M+++++    +FN++RTGR+N ++LDKI V+YYGS   LKS+A I+TPD+S+L IQP+D+SS+ +IEKAI  SD+G+TPNNDG++IRL +P LTS+RRKEL K+ AK AEEGKVA+RN+RRDA+ +  KL+K  ++SED+ +D
Sbjct:    5 DVESTMQKSVEATLRSFNTIRTGRANASLLDKIVVDYYGSETPLKSLASISTPDASTLQIQPFDRSSMGAIEKAISLSDIGLTPNNDGQIIRLNIPPLTSDRRKELVKLAAKYAEEGKVAIRNVRRDAIDSIRKLEKSGEISEDDARD 152          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_SYNE7 (Ribosome-recycling factor OS=Synechococcus elongatus (strain PCC 7942) GN=frr PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.698e-45
Identity = 84/148 (56.76%), Postives = 122/148 (82.43%), Query Frame = 2
Query:  344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKD 787
            DV++ M+++++    +FN++RTGR+N ++LDKI V+YYGS   LKS+A I+TPD+S+L IQP+D+SS+ +IEKAI  SD+G+TPNNDG++IRL +P LTS+RRKEL K+ AK AEEGKVA+RN+RRDA+ +  KL+K  ++SED+ +D
Sbjct:    5 DVESTMQKSVEATLRSFNTIRTGRANASLLDKIVVDYYGSETPLKSLASISTPDASTLQIQPFDRSSMGAIEKAISLSDIGLTPNNDGQIIRLNIPPLTSDRRKELVKLAAKYAEEGKVAIRNVRRDAIDSIRKLEKSGEISEDDARD 152          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_SYNJB (Ribosome-recycling factor OS=Synechococcus sp. GN=frr PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 8.429e-45
Identity = 85/149 (57.05%), Postives = 119/149 (79.87%), Query Frame = 2
Query:  344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDL 790
            +++  M + +   + +FN+VRTGR+N ++LD+I+VEYYG P  LK++A + TPDSS+LLIQP+D S+L +IE+AIV+SDLG+TP+NDG+V+RLT+P LT ERRKELSK VAK AEEG+V++RNIRRD + +  K +K  +LSED  K L
Sbjct:    5 EIEELMNKAVQATQRSFNTVRTGRANSSLLDRIQVEYYGVPTPLKALASLTTPDSSTLLIQPFDPSTLAAIERAIVASDLGLTPSNDGKVVRLTIPPLTEERRKELSKQVAKLAEEGRVSIRNIRRDGIDSVRKREKNGELSEDESKSL 153          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_THEEB (Ribosome-recycling factor OS=Thermosynechococcus elongatus (strain BP-1) GN=frr PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.878e-44
Identity = 85/149 (57.05%), Postives = 119/149 (79.87%), Query Frame = 2
Query:  344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDL 790
            DV+ RM+++++  + +FNS+RTGR+N A+LD++ V+YYG+   L+S+A ++TPD++++LIQPYD+S+L SIEKAI  SDLG+TPNNDG  +RL +P LT+ERRKEL K  AK AE GKVA+RNIRRDA+   +K  K  +L+ED VKDL
Sbjct:    5 DVEERMQKSVEATQHDFNSIRTGRANAALLDRVMVDYYGTETPLRSLANVSTPDATTILIQPYDRSTLASIEKAIQLSDLGLTPNNDGSSVRLNIPPLTTERRKELVKTAAKIAEGGKVAIRNIRRDAIDHIKKAGKAGELTEDEVKDL 153          
The following BLAST results are available for this feature:
BLAST of CV712551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRFC_ARATH4.145e-7662.85Ribosome-recycling factor, chloroplastic OS=Arabid... [more]
RRFC_SPIOL5.243e-7166.51Ribosome-recycling factor, chloroplastic OS=Spinac... [more]
RRFC_DAUCA6.409e-6965.84Ribosome-recycling factor, chloroplastic (Fragment... [more]
RRFC_ORYSJ8.964e-6361.69Ribosome-recycling factor, chloroplastic OS=Oryza ... [more]
RRFC_ORYSI8.964e-6361.69Ribosome-recycling factor, chloroplastic OS=Oryza ... [more]
RRF_ANASP5.837e-4657.43Ribosome-recycling factor OS=Anabaena sp. (strain ... [more]
RRF_SYNP61.698e-4556.76Ribosome-recycling factor OS=Synechococcus sp. (st... [more]
RRF_SYNE71.698e-4556.76Ribosome-recycling factor OS=Synechococcus elongat... [more]
RRF_SYNJB8.429e-4557.05Ribosome-recycling factor OS=Synechococcus sp. GN=... [more]
RRF_THEEB1.878e-4457.05Ribosome-recycling factor OS=Thermosynechococcus e... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I21_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712551 ID=CV712551; Name=CV712551; organism=Citrus sinensis; type=EST; length=795bp
AAGACACTCATTTTGAACCAACTAATTTCTTAAGTCTGAGCGAGCGTTCA
TGGCCACGCACTTTTCTTCAACAGGGCCCATGCGGTCCATTTTCCAACTG
AAATCAAATCCTCCCAAATGCCTCCTTTTCCTCCCTGATTCTTGTCATAG
AAGAGCCGAAACTGCCACGTGCCGTGCTAGCAGCGTTAGTGTGCGCCAGT
GGAGCTCAACTGCAAACTACTCTAGACTTGTGAAATTATCCAACAAACCT
ATCGTTGTAAGACAACTGGCACACAAGAGAAATGGAGTTGTGAGGTGTGC
AACTATTGAAGAAATTGAAGCGGAAAAATCTTCCATTGAGAAGGATGTTA
AAGCTAGGATGGAAAGGACTATCGATATGGTCCGAACCAATTTCAATTCC
GTGAGGACAGGAAGATCGAATCCAGCTATGCTAGATAAGATTGAGGTGGA
ATACTATGGAAGCCCAGTAAGTTTGAAGAGCATAGCTCAAATCAATACCC
CTGATTCAAGTTCTCTATTGATTCAACCATATGACAAATCCAGCTTAAAG
TCTATAGAGAAGGCCATAGTAAGCTCTGATCTTGGCATGACCCCAAACAA
TGATGGTGAAGTCATACGGTTAACCCTTCCTCAATTGACATCCGAAAGGA
GGAAGGAACTGTCAAAGGTTGTGGCCAAACAGGCTGAAGAAGGGAAGGTG
GCAGTTAGGAATATAAGAAGAGATGCGTTAAAAGCTTATGAAAAACTTCA
GAAGGAGAAGAAGCTCTCTGAAGACAATGTGAAGGACTTGTCAAG
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