CV712551
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRFC_ARATH (Ribosome-recycling factor, chloroplastic OS=Arabidopsis thaliana GN=RRF PE=1 SV=2) HSP 1 Score: 284.648 bits (727), Expect = 4.145e-76 Identity = 159/253 (62.85%), Postives = 191/253 (75.49%), Query Frame = 2 Query: 50 MATHFSSTGPMRSIFQLKSNPPKCLLFLPDSCHRRAETATCRASSVSVRQWSSTANYSRL-----VKLSNKPIVVRQLAHKRNGVVRCATXXXXXXXXXXXXXDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLS 793 MA FSST P + + ++N K LL LPDSC R +A S S R + + +L V LS P+V R L ++ V+R AT DVK++ME+TI+ +RT+FNS+RTGRSN AMLDKIEVEYYGSPVSLKSIAQI+TPD SSLL+QPYDKSSLK+IEKAIV+SDLG+TPNNDG+VIRL+LP LTS+RRKELSKVVAKQ+EEGKVA+RNIRRDALK+Y+KL+KEKKLSEDNVKDLS Sbjct: 1 MAASFSSTAPTTPVLRFRANYSKPLLSLPDSCLRIISSAI----SPSTRLIACSFKTDKLPLGAGVNLSGGPVVKRSL--QKRLVIRSATIEEIEAEKSAIETDVKSKMEKTIETLRTSFNSIRTGRSNAAMLDKIEVEYYGSPVSLKSIAQISTPDGSSLLLQPYDKSSLKAIEKAIVNSDLGVTPNNDGDVIRLSLPPLTSDRRKELSKVVAKQSEEGKVALRNIRRDALKSYDKLEKEKKLSEDNVKDLS 247
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRFC_SPIOL (Ribosome-recycling factor, chloroplastic OS=Spinacia oleracea GN=RRF PE=1 SV=1) HSP 1 Score: 267.7 bits (683), Expect = 5.243e-71 Identity = 141/212 (66.51%), Postives = 169/212 (79.72%), Query Frame = 2 Query: 170 CRASSVSVRQWSSTANYSRL----VKLSNKPIVVRQLAHKRNGVVRCATXXXXXXXXXXXXXDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLS 793 C + +V W S+ANY R+ K S K +VV+QL + R G RCAT + K RME+TI+ +R+NFNSVRT R++P MLD+IEVEYYG+PVSLKSIAQI+TPD+SSLLI PYDKSSLK+IEKAIV+S LG++PNNDGEVIRL+LP LTS+RRKEL+KVV+K AEEGKVAVRNIRRDALK+YEKL+KEKKLSEDNVKDLS Sbjct: 33 CNIARTNVSVWRSSANYVRMDCGVKKFSGKAVVVKQLQN-RAGTFRCATMEEVEAEKSLIETNTKQRMEKTIETIRSNFNSVRTNRASPTMLDRIEVEYYGTPVSLKSIAQISTPDASSLLISPYDKSSLKAIEKAIVTSQLGVSPNNDGEVIRLSLPPLTSDRRKELAKVVSKLAEEGKVAVRNIRRDALKSYEKLEKEKKLSEDNVKDLS 243
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRFC_DAUCA (Ribosome-recycling factor, chloroplastic (Fragment) OS=Daucus carota GN=RRF PE=2 SV=2) HSP 1 Score: 260.766 bits (665), Expect = 6.409e-69 Identity = 133/202 (65.84%), Postives = 164/202 (81.19%), Query Frame = 2 Query: 200 WSSTANYSRLV----KLSNKPIVVRQLAHKRNGVVRCATXXXXXXXXXXXXXDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLS 793 W++ ANY ++ K + K +V+ Q KR G ++CAT VK RME+TI+ V+ +FNS+RT RSNP MLDKI+VEYYG+P SLKSIAQI+TPDSSSLL+ PYDKSSLK IEKAIV+SDLG+TPNNDG+VIRL++PQLT++RRKELSK+VAKQAEEGKVA+RNIRRDA+K+Y+KL+KEKKLSEDNVKDLS Sbjct: 1 WTAAANYVKIKVGTGKFARKTVVLSQ---KRTGTLKCATMEEIEAEKSLIEKSVKERMEKTIENVKASFNSIRTXRSNPDMLDKIKVEYYGTPTSLKSIAQISTPDSSSLLVNPYDKSSLKDIEKAIVNSDLGITPNNDGDVIRLSIPQLTADRRKELSKIVAKQAEEGKVALRNIRRDAIKSYDKLEKEKKLSEDNVKDLS 199
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRFC_ORYSJ (Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0570700 PE=2 SV=2) HSP 1 Score: 240.35 bits (612), Expect = 8.964e-63 Identity = 124/201 (61.69%), Postives = 160/201 (79.60%), Query Frame = 2 Query: 203 SSTANYSRL----VKLSNKPIVVRQLAHKRNGVVRCATXXXXXXXXXXXXXDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLS 793 SS+ N+ L ++ ++P++++ + V+R AT + RME+ I+ V+ NFN+VRTGR+NPAMLD+IEVEYYG+PV+LKSIAQINTPD++SLLIQPYDKSSLK IEK IV+++LG+TP+NDGEVIR+T+P LTS+RRKEL+K VAK AEEGKVA+RNIRRDA+KAY+KL+KEKKLSEDNVKDLS Sbjct: 40 SSSTNFMSLRAGPMRFYSRPLILQN--SDKRAVLRHATIEEIEAEKSVIEDQARERMEKAIETVQNNFNTVRTGRANPAMLDRIEVEYYGTPVNLKSIAQINTPDATSLLIQPYDKSSLKLIEKTIVAANLGVTPSNDGEVIRVTVPPLTSDRRKELAKTVAKLAEEGKVAIRNIRRDAIKAYDKLEKEKKLSEDNVKDLS 238
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRFC_ORYSI (Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_26546 PE=1 SV=2) HSP 1 Score: 240.35 bits (612), Expect = 8.964e-63 Identity = 124/201 (61.69%), Postives = 160/201 (79.60%), Query Frame = 2 Query: 203 SSTANYSRL----VKLSNKPIVVRQLAHKRNGVVRCATXXXXXXXXXXXXXDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLS 793 SS+ N+ L ++ ++P++++ + V+R AT + RME+ I+ V+ NFN+VRTGR+NPAMLD+IEVEYYG+PV+LKSIAQINTPD++SLLIQPYDKSSLK IEK IV+++LG+TP+NDGEVIR+T+P LTS+RRKEL+K VAK AEEGKVA+RNIRRDA+KAY+KL+KEKKLSEDNVKDLS Sbjct: 40 SSSTNFMSLRAGPMRFYSRPLILQN--SDKRAVLRHATIEEIEAEKSVIEDQARERMEKAIETVQNNFNTVRTGRANPAMLDRIEVEYYGTPVNLKSIAQINTPDATSLLIQPYDKSSLKLIEKTIVAANLGVTPSNDGEVIRVTVPPLTSDRRKELAKTVAKLAEEGKVAIRNIRRDAIKAYDKLEKEKKLSEDNVKDLS 238
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_ANASP (Ribosome-recycling factor OS=Anabaena sp. (strain PCC 7120) GN=frr PE=3 SV=1) HSP 1 Score: 184.496 bits (467), Expect = 5.837e-46 Identity = 85/148 (57.43%), Postives = 120/148 (81.08%), Query Frame = 2 Query: 344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKD 787 + +++M+ T++ + FN++RTGR+N ++LDK+ V+YYGSP LKS+A I+TPD++++LIQPYDKSSL +EKAI SD+G+TP+NDG VIRL +P LTS+RRKEL K+ AK AEEG+VA+RNIRRDA+ + KL+K ++SED KD Sbjct: 5 EAESKMQHTVEATQRAFNTIRTGRANASLLDKVLVDYYGSPTPLKSLANISTPDATTILIQPYDKSSLNIVEKAISLSDVGLTPSNDGAVIRLNIPPLTSDRRKELVKIAAKYAEEGRVAIRNIRRDAVDSIRKLEKNAEVSEDEAKD 152
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_SYNP6 (Ribosome-recycling factor OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=frr PE=3 SV=1) HSP 1 Score: 182.956 bits (463), Expect = 1.698e-45 Identity = 84/148 (56.76%), Postives = 122/148 (82.43%), Query Frame = 2 Query: 344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKD 787 DV++ M+++++ +FN++RTGR+N ++LDKI V+YYGS LKS+A I+TPD+S+L IQP+D+SS+ +IEKAI SD+G+TPNNDG++IRL +P LTS+RRKEL K+ AK AEEGKVA+RN+RRDA+ + KL+K ++SED+ +D Sbjct: 5 DVESTMQKSVEATLRSFNTIRTGRANASLLDKIVVDYYGSETPLKSLASISTPDASTLQIQPFDRSSMGAIEKAISLSDIGLTPNNDGQIIRLNIPPLTSDRRKELVKLAAKYAEEGKVAIRNVRRDAIDSIRKLEKSGEISEDDARD 152
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_SYNE7 (Ribosome-recycling factor OS=Synechococcus elongatus (strain PCC 7942) GN=frr PE=3 SV=1) HSP 1 Score: 182.956 bits (463), Expect = 1.698e-45 Identity = 84/148 (56.76%), Postives = 122/148 (82.43%), Query Frame = 2 Query: 344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKD 787 DV++ M+++++ +FN++RTGR+N ++LDKI V+YYGS LKS+A I+TPD+S+L IQP+D+SS+ +IEKAI SD+G+TPNNDG++IRL +P LTS+RRKEL K+ AK AEEGKVA+RN+RRDA+ + KL+K ++SED+ +D Sbjct: 5 DVESTMQKSVEATLRSFNTIRTGRANASLLDKIVVDYYGSETPLKSLASISTPDASTLQIQPFDRSSMGAIEKAISLSDIGLTPNNDGQIIRLNIPPLTSDRRKELVKLAAKYAEEGKVAIRNVRRDAIDSIRKLEKSGEISEDDARD 152
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_SYNJB (Ribosome-recycling factor OS=Synechococcus sp. GN=frr PE=3 SV=1) HSP 1 Score: 180.644 bits (457), Expect = 8.429e-45 Identity = 85/149 (57.05%), Postives = 119/149 (79.87%), Query Frame = 2 Query: 344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDL 790 +++ M + + + +FN+VRTGR+N ++LD+I+VEYYG P LK++A + TPDSS+LLIQP+D S+L +IE+AIV+SDLG+TP+NDG+V+RLT+P LT ERRKELSK VAK AEEG+V++RNIRRD + + K +K +LSED K L Sbjct: 5 EIEELMNKAVQATQRSFNTVRTGRANSSLLDRIQVEYYGVPTPLKALASLTTPDSSTLLIQPFDPSTLAAIERAIVASDLGLTPSNDGKVVRLTIPPLTEERRKELSKQVAKLAEEGRVSIRNIRRDGIDSVRKREKNGELSEDESKSL 153
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_THEEB (Ribosome-recycling factor OS=Thermosynechococcus elongatus (strain BP-1) GN=frr PE=3 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 1.878e-44 Identity = 85/149 (57.05%), Postives = 119/149 (79.87%), Query Frame = 2 Query: 344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDL 790 DV+ RM+++++ + +FNS+RTGR+N A+LD++ V+YYG+ L+S+A ++TPD++++LIQPYD+S+L SIEKAI SDLG+TPNNDG +RL +P LT+ERRKEL K AK AE GKVA+RNIRRDA+ +K K +L+ED VKDL Sbjct: 5 DVEERMQKSVEATQHDFNSIRTGRANAALLDRVMVDYYGTETPLRSLANVSTPDATTILIQPYDRSTLASIEKAIQLSDLGLTPNNDGSSVRLNIPPLTTERRKELVKTAAKIAEGGKVAIRNIRRDAIDHIKKAGKAGELTEDEVKDL 153 The following BLAST results are available for this feature:
BLAST of CV712551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CV712551 ID=CV712551; Name=CV712551; organism=Citrus sinensis; type=EST; length=795bpback to top |