CV712274

Overview
NameCV712274
Unique NameCV712274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length545
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712274 vs. ExPASy Swiss-Prot
Match: DEF06_ARATH (Defensin-like protein 6 OS=Arabidopsis thaliana GN=PDF2.5 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.272e-18
Identity = 36/57 (63.16%), Postives = 45/57 (78.95%), Query Frame = 1
Query:   91 ASQMMVPAEGRVCQSQSHHFHGACFSHHNCAFVCRNEGFSGGKCRGVRRRCFCSKLC 261
            +SQ ++  EGR CQS+SHHF   C S+HNCA VCRNEGFSGG+C G  RRC+C++LC
Sbjct:   17 SSQEIIGGEGRTCQSKSHHFKYMCTSNHNCAIVCRNEGFSGGRCHGFHRRCYCTRLC 73          
BLAST of CV712274 vs. ExPASy Swiss-Prot
Match: DEF_SOYBN (Defensin-like protein OS=Glycine max PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.521e-18
Identity = 38/57 (66.67%), Postives = 46/57 (80.70%), Query Frame = 1
Query:   91 ASQMMVPAEGRVCQSQSHHFHGACFSHHNCAFVCRNEGFSGGKCRGVRRRCFCSKLC 261
            ASQ++V  EGRVC+SQSH FHG C   HNCA VCRNEGFSGG+C+   RRCFC+++C
Sbjct:   19 ASQVVVQTEGRVCESQSHGFHGLCNRDHNCALVCRNEGFSGGRCKR-SRRCFCTRIC 74          
BLAST of CV712274 vs. ExPASy Swiss-Prot
Match: DEF1_VIGUN (Defensin-like protein 1 OS=Vigna unguiculata PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.063e-16
Identity = 35/47 (74.47%), Postives = 37/47 (78.72%), Query Frame = 1
Query:  121 RVCQSQSHHFHGACFSHHNCAFVCRNEGFSGGKCRGVRRRCFCSKLC 261
            RVC+SQSH F GAC   HNCA VCRNEGFSGG CRG RRRCFC+  C
Sbjct:    1 RVCESQSHGFKGACTGDHNCALVCRNEGFSGGNCRGFRRRCFCTLKC 47          
BLAST of CV712274 vs. ExPASy Swiss-Prot
Match: DEF01_ARATH (Defensin-like protein 1 OS=Arabidopsis thaliana GN=PDF2.3 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.520e-15
Identity = 33/52 (63.46%), Postives = 38/52 (73.08%), Query Frame = 1
Query:  106 VPAEGRVCQSQSHHFHGACFSHHNCAFVCRNEGFSGGKCRGVRRRCFCSKLC 261
            V  E R C+S+SH F G C S HNCA VC NEGF GGKCRG RRRC+C++ C
Sbjct:   26 VTVEARTCESKSHRFKGPCVSTHNCANVCHNEGFGGGKCRGFRRRCYCTRHC 77          
BLAST of CV712274 vs. ExPASy Swiss-Prot
Match: DEF_PETIN (Defensin-like protein OS=Petunia integrifolia PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.853e-15
Identity = 32/53 (60.38%), Postives = 36/53 (67.92%), Query Frame = 1
Query:  103 MVPAEGRVCQSQSHHFHGACFSHHNCAFVCRNEGFSGGKCRGVRRRCFCSKLC 261
            M  AE R C+SQSH FHG C    NCA VC+ EGF GG CR  RRRCFC++ C
Sbjct:   26 MTSAEARTCESQSHRFHGTCVRESNCASVCQTEGFIGGNCRAFRRRCFCTRNC 78          
BLAST of CV712274 vs. ExPASy Swiss-Prot
Match: DEF2_CAPAN (Defensin J1-2 OS=Capsicum annuum PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.853e-15
Identity = 32/50 (64.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query:  112 AEGRVCQSQSHHFHGACFSHHNCAFVCRNEGFSGGKCRGVRRRCFCSKLC 261
            AE R C+SQSH F G CFS  NC  VC  EGF+GG CRG RRRCFC++ C
Sbjct:   25 AEARTCESQSHRFKGLCFSKSNCGSVCHTEGFNGGHCRGFRRRCFCTRHC 74          
BLAST of CV712274 vs. ExPASy Swiss-Prot
Match: DEF02_ARATH (Defensin-like protein 2 OS=Arabidopsis thaliana GN=PDF2.2 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.287e-14
Identity = 33/52 (63.46%), Postives = 36/52 (69.23%), Query Frame = 1
Query:  106 VPAEGRVCQSQSHHFHGACFSHHNCAFVCRNEGFSGGKCRGVRRRCFCSKLC 261
            V  E R C+SQSH F G C S  NCA VC NEGF GG CRG RRRCFC++ C
Sbjct:   26 VTVEARTCESQSHRFKGTCVSASNCANVCHNEGFVGGNCRGFRRRCFCTRHC 77          
BLAST of CV712274 vs. ExPASy Swiss-Prot
Match: DFSD2_HELAN (Defensin SD2 OS=Helianthus annuus GN=SD2 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.744e-14
Identity = 38/77 (49.35%), Postives = 45/77 (58.44%), Query Frame = 1
Query:   37 KTNMKSXXXXXXXXXXXXASQMMVP--AEGRVCQSQSHHFHGACFSHHNCAFVCRNEGFSGGKCRGVRRRCFCSKLC 261
            K++MK             A++M  P   E R C+SQSH F G C S  NCA VC +E FSGGKCRG RRRCFC+  C
Sbjct:    2 KSSMKMFAALLLVVMCLLANEMGGPLVVEARTCESQSHKFKGTCLSDTNCANVCHSERFSGGKCRGFRRRCFCTTHC 78          
BLAST of CV712274 vs. ExPASy Swiss-Prot
Match: DEF_NELNU (Defensin-like protein OS=Nelumbo nucifera PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.386e-14
Identity = 32/50 (64.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query:  112 AEGRVCQSQSHHFHGACFSHHNCAFVCRNEGFSGGKCRGVRRRCFCSKLC 261
            AE R C+SQSH F GAC S  NCA VC+ EGF  G C+G RRRCFC K C
Sbjct:   28 AEARTCESQSHRFKGACLSDTNCASVCQTEGFPAGDCKGARRRCFCVKPC 77          
BLAST of CV712274 vs. ExPASy Swiss-Prot
Match: DEF11_TRIKH (Defensin Tk-AMP-D1.1 OS=Triticum kiharae PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.204e-12
Identity = 30/47 (63.83%), Postives = 35/47 (74.47%), Query Frame = 1
Query:  121 RVCQSQSHHFHGACFSHHNCAFVCRNEGFSGGKCRGVRRRCFCSKLC 261
            R C+S SH FHGACFS  NCA VC+ EGF+ GKC GV+R C C+K C
Sbjct:    1 RDCESDSHKFHGACFSDTNCANVCQTEGFTAGKCVGVQRHCHCTKDC 47          
The following BLAST results are available for this feature:
BLAST of CV712274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
DEF06_ARATH3.272e-1863.16Defensin-like protein 6 OS=Arabidopsis thaliana GN... [more]
DEF_SOYBN9.521e-1866.67Defensin-like protein OS=Glycine max PE=3 SV=1[more]
DEF1_VIGUN3.063e-1674.47Defensin-like protein 1 OS=Vigna unguiculata PE=1 ... [more]
DEF01_ARATH1.520e-1563.46Defensin-like protein 1 OS=Arabidopsis thaliana GN... [more]
DEF_PETIN9.853e-1560.38Defensin-like protein OS=Petunia integrifolia PE=2... [more]
DEF2_CAPAN9.853e-1564.00Defensin J1-2 OS=Capsicum annuum PE=1 SV=1[more]
DEF02_ARATH1.287e-1463.46Defensin-like protein 2 OS=Arabidopsis thaliana GN... [more]
DFSD2_HELAN3.744e-1449.35Defensin SD2 OS=Helianthus annuus GN=SD2 PE=2 SV=1[more]
DEF_NELNU6.386e-1464.00Defensin-like protein OS=Nelumbo nucifera PE=3 SV=... [more]
DEF11_TRIKH1.204e-1263.83Defensin Tk-AMP-D1.1 OS=Triticum kiharae PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001C15_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001C15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712274 ID=CV712274; Name=CV712274; organism=Citrus sinensis; type=EST; length=545bp
TGTGATTGTGGCTGCGAAATTTACGAGCTAAAAGAAAAAACAAATATGAA
GAGTTTCTTTGGGATTTTCTTGCTGCTGCTCATTCTATTTGCTTCTCAGA
TGATGGTGCCGGCAGAGGGTAGGGTGTGTCAGTCACAGAGCCATCATTTC
CATGGCGCATGCTTTAGCCACCACAACTGTGCTTTTGTCTGCAGAAACGA
AGGCTTCTCTGGTGGCAAATGCCGTGGAGTCCGTCGCCGCTGCTTTTGCT
CAAAGCTTTGCTAATTTCCCATTGTCGGTCTTGCTTGTGTGCTCTCTTTT
GCCACTTGTTCCTCAATAATGCATGGCTGGCTACTCTTCGTGCAAGTTTT
AAGTGCAGTGTCTTAGGGCTAGCTTAATGTTAGTTATAAATAAGGAATGC
TCTTTCGTTTTGGTTTTGCTTAATTTGTGTATCATCTGGTATTGATACTC
CAGCTGCTTGCCTAATGAAAGAGCATATCGTCTTGTAGTTTTTCTTTCGC
TTGTTTGGATGAATGAATGAGTTTGAATTAAAAAAAAAAAAAAAA
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