CV712197

Overview
NameCV712197
Unique NameCV712197
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV712197_ssr297 microsatellite CV712197_ssr297:297..308. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CV712197 vs. ExPASy Swiss-Prot
Match: EBP2_ARATH (Probable rRNA-processing protein EBP2 homolog OS=Arabidopsis thaliana GN=At3g22660 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.234e-54
Identity = 124/240 (51.67%), Postives = 147/240 (61.25%), Query Frame = -2
Query:  136 DISCPENAGWIHKLTIDIDQEQEVDVNDDLKREASFYTQALEGTRQAFEKLQSMGLPFLRPADYYAEMVKSDAHMEKVKRRLLSEQXXXXXXXXXXXXXXXXXXXXXIQVQKTKERAKQKKEEIESVKKWRKQRQQSGFAGEVDKGELDLAFEGGKSFER-SNKKRPGVSPXXXXXXXXXXXXXXXXXXXXXXXXXDFRNXXXXXXXXXXXXKQNTSDTTDDLR-GFSKGDGAGNKRRKR 849
            DIS PE+  W HKLT++IDQ   VDVNDDL RE +FYTQALEGTR+AF KL  MG+ FLRPA+YYAEMVKSD HMEKVK RLL E+                     +Q QK KERAK+KK+ IESVKKWRKQRQQSGF+ +  + ELD  FE GKSF+R   KKRPGVSP                         +FR+            KQNT++TT+D + GF  G  +GNKR+KR
Sbjct:   62 DISWPEDVDWTHKLTVEIDQGGAVDVNDDLARETAFYTQALEGTREAFGKLNEMGVNFLRPANYYAEMVKSDVHMEKVKSRLLHEKKQIEESEERRKARDNKRMAKEVQSQKMKERAKEKKDNIESVKKWRKQRQQSGFSDKAGEPELD--FESGKSFQRGGGKKRPGVSP------GDRSGGKGRPTSRMGNKKREFRDSKFGHGGRKGLSKQNTAETTNDFKGGFRGGKASGNKRQKR 293          
BLAST of CV712197 vs. ExPASy Swiss-Prot
Match: EBP2_SCHPO (Probable rRNA-processing protein ebp2 OS=Schizosaccharomyces pombe GN=ebp2 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.565e-15
Identity = 57/175 (32.57%), Postives = 81/175 (46.29%), Query Frame = -2
Query:  340 DISCPENAGWIHKLTIDIDQEQEVDVNDDLKREASFYTQALEGTRQAFEKLQSMGLPFLRPADYYAEMVKSDAHMEKVKRRLLSEQXXXXXXXXXXXXXXXXXXXXXIQVQKTKERAKQKKEEIESVKKWRKQRQQSGFAGEVDKGELDLAFEGG-----KSFERSNKKRPGVSP 849
            DIS  EN     K  I I+     +V DDL RE +FY Q +   + AF KL+   +   RP DY+AEM+KSD HMEKV++ L+ E                      +Q+ K +ER ++KKE +E +   +++        E D    D+A         K   RS K RP  +P
Sbjct:  112 DISFVENQAVTTKEPIIIE-----NVEDDLARELAFYKQGVSSVKAAFAKLREANVLISRPHDYFAEMLKSDDHMEKVRQELIKEATAKKLSQQAKKQRELKKFGKQVQLAKQEERQREKKETLEKINLLKRKHTGGDLTTEDD---FDIALSSASADTFKKGSRSTKSRPQPNP 278          
BLAST of CV712197 vs. ExPASy Swiss-Prot
Match: EBP2_YEAST (rRNA-processing protein EBP2 OS=Saccharomyces cerevisiae GN=EBP2 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.947e-15
Identity = 48/146 (32.88%), Postives = 78/146 (53.42%), Query Frame = -2
Query:  355 DVNDDLKREASFYTQALEGTRQAFEKLQSMGLPFLRPADYYAEMVKSDAHMEKVKRRLLSEQXXXXXXXXXXXXXXXXXXXXXIQVQKTKERAKQKKEEIESVKKWRKQRQQSGFAGEVDKGELDLAFE---GGKSFERS--NKKR 777
            D+ DD +RE +FY Q+L+    A ++L+ + +PF RP DY+AEMVKSD HM+K+K +L+ E                      +Q    ++R  +K+E +E +K  + +R+ +    E+D  E ++  E    GK F+R   N KR
Sbjct:  235 DIYDDTERELAFYKQSLDAVLVARDELKRLKVPFKRPLDYFAEMVKSDEHMDKIKGKLIEEASDKKAREEARRQRQLKKFGKQVQNATLQKRQLEKRETLEKIKSLKNKRKHN----EIDHSEFNVGVEEEVEGKRFDRGRPNGKR 376          
BLAST of CV712197 vs. ExPASy Swiss-Prot
Match: EBP2_CAEEL (Probable rRNA-processing protein EBP2 homolog OS=Caenorhabditis elegans GN=C18A3.3 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 8.588e-14
Identity = 45/130 (34.62%), Postives = 68/130 (52.31%), Query Frame = -2
Query:  442 WIHKLTIDIDQEQEVDV---NDDLKREASFYTQALEGTRQAFEKLQSMGLPFLRPADYYAEMVKSDAHMEKVKRRLLSEQXXXXXXXXXXXXXXXXXXXXXIQVQKTKERAKQKKEEIESVKKWRKQRQQ 822
            W+  L + +    E+D    NDD +RE +FY QA +  + A+ +L ++G+  LRP DYYAEM KSD HM+KV++RLL  Q                     +Q +    +  +KK   E+VKK +K  +Q
Sbjct:  105 WVETLEV-VTPHSEMDKKVENDDFQRELNFYKQAEKAVQIAYPRLLNLGIKVLRPTDYYAEMAKSDTHMQKVRKRLLGIQEMKERQEAFRRIREEKKFAVKVQKEVLAAKNTEKKNLAEAVKKHKKGMKQ 233          
BLAST of CV712197 vs. ExPASy Swiss-Prot
Match: EBP2_MOUSE (Probable rRNA-processing protein EBP2 OS=Mus musculus GN=Ebna1bp2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.050e-11
Identity = 44/145 (30.34%), Postives = 73/145 (50.34%), Query Frame = -2
Query:  361 DQEQEVDVNDDLKREASFYTQALEGTRQAFEKLQSMGLPFLRPADYYAEMVKSDAHMEKVKRRLLSEQXXXXXXXXXXXXXXXXXXXXXIQVQKTKERAKQKKEEIESVKKWRKQRQQSGFAGEVDKGELDLAFEGGKSFERSNK 795
            DQ++ V+  DD +RE SFY QA         +L  + +P  RP DY+AEM KSD  M+K++++L ++Q                     +Q +  ++R ++K   + ++KK++K     GF+ ++D  E D      K  ERS K
Sbjct:   91 DQKKGVNPEDDFQREMSFYRQAQAAVLAVLPRLHQLQVPTKRPTDYFAEMAKSDQQMQKIRQKLQTKQAAMEKSEKAKQLRALRKYGKKVQTEVLQKRQREKAHMMNAIKKYQK-----GFSDKLDFLEGD-----QKPVERSAK 225          
BLAST of CV712197 vs. ExPASy Swiss-Prot
Match: EBP2_HUMAN (Probable rRNA-processing protein EBP2 OS=Homo sapiens GN=EBNA1BP2 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.210e-11
Identity = 41/151 (27.15%), Postives = 75/151 (49.67%), Query Frame = -2
Query:  343 EQEVDVNDDLKREASFYTQALEGTRQAFEKLQSMGLPFLRPADYYAEMVKSDAHMEKVKRRLLSEQXXXXXXXXXXXXXXXXXXXXXIQVQKTKERAKQKKEEIESVKKWRKQRQQSGFAGEVD--KGELDLAFEGGKSFERSNKKRPGVS 789
            ++ VD  DD +RE SFY QA         +L  + +P  RP DY+AEM KSD  M+K++++L ++Q                     +Q +  ++R ++K   + ++KK++K     GF+ ++D  +G+     +  K+  +  + R G S
Sbjct:   93 QKAVDPEDDFQREMSFYRQAQAAVLAVLPRLHQLKVPTKRPTDYFAEMAKSDLQMQKIRQKLQTKQAAMERSEKAKQLRALRKYGKKVQTEVLQKRQQEKAHMMNAIKKYQK-----GFSDKLDFLEGDQKPLAQRKKAGAKGQQMRKGPS 238          
The following BLAST results are available for this feature:
BLAST of CV712197 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
EBP2_ARATH2.234e-5451.67Probable rRNA-processing protein EBP2 homolog OS=A... [more]
EBP2_SCHPO1.565e-1532.57Probable rRNA-processing protein ebp2 OS=Schizosac... [more]
EBP2_YEAST5.947e-1532.88rRNA-processing protein EBP2 OS=Saccharomyces cere... [more]
EBP2_CAEEL8.588e-1434.62Probable rRNA-processing protein EBP2 homolog OS=C... [more]
EBP2_MOUSE1.050e-1130.34Probable rRNA-processing protein EBP2 OS=Mus muscu... [more]
EBP2_HUMAN5.210e-1127.15Probable rRNA-processing protein EBP2 OS=Homo sapi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A22_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712197 ID=CV712197; Name=CV712197; organism=Citrus sinensis; type=EST; length=850bp
TCAAACAGAATAACATTAAGCAACTAGCAATTTTCCTTTAAGGACAAACA
CTGCAAGTATCTAGCACATAAAAGATTACATAGACCAAAAGAACCAAAAT
TTCCCAACAGGCTACAACAAGCAGAACCCGTATTACCTCTTCCTTCTCTT
ATTTCCAGCACCATCACCTTTACTGAAGCCTCTTAAATCATCAGTGGTAT
CAGATGTGTTTTGTTTCTTCATACTTTTCTTCCCTCCAAAGCCAAACTTG
GAATTTCTAAAATCTCTATTCTTCTTCTTTTTTCCCTTTCCACTATCACC
ACCACCACTTTTTCTTGCCTTCCCACCAGACCGATCTCCTGGAGACACCC
CTGGTCTCTTCTTATTTGACCTCTCAAATGACTTCCCACCTTCAAAGGCC
AAATCCAATTCACCCTTGTCGACTTCCCCGGCAAACCCACTTTGTTGCCT
CTGCTTCCTCCACTTCTTAACAGATTCTATTTCCTCTTTTTTCTGCTTCG
CTCTCTCCTTTGTCTTTTGGACCTGAATCTCTTTAGCTAGTTTCTTAGCC
TCTCTAGCCTTCTTTCTCTCCGCAGCCTCCTCAATCTCTTTCTGCTCAGA
CAAAAGTCGGCGCTTCACCTTTTCCATGTGAGCATCCGACTTAACCATCT
CTGCATAATAATCAGCCGGTCTAAGAAAAGGCAGCCCCATCGATTGAAGC
TTCTCAAAGGCCTGCCTTGTCCCCTCTAATGCCTGTGTATAGAAAGAAGC
CTCCCTTTTCAGATCATCATTCACATCCACCTCTTGCTCTTGATCAATAT
CAATGGTAAGCTTATGTATCCACCCAGCATTTTCCGGGCAACTAATATCT
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