CX301751

Overview
NameCX301751
Unique NameCX301751
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length557
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301751 vs. ExPASy Swiss-Prot
Match: SINA2_ARATH (E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana GN=SINAT2 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.191e-24
Identity = 51/57 (89.47%), Postives = 54/57 (94.74%), Query Frame = 3
Query:    3 GRRLIWQGIPRSIRDSHRKVRDSQDGLIIQRNMALYFSGGDRTELKLRITGRIWKEE 173
            GR+L WQGIPRSIRDSHRKVRDSQDGLII RN+ALYFSGGDR ELKLR+TGRIWKEE
Sbjct:  252 GRKLTWQGIPRSIRDSHRKVRDSQDGLIIPRNLALYFSGGDRQELKLRVTGRIWKEE 308          
BLAST of CX301751 vs. ExPASy Swiss-Prot
Match: SINA3_ARATH (E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana GN=SINAT3 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.602e-23
Identity = 50/63 (79.37%), Postives = 57/63 (90.48%), Query Frame = 3
Query:    3 GRRLIWQGIPRSIRDSHRKVRDSQDGLIIQRNMALYFSGGDRTELKLRITGRIWKEE*RDIEG 191
            GR+LIW+G PRS+RDSHRKVRDS DGLIIQRNMAL+FSGGDR ELKLR+TGRIWKE+ +  EG
Sbjct:  255 GRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQQSGEG 317          
BLAST of CX301751 vs. ExPASy Swiss-Prot
Match: SINA4_ARATH (E3 ubiquitin-protein ligase SINAT4 OS=Arabidopsis thaliana GN=SINAT4 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.021e-22
Identity = 47/57 (82.46%), Postives = 53/57 (92.98%), Query Frame = 3
Query:    3 GRRLIWQGIPRSIRDSHRKVRDSQDGLIIQRNMALYFSGGDRTELKLRITGRIWKEE 173
            GR+L W+G PRSIRDSHRKVRDS DGLIIQRNMAL+FSGGDR ELKLR+TG+IWKE+
Sbjct:  256 GRKLTWEGTPRSIRDSHRKVRDSNDGLIIQRNMALFFSGGDRKELKLRVTGKIWKEQ 312          
BLAST of CX301751 vs. ExPASy Swiss-Prot
Match: SINA1_ARATH (Putative E3 ubiquitin-protein ligase SINAT1 OS=Arabidopsis thaliana GN=SINAT1 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.946e-22
Identity = 48/56 (85.71%), Postives = 52/56 (92.86%), Query Frame = 3
Query:    6 RRLIWQGIPRSIRDSHRKVRDSQDGLIIQRNMALYFSGGDRTELKLRITGRIWKEE 173
            R+L WQGIPRSIRDSHRKVRDSQDGLII RN+ALYFSG D+ ELKLR+TGRIWKEE
Sbjct:  250 RKLTWQGIPRSIRDSHRKVRDSQDGLIIPRNLALYFSGSDKEELKLRVTGRIWKEE 305          
BLAST of CX301751 vs. ExPASy Swiss-Prot
Match: SINA5_ARATH (E3 ubiquitin-protein ligase SINAT5 OS=Arabidopsis thaliana GN=SINAT5 PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 1.958e-21
Identity = 45/57 (78.95%), Postives = 52/57 (91.23%), Query Frame = 3
Query:    3 GRRLIWQGIPRSIRDSHRKVRDSQDGLIIQRNMALYFSGGDRTELKLRITGRIWKEE 173
            GR+  W+G PRS+RDSHRKVRDS DGLIIQRNMAL+FSGGD+ ELKLR+TGRIWKE+
Sbjct:  238 GRKQTWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDKKELKLRVTGRIWKEQ 294          
The following BLAST results are available for this feature:
BLAST of CX301751 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SINA2_ARATH7.191e-2489.47E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis ... [more]
SINA3_ARATH1.602e-2379.37E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis ... [more]
SINA4_ARATH3.021e-2282.46E3 ubiquitin-protein ligase SINAT4 OS=Arabidopsis ... [more]
SINA1_ARATH3.946e-2285.71Putative E3 ubiquitin-protein ligase SINAT1 OS=Ara... [more]
SINA5_ARATH1.958e-2178.95E3 ubiquitin-protein ligase SINAT5 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionC08013B11SK PhyRootSw1 Citrus sinensis cDNA clone C08013B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301751 ID=CX301751; Name=CX301751; organism=Citrus sinensis; type=EST; length=557bp
ATGGACGTAGGCTTATATGGCAAGGAATCCCAAGGAGCATCCGTGACAGC
CACAGGAAAGTTCGTGACAGCCAGGATGGGCTTATTATTCAGAGGAACAT
GGCTCTCTACTTTTCTGGTGGAGATAGGACAGAGCTGAAGTTGAGGATTA
CTGGGCGCATATGGAAAGAAGAATGAAGAGATATAGAGGGACAATTGTAC
AGTGCAGAATTTCTCTGAGACTCAACCAGCATTGCTCCAAGTATGAGGGG
TGAATCTTGCATTATGCTGATTTATTGTTTATTTTGTGCAAACAAGGTGT
CATGGTCCACGCTTGTACTTGGTTTTACTGCATACCTTTCTGTCAGCTCG
CCGCCACGTGGGGCAAGATTCTAGTTCGGGAGTTAGTGTAGGAACCGATA
AATGCATAGAATTGAGTTGTAGTCTCCAATGTATCATCTGGTTTAAGCAG
CCTTCTTGTGTTTTTTATGCATCTGGCTAAGATTGAGCCGGCAGAAACAG
AAGATCAGTTATTATTTTTCCTCCGATATTTCAGTTGCACGAGAAACTTT
TAGTGGC
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