GE213315

Overview
NameGE213315
Unique NameGE213315
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213315 vs. ExPASy Swiss-Prot
Match: E137_ARATH (Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis thaliana GN=At4g34480 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 1.256e-18
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = -1
Query:  195 LIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPAFERSFGLFKPDLSAAY 350
            LIAHLRSM GTPLMPGK VDTYIFALYDE+LKPGP+ ER+FGLFK DLS  Y
Sbjct:  290 LIAHLRSMVGTPLMPGKPVDTYIFALYDENLKPGPSSERAFGLFKTDLSMVY 341          
BLAST of GE213315 vs. ExPASy Swiss-Prot
Match: E13L_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform GL153 OS=Nicotiana tabacum GN=GGL4 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.639e-11
Identity = 29/54 (53.70%), Postives = 39/54 (72.22%), Query Frame = -1
Query:  195 RYLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPAFERSFGLFKPDLSAAY 356
            R LI H++  AGTP  PGKS++TY+FA++DE++K G   E+ FGLF PD  A Y
Sbjct:  285 RNLIDHVKRGAGTPKKPGKSIETYLFAMFDENVKKGEITEKHFGLFSPDQRAKY 338          
The following BLAST results are available for this feature:
BLAST of GE213315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
E137_ARATH1.256e-1882.69Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis ... [more]
E13L_TOBAC9.639e-1153.70Glucan endo-1,3-beta-glucosidase, acidic isoform G... [more]
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Properties
Property NameValue
Genbank description172 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.