GE213298

Overview
NameGE213298
Unique NameGE213298
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
GE213298_ssr102 microsatellite GE213298_ssr102:102..111. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1957 contig Csv1_Contig1957:1..400. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213298 vs. ExPASy Swiss-Prot
Match: SUI1_SALBA (Protein translation factor SUI1 homolog OS=Salix bakko PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 3.420e-33
Identity = 65/72 (90.28%), Postives = 70/72 (97.22%), Query Frame = 3
Query:  243 MSEFDTQIPSAFDPFAEANAEDSGAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGT 458
            MSEFD  IP+AFDPFAEANAEDSGAG+KDYVH+RVQQRNGRKSLTTVQGLKK++SYNKILKDLKKEFCCNGT
Sbjct:    1 MSEFDNAIPTAFDPFAEANAEDSGAGTKDYVHVRVQQRNGRKSLTTVQGLKKDYSYNKILKDLKKEFCCNGT 72          
BLAST of GE213298 vs. ExPASy Swiss-Prot
Match: SUI1_BRAOL (Protein translation factor SUI1 homolog OS=Brassica oleracea PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 3.782e-32
Identity = 63/72 (87.50%), Postives = 70/72 (97.22%), Query Frame = 3
Query:  243 MSEFDTQIPSAFDPFAEANAEDSGAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGT 458
            MSE D+Q+P+AFDPFA+ANAEDSGAG+K+YVHIRVQQRNGRKSLTTVQGLKKE+SY KILKDLKKEFCCNGT
Sbjct:    1 MSELDSQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNGT 72          
BLAST of GE213298 vs. ExPASy Swiss-Prot
Match: SUI11_ARATH (Protein translation factor SUI1 homolog 1 OS=Arabidopsis thaliana GN=At4g27130 PE=2 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 3.782e-32
Identity = 63/72 (87.50%), Postives = 70/72 (97.22%), Query Frame = 3
Query:  243 MSEFDTQIPSAFDPFAEANAEDSGAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGT 458
            MSE D+Q+P+AFDPFA+ANAEDSGAG+K+YVHIRVQQRNGRKSLTTVQGLKKE+SY KILKDLKKEFCCNGT
Sbjct:    1 MSELDSQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNGT 72          
BLAST of GE213298 vs. ExPASy Swiss-Prot
Match: SUI1_ORYSJ (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. japonica GN=GOS2 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 2.451e-31
Identity = 65/74 (87.84%), Postives = 69/74 (93.24%), Query Frame = 3
Query:  243 MSEFDTQIPSAFDPFAEANAEDSGA--GSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGT 458
            MS+ D QIP+AFDPFAEANA DSGA  GSKDYVH+R+QQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGT
Sbjct:    1 MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGT 74          
BLAST of GE213298 vs. ExPASy Swiss-Prot
Match: SUI1_ORYSI (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. indica GN=GOS2 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 2.451e-31
Identity = 65/74 (87.84%), Postives = 69/74 (93.24%), Query Frame = 3
Query:  243 MSEFDTQIPSAFDPFAEANAEDSGA--GSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGT 458
            MS+ D QIP+AFDPFAEANA DSGA  GSKDYVH+R+QQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGT
Sbjct:    1 MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGT 74          
BLAST of GE213298 vs. ExPASy Swiss-Prot
Match: SUI12_ARATH (Protein translation factor SUI1 homolog 2 OS=Arabidopsis thaliana GN=At1g54290 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 2.451e-31
Identity = 61/72 (84.72%), Postives = 70/72 (97.22%), Query Frame = 3
Query:  243 MSEFDTQIPSAFDPFAEANAEDSGAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGT 458
            MS+ + Q+P+AFDPFA+ANAEDSGAG+K+YVHIRVQQRNGRKSLTTVQGLKKE+SY+KILKDLKKEFCCNGT
Sbjct:    1 MSDLEVQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYSKILKDLKKEFCCNGT 72          
BLAST of GE213298 vs. ExPASy Swiss-Prot
Match: SUI1_SPOST (Protein translation factor SUI1 homolog OS=Sporobolus stapfianus PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 5.461e-31
Identity = 64/74 (86.49%), Postives = 69/74 (93.24%), Query Frame = 3
Query:  243 MSEFDTQIPSAFDPFAEANAEDSGA--GSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGT 458
            MS+ D QIP+AFDPF+EANA DSGA  GSKDYVH+R+QQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGT
Sbjct:    1 MSDLDIQIPTAFDPFSEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGT 74          
BLAST of GE213298 vs. ExPASy Swiss-Prot
Match: SUI1_MAIZE (Protein translation factor SUI1 homolog OS=Zea mays GN=TIF PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 9.315e-31
Identity = 64/74 (86.49%), Postives = 69/74 (93.24%), Query Frame = 3
Query:  243 MSEFDTQIPSAFDPFAEANAEDSGA--GSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGT 458
            MS+ D QIP+AFDPFAEANA DSGA  GSKDYVH+R+QQRNGRKSLTTVQGLKKEFSY+KILKDLKKEFCCNGT
Sbjct:    1 MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYSKILKDLKKEFCCNGT 74          
BLAST of GE213298 vs. ExPASy Swiss-Prot
Match: SUI1_PIMBR (Protein translation factor SUI1 homolog OS=Pimpinella brachycarpa PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.303e-24
Identity = 52/72 (72.22%), Postives = 60/72 (83.33%), Query Frame = 3
Query:  243 MSEFDTQIPSAFDPFAEANAEDSGAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGT 458
            M + D QIP++FDPFAEA   D+   +K+YVHIR+QQRNGRKSLTTVQGLKKE SY+KILKDLKK  CCNGT
Sbjct:    1 MVDSDIQIPTSFDPFAEAEITDATGSTKEYVHIRIQQRNGRKSLTTVQGLKKELSYDKILKDLKKALCCNGT 72          
BLAST of GE213298 vs. ExPASy Swiss-Prot
Match: EIF1_PONAB (Eukaryotic translation initiation factor 1 OS=Pongo abelii GN=EIF1 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.201e-15
Identity = 36/64 (56.25%), Postives = 50/64 (78.12%), Query Frame = 3
Query:  273 AFDPFAEANAEDS--GAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGT 458
            +FDPFA+A+  D    AG++DY+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGT
Sbjct:    9 SFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGT 72          
The following BLAST results are available for this feature:
BLAST of GE213298 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
SUI1_SALBA3.420e-3390.28Protein translation factor SUI1 homolog OS=Salix b... [more]
SUI1_BRAOL3.782e-3287.50Protein translation factor SUI1 homolog OS=Brassic... [more]
SUI11_ARATH3.782e-3287.50Protein translation factor SUI1 homolog 1 OS=Arabi... [more]
SUI1_ORYSJ2.451e-3187.84Protein translation factor SUI1 homolog OS=Oryza s... [more]
SUI1_ORYSI2.451e-3187.84Protein translation factor SUI1 homolog OS=Oryza s... [more]
SUI12_ARATH2.451e-3184.72Protein translation factor SUI1 homolog 2 OS=Arabi... [more]
SUI1_SPOST5.461e-3186.49Protein translation factor SUI1 homolog OS=Sporobo... [more]
SUI1_MAIZE9.315e-3186.49Protein translation factor SUI1 homolog OS=Zea may... [more]
SUI1_PIMBR1.303e-2472.22Protein translation factor SUI1 homolog OS=Pimpine... [more]
EIF1_PONAB4.201e-1556.25Eukaryotic translation initiation factor 1 OS=Pong... [more]

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Properties
Property NameValue
Genbank description152 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.