FC871532

Overview
NameFC871532
Unique NameFC871532
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length560
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC871532_ssr239 microsatellite FC871532_ssr239:239..256. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6915 contig Csv1_Contig6915:89..648. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871532 vs. ExPASy Swiss-Prot
Match: PFD3_ARATH (Probable prefoldin subunit 3 OS=Arabidopsis thaliana GN=At5g49510 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.670e-34
Identity = 68/79 (86.08%), Postives = 76/79 (96.20%), Query Frame = 2
Query:    2 SRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRRIRQ 238
            SRA IEDTDSVCLWLGANVMLEYSC+EA+ LL+ NLENAKASLEVL+ADLQFLRDQVT+TQVT+ARVYNWDVHQRR++Q
Sbjct:  106 SRACIEDTDSVCLWLGANVMLEYSCEEASALLKNNLENAKASLEVLVADLQFLRDQVTVTQVTIARVYNWDVHQRRVKQ 184          
BLAST of FC871532 vs. ExPASy Swiss-Prot
Match: PFD3_PONAB (Prefoldin subunit 3 OS=Pongo abelii GN=VBP1 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.089e-19
Identity = 46/74 (62.16%), Postives = 54/74 (72.97%), Query Frame = 2
Query:    5 RARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQR 226
            +A +  TD VCLWLGANVMLEY  DEA  LL+KNL  A  +L+ L  DL FLRDQ T T+V +ARVYNWDV +R
Sbjct:  114 KASVPPTDKVCLWLGANVMLEYDIDEAQALLEKNLSTATKNLDSLEEDLDFLRDQFTTTEVNMARVYNWDVKRR 187          
BLAST of FC871532 vs. ExPASy Swiss-Prot
Match: PFD3_MOUSE (Prefoldin subunit 3 OS=Mus musculus GN=Vbp1 PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.089e-19
Identity = 46/74 (62.16%), Postives = 54/74 (72.97%), Query Frame = 2
Query:    5 RARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQR 226
            +A +  TD VCLWLGANVMLEY  DEA  LL+KNL  A  +L+ L  DL FLRDQ T T+V +ARVYNWDV +R
Sbjct:  113 KASVPPTDKVCLWLGANVMLEYDIDEAQALLEKNLSTATKNLDSLEEDLDFLRDQFTTTEVNMARVYNWDVKRR 186          
BLAST of FC871532 vs. ExPASy Swiss-Prot
Match: PFD3_HUMAN (Prefoldin subunit 3 OS=Homo sapiens GN=VBP1 PE=1 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 2.426e-19
Identity = 45/74 (60.81%), Postives = 54/74 (72.97%), Query Frame = 2
Query:    5 RARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQR 226
            +A +  TD +CLWLGANVMLEY  DEA  LL+KNL  A  +L+ L  DL FLRDQ T T+V +ARVYNWDV +R
Sbjct:  114 KASVPPTDKMCLWLGANVMLEYDIDEAQALLEKNLSTATKNLDSLEEDLDFLRDQFTTTEVNMARVYNWDVKRR 187          
BLAST of FC871532 vs. ExPASy Swiss-Prot
Match: PFD3_BOVIN (Prefoldin subunit 3 OS=Bos taurus GN=VBP1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.426e-19
Identity = 46/74 (62.16%), Postives = 54/74 (72.97%), Query Frame = 2
Query:    5 RARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQR 226
            +A +  TD VCLWLGANVMLEY  DEA  LL+KNL  A  +L+ L  DL FLRDQ T T+V +ARVYNWDV +R
Sbjct:  114 KASVPPTDKVCLWLGANVMLEYDIDEAQALLEKNLLTATKNLDSLEEDLDFLRDQFTTTEVNMARVYNWDVKRR 187          
BLAST of FC871532 vs. ExPASy Swiss-Prot
Match: PFD3_DICDI (Probable prefoldin subunit 3 OS=Dictyostelium discoideum GN=pfdn3 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.055e-14
Identity = 38/76 (50.00%), Postives = 53/76 (69.74%), Query Frame = 2
Query:    2 SRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRR 229
            S A++ +  S+ LWLGANVMLEYS +EA  +L+KN +     L   I DL F++DQ+T T V V+RVYN+D+ Q+R
Sbjct:  107 SSAQVNEPKSIYLWLGANVMLEYSFEEAREVLRKNKDTVDRQLSESIQDLGFVKDQITTTDVNVSRVYNYDIIQKR 182          
BLAST of FC871532 vs. ExPASy Swiss-Prot
Match: PFD3_DROME (Probable prefoldin subunit 3 OS=Drosophila melanogaster GN=CG6719 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 5.234e-14
Identity = 37/72 (51.39%), Postives = 51/72 (70.83%), Query Frame = 2
Query:   14 IEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRR 229
            +  T +V LWLGA+VMLEY  DEA  LL +N+ +A  +L+ +  D  FLRDQ+T T+V +ARVYNW V +R+
Sbjct:  103 VPPTKTVYLWLGASVMLEYPLDEAEALLNQNITSAVGNLKSVEHDQDFLRDQITTTEVNMARVYNWGVKKRQ 174          
BLAST of FC871532 vs. ExPASy Swiss-Prot
Match: PFD3_SCHPO (Probable prefoldin subunit 3 OS=Schizosaccharomyces pombe GN=SPAC3H8.07c PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.523e-13
Identity = 38/76 (50.00%), Postives = 53/76 (69.74%), Query Frame = 2
Query:    2 SRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRR 229
            ++A +E  D+V LWLGANVMLEY+ +EA  LL + L +A+ +L+    DL+FLR QVT  +V  ARVYN+ V  R+
Sbjct:   90 AKAEVEAKDNVYLWLGANVMLEYTVEEAEALLTQKLNSAEETLKACKEDLEFLRAQVTTMEVNTARVYNYTVLLRK 165          
BLAST of FC871532 vs. ExPASy Swiss-Prot
Match: PFD3_YEAST (Prefoldin subunit 3 OS=Saccharomyces cerevisiae GN=PAC10 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.787e-13
Identity = 35/66 (53.03%), Postives = 48/66 (72.73%), Query Frame = 2
Query:   32 VCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVTVARVYNWDVHQRR 229
            V LWLGA+VMLEY  DEA  LL+K L +++ SL V   D++FLR+ +T  +V  AR+YNWDV +R+
Sbjct:  120 VGLWLGADVMLEYPIDEAIELLKKKLADSEQSLTVSTEDVEFLRENITTMEVNCARLYNWDVQRRQ 185          
The following BLAST results are available for this feature:
BLAST of FC871532 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PFD3_ARATH2.670e-3486.08Probable prefoldin subunit 3 OS=Arabidopsis thalia... [more]
PFD3_PONAB1.089e-1962.16Prefoldin subunit 3 OS=Pongo abelii GN=VBP1 PE=2 S... [more]
PFD3_MOUSE1.089e-1962.16Prefoldin subunit 3 OS=Mus musculus GN=Vbp1 PE=2 S... [more]
PFD3_HUMAN2.426e-1960.81Prefoldin subunit 3 OS=Homo sapiens GN=VBP1 PE=1 S... [more]
PFD3_BOVIN2.426e-1962.16Prefoldin subunit 3 OS=Bos taurus GN=VBP1 PE=2 SV=... [more]
PFD3_DICDI1.055e-1450.00Probable prefoldin subunit 3 OS=Dictyostelium disc... [more]
PFD3_DROME5.234e-1451.39Probable prefoldin subunit 3 OS=Drosophila melanog... [more]
PFD3_SCHPO1.523e-1350.00Probable prefoldin subunit 3 OS=Schizosaccharomyce... [more]
PFD3_YEAST5.787e-1353.03Prefoldin subunit 3 OS=Saccharomyces cerevisiae GN... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK2DF05FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2DF05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871532 ID=FC871532; Name=FC871532; organism=Citrus sinensis; type=EST; length=560bp
TTCGCGGGCTCGCATTGAGGATACAGATTCAGTGTGTTTATGGCTGGGAG
CAAATGTCATGTTAGAGTATTCATGTGACGAGGCTACTGTTCTTTTGCAG
AAGAATTTAGAGAATGCTAAAGCAAGTTTAGAAGTACTTATTGCCGATTT
GCAATTCTTGAGGGATCAAGTTACTATAACTCAGGTTACCGTTGCTCGTG
TTTATAATTGGGATGTTCATCAGCGGAGAATTCGACAGGCTGCTGCTGCT
GCTGCTAATGAGTCATGAAATGAACCTTATCTTATAATTTCACTTGGATG
CAGAGGTGGGGCAGAATATGCACCTAACCTCTCTTGTTTCTTCGTTTACG
CCAATGGATTGTCCTTGTATTATCCCGTGACTTAAATTAGATATTATTGT
TTCTCTCCACATCTACACTTCCAATCCCCCATCATGGTTCAATGATGGAC
CAGTTTTGATTCATGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAA
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