FC871522

Overview
NameFC871522
Unique NameFC871522
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5197 contig Csv1_Contig5197:138..993. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871522 vs. ExPASy Swiss-Prot
Match: RD23D_ARATH (Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2)

HSP 1 Score: 264.618 bits (675), Expect = 4.496e-80
Identity = 133/179 (74.30%), Postives = 147/179 (82.12%), Query Frame = 1
Query:  199 VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQG 735
            VYG AASNLVAG  LE  +QQILDMGGG+WDRDTVVRALRAA+NNPERAVEYLYSGIP QAE+ PVA+AP  G+ A +              + GPNANPL+LFPQG+P   +G AGAG+LDFLRNS QFQ LRAMVQANPQ+LQPMLQELGKQNPQLVRLIQEHQADFLRLINEPV+G
Sbjct:  134 VYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANPLAQPQQAAAPAAATGGPNANPLNLFPQGMPAADAG-AGAGNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVEG 311          

HSP 2 Score: 55.0694 bits (131), Expect = 4.496e-80
Identity = 26/37 (70.27%), Postives = 30/37 (81.08%), Query Frame = 3
Query:  735 NLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAXV 845
            N+ +QL   MPQ++ VTPEEREAIERLE MGFDRA V
Sbjct:  314 NVMEQLEAAMPQAVTVTPEEREAIERLEGMGFDRAMV 350          
BLAST of FC871522 vs. ExPASy Swiss-Prot
Match: RD23C_ARATH (Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana GN=RAD23-3 PE=2 SV=2)

HSP 1 Score: 261.536 bits (667), Expect = 6.994e-78
Identity = 137/180 (76.11%), Postives = 149/180 (82.78%), Query Frame = 1
Query:  199 VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGN-GQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQG 735
            VYG AASNL AG+NLE  IQQILDMGGGTWDR+TVV ALRAA+NNPERAVEYLY+GIPEQAEV PVAR P + GQ AN               +SGPNANPLDLFPQGLP+VG G  GAG+LDFLRNS QFQ LRAMVQANPQ+LQPMLQELGKQNP L+RLIQ+HQADFLRLINEPV+G
Sbjct:  173 VYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIPEQAEVPPVARPPASAGQPAN---PPAQTQQPAAAPASGPNANPLDLFPQGLPNVG-GNPGAGTLDFLRNSQQFQALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINEPVEG 348          

HSP 2 Score: 50.8322 bits (120), Expect = 6.994e-78
Identity = 27/37 (72.97%), Postives = 30/37 (81.08%), Query Frame = 3
Query:  738 LGDQLAGL-MPQSIQVTPEEREAIERLEAMGFDRAXV 845
            LG   AG+  PQ+IQVT EEREAIERLEAMGF+RA V
Sbjct:  356 LGQMAAGMPQPQAIQVTHEEREAIERLEAMGFERALV 392          
BLAST of FC871522 vs. ExPASy Swiss-Prot
Match: RAD23_ORYSJ (Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2)

HSP 1 Score: 215.698 bits (548), Expect = 1.668e-64
Identity = 110/180 (61.11%), Postives = 134/180 (74.44%), Query Frame = 1
Query:  202 YGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAE--VQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQG 735
            YG A SNLVAG+NLE  IQ IL+MGGG WDRD V+ AL AA+NNPERAVEYLYSG+PEQ +  V P +  P N   A+               SSGPNA+PLDLFPQ LP+  + AAG G+LD LRN+ QF+ L ++VQANPQ+LQP+LQELGKQNPQ+++LIQE+QA+FL LINEP +G
Sbjct:  145 YGQATSNLVAGSNLEATIQSILEMGGGIWDRDIVLHALSAAFNNPERAVEYLYSGVPEQMDIPVPPPSIQPANPTQASQATQPAAPSIL----SSGPNASPLDLFPQALPNASTDAAGLGNLDALRNNAQFRTLLSLVQANPQILQPLLQELGKQNPQILQLIQENQAEFLHLINEPAEG 320          

HSP 2 Score: 51.9878 bits (123), Expect = 1.668e-64
Identity = 27/37 (72.97%), Postives = 28/37 (75.68%), Query Frame = 3
Query:  735 NLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAXV 845
            NL DQ    MPQ+I VTPEE EAI RLEAMGFDRA V
Sbjct:  325 NLLDQFPEAMPQTIAVTPEENEAILRLEAMGFDRALV 361          
BLAST of FC871522 vs. ExPASy Swiss-Prot
Match: RD23A_ARATH (Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3)

HSP 1 Score: 206.838 bits (525), Expect = 1.218e-52
Identity = 107/181 (59.12%), Postives = 136/181 (75.14%), Query Frame = 1
Query:  202 YGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQ---PVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQG 735
            YG AAS LV+G++LE  +QQI++MGGG+WD++TV RALRAAYNNPERAV+YLYSGIP+ AEV    P A+  G+G A  +              S GPN++PLDLFPQ      +G+   G+L+FLRN+ QFQ LR MV +NPQ+LQPMLQELGKQNPQL+RLIQE+QA+FL+L+NEP +G
Sbjct:  135 YGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAAPVAPA------------SGGPNSSPLDLFPQETV-AAAGSGDLGTLEFLRNNDQFQQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEG 302          
BLAST of FC871522 vs. ExPASy Swiss-Prot
Match: RD23B_ARATH (Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana GN=RAD23-2 PE=2 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 4.334e-50
Identity = 104/180 (57.78%), Postives = 131/180 (72.78%), Query Frame = 1
Query:  202 YGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGA--GSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQG 735
            YG AAS LV+G+++E  +QQI++MGGG+WD++TV RALRAAYNNPERAV+YLYSGIPE   + P     G G                   S GPN++PLDLFPQ   +  S AAG   G+L+FLR + QFQ LR+MV +NPQ+LQPMLQELGKQNPQL+RLIQE+QA+FL+L+NEP +G
Sbjct:  133 YGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPETVTI-PATNLSGVGSGRE---------LTAPPPSGGPNSSPLDLFPQ---EAVSDAAGGDLGTLEFLRGNDQFQQLRSMVNSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLLNEPYEG 299          
BLAST of FC871522 vs. ExPASy Swiss-Prot
Match: RD23B_HUMAN (UV excision repair protein RAD23 homolog B OS=Homo sapiens GN=RAD23B PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 3.808e-31
Identity = 67/182 (36.81%), Postives = 103/182 (56.59%), Query Frame = 1
Query:  199 VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGIWG 744
            ++  A S LV G + E  + +I+ MG   ++R+ V+ ALRA++NNP+RAVEYL  GIP   E Q V   P   QAA++              ++                  + ++G   L+FLRN PQFQ +R ++Q NP LL  +LQ++G++NPQL++ I +HQ  F++++NEPVQ   G
Sbjct:  176 LFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPP---QAASTGAPQSSAVAAAAATTTATTT--------------TTSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGG 337          

HSP 2 Score: 36.1946 bits (82), Expect = 3.808e-31
Identity = 16/24 (66.67%), Postives = 20/24 (83.33%), Query Frame = 3
Query:  774 IQVTPEEREAIERLEAMGFDRAXV 845
            IQVTP+E+EAIERL+A+GF    V
Sbjct:  360 IQVTPQEKEAIERLKALGFPEGLV 383          
BLAST of FC871522 vs. ExPASy Swiss-Prot
Match: RD23B_BOVIN (UV excision repair protein RAD23 homolog B OS=Bos taurus GN=RAD23B PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 6.457e-31
Identity = 67/182 (36.81%), Postives = 103/182 (56.59%), Query Frame = 1
Query:  199 VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGIWG 744
            ++  A S LV G + E  + +I+ MG   ++R+ V+ ALRA++NNP+RAVEYL  GIP   E Q V   P    AA++                 P ++             + ++G   L+FLRN PQFQ +R ++Q NP LL  +LQ++G++NPQL++ I +HQ  F++++NEPVQ   G
Sbjct:  176 LFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPP---PAAST---------------GAPQSSVAAAAATTTATTTTTSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGG 336          

HSP 2 Score: 36.1946 bits (82), Expect = 6.457e-31
Identity = 16/24 (66.67%), Postives = 20/24 (83.33%), Query Frame = 3
Query:  774 IQVTPEEREAIERLEAMGFDRAXV 845
            IQVTP+E+EAIERL+A+GF    V
Sbjct:  359 IQVTPQEKEAIERLKALGFPEGLV 382          
BLAST of FC871522 vs. ExPASy Swiss-Prot
Match: RD23B_MOUSE (UV excision repair protein RAD23 homolog B OS=Mus musculus GN=Rad23b PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 8.405e-31
Identity = 65/182 (35.71%), Postives = 100/182 (54.95%), Query Frame = 1
Query:  199 VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGIWG 744
            ++  A S LV G + E  + +I+ MG   ++R+ V+ ALRA++NNP+RAVEYL  GIP   E Q V   P    +  +                 P +  +           +  +G   L+FLRN PQFQ +R ++Q NP LL  +LQ++G++NPQL++ I +HQ  F++++NEPVQ   G
Sbjct:  176 LFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPPQAVSTGT-----------------PQSPAVAAAAATTTATTTTTSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGG 337          

HSP 2 Score: 36.1946 bits (82), Expect = 8.405e-31
Identity = 16/24 (66.67%), Postives = 20/24 (83.33%), Query Frame = 3
Query:  774 IQVTPEEREAIERLEAMGFDRAXV 845
            IQVTP+E+EAIERL+A+GF    V
Sbjct:  367 IQVTPQEKEAIERLKALGFPEGLV 390          
BLAST of FC871522 vs. ExPASy Swiss-Prot
Match: RD23B_RAT (UV excision repair protein RAD23 homolog B OS=Rattus norvegicus GN=Rad23b PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 8.406e-31
Identity = 65/182 (35.71%), Postives = 100/182 (54.95%), Query Frame = 1
Query:  199 VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGIWG 744
            ++  A S LV G + E  + +I+ MG   ++R+ V+ ALRA++NNP+RAVEYL  GIP   E Q V   P    +  +                 P +  +           +  +G   L+FLRN PQFQ +R ++Q NP LL  +LQ++G++NPQL++ I +HQ  F++++NEPVQ   G
Sbjct:  176 LFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPPQAVSTGT-----------------PQSPAVAAAAATTTATTTTTSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGG 337          

HSP 2 Score: 36.1946 bits (82), Expect = 8.406e-31
Identity = 16/24 (66.67%), Postives = 20/24 (83.33%), Query Frame = 3
Query:  774 IQVTPEEREAIERLEAMGFDRAXV 845
            IQVTP+E+EAIERL+A+GF    V
Sbjct:  366 IQVTPQEKEAIERLKALGFPEGLV 389          
BLAST of FC871522 vs. ExPASy Swiss-Prot
Match: RD23A_MOUSE (UV excision repair protein RAD23 homolog A OS=Mus musculus GN=Rad23a PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 3.392e-29
Identity = 67/172 (38.95%), Postives = 93/172 (54.07%), Query Frame = 1
Query:  211 AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEP 726
            AAS LV G+  E  + +I+ MG   ++R+ VV ALRA+YNNP RAVEYL +GIP   E       P +G    S                           Q      + AAG   L+FLR+ PQFQ +R ++Q NP LL  +LQ+LG++NPQL++ I  HQ  F++++NEP
Sbjct:  153 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQES---------------------------QRAEQPATEAAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 287          

HSP 2 Score: 36.5798 bits (83), Expect = 3.392e-29
Identity = 16/24 (66.67%), Postives = 21/24 (87.50%), Query Frame = 3
Query:  774 IQVTPEEREAIERLEAMGFDRAXV 845
            IQVTP+E+EAIERL+A+GF  + V
Sbjct:  314 IQVTPQEKEAIERLKALGFPESLV 337          
The following BLAST results are available for this feature:
BLAST of FC871522 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RD23D_ARATH4.496e-8074.30Putative DNA repair protein RAD23-4 OS=Arabidopsis... [more]
RD23C_ARATH6.994e-7876.11Putative DNA repair protein RAD23-3 OS=Arabidopsis... [more]
RAD23_ORYSJ1.668e-6461.11Probable DNA repair protein RAD23 OS=Oryza sativa ... [more]
RD23A_ARATH1.218e-5259.12Putative DNA repair protein RAD23-1 OS=Arabidopsis... [more]
RD23B_ARATH4.334e-5057.78Putative DNA repair protein RAD23-2 OS=Arabidopsis... [more]
RD23B_HUMAN3.808e-3136.81UV excision repair protein RAD23 homolog B OS=Homo... [more]
RD23B_BOVIN6.457e-3136.81UV excision repair protein RAD23 homolog B OS=Bos ... [more]
RD23B_MOUSE8.405e-3135.71UV excision repair protein RAD23 homolog B OS=Mus ... [more]
RD23B_RAT8.406e-3135.71UV excision repair protein RAD23 homolog B OS=Ratt... [more]
RD23A_MOUSE3.392e-2938.95UV excision repair protein RAD23 homolog A OS=Mus ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1AH03FM2 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK1AH03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871522 ID=FC871522; Name=FC871522; organism=Citrus sinensis; type=EST; length=846bp
GGTGAAGGTTCAACTAGGTCAACTGCGCCTACAAAGGCTCCCCAGTCAAG
TGCCCCAACCCCTGCAGCAACCCCAGCAACAGCTCCTCAGACTGCCGTGC
CAATCTCTACAGAGCCTACACCTGCTCCTGCACCTGCTCCTACTCCTGCT
CCTGCTTCTGCTTCTGTGTCATCAGTTTCTGCTACGTCAGAGTCTGGTGT
GTATGGGCATGCTGCATCTAATCTGGTTGCTGGGAACAACTTGGAGGGAG
CAATCCAGCAGATTCTTGATATGGGTGGAGGGACTTGGGATAGAGATACT
GTTGTTCGTGCTCTTCGAGCTGCTTATAATAATCCTGAGAGGGCTGTTGA
ATATTTATATTCTGGTATACCTGAGCAAGCTGAAGTTCAACCTGTGGCCC
GCGCCCCTGGTAATGGACAAGCTGCTAACTCTCCAACTCAGATGCCACAG
CCAACCCAACCGGCACCCGTTACTTCTAGTGGGCCAAATGCAAATCCTTT
GGACCTCTTTCCTCAGGGCCTTCCTGACGTGGGTTCAGGTGCAGCTGGCG
CTGGCAGTCTTGACTTTTTACGTAATAGTCCACAGTTTCAAGTTTTGCGA
GCTATGGTGCAGGCAAATCCTCAATTATTGCAGCCCATGCTTCAAGAGTT
GGGGAAACAAAATCCTCAGCTAGTGAGGCTTATTCAGGAACATCAGGCTG
ACTTCCTTCGGCTTATCAATGAACCTGTTCAAGGAATTTGGGGGACCAGC
TTGCTGGGTTAATGCCACAGTCAATACAAGTCACGCCCGAAGAACGTGAA
GCCATAGAACGTCTTGAGGCAATGGGCTTTGATCGAGCATTNGTAT
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