FC871522
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC871522 vs. ExPASy Swiss-Prot
Match: RD23D_ARATH (Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2) HSP 1 Score: 264.618 bits (675), Expect = 4.496e-80 Identity = 133/179 (74.30%), Postives = 147/179 (82.12%), Query Frame = 1 Query: 199 VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQG 735 VYG AASNLVAG LE +QQILDMGGG+WDRDTVVRALRAA+NNPERAVEYLYSGIP QAE+ PVA+AP G+ A + + GPNANPL+LFPQG+P +G AGAG+LDFLRNS QFQ LRAMVQANPQ+LQPMLQELGKQNPQLVRLIQEHQADFLRLINEPV+G Sbjct: 134 VYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGEQAANPLAQPQQAAAPAAATGGPNANPLNLFPQGMPAADAG-AGAGNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVEG 311 HSP 2 Score: 55.0694 bits (131), Expect = 4.496e-80 Identity = 26/37 (70.27%), Postives = 30/37 (81.08%), Query Frame = 3 Query: 735 NLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAXV 845 N+ +QL MPQ++ VTPEEREAIERLE MGFDRA V Sbjct: 314 NVMEQLEAAMPQAVTVTPEEREAIERLEGMGFDRAMV 350
BLAST of FC871522 vs. ExPASy Swiss-Prot
Match: RD23C_ARATH (Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana GN=RAD23-3 PE=2 SV=2) HSP 1 Score: 261.536 bits (667), Expect = 6.994e-78 Identity = 137/180 (76.11%), Postives = 149/180 (82.78%), Query Frame = 1 Query: 199 VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGN-GQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQG 735 VYG AASNL AG+NLE IQQILDMGGGTWDR+TVV ALRAA+NNPERAVEYLY+GIPEQAEV PVAR P + GQ AN +SGPNANPLDLFPQGLP+VG G GAG+LDFLRNS QFQ LRAMVQANPQ+LQPMLQELGKQNP L+RLIQ+HQADFLRLINEPV+G Sbjct: 173 VYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIPEQAEVPPVARPPASAGQPAN---PPAQTQQPAAAPASGPNANPLDLFPQGLPNVG-GNPGAGTLDFLRNSQQFQALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINEPVEG 348 HSP 2 Score: 50.8322 bits (120), Expect = 6.994e-78 Identity = 27/37 (72.97%), Postives = 30/37 (81.08%), Query Frame = 3 Query: 738 LGDQLAGL-MPQSIQVTPEEREAIERLEAMGFDRAXV 845 LG AG+ PQ+IQVT EEREAIERLEAMGF+RA V Sbjct: 356 LGQMAAGMPQPQAIQVTHEEREAIERLEAMGFERALV 392
BLAST of FC871522 vs. ExPASy Swiss-Prot
Match: RAD23_ORYSJ (Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2) HSP 1 Score: 215.698 bits (548), Expect = 1.668e-64 Identity = 110/180 (61.11%), Postives = 134/180 (74.44%), Query Frame = 1 Query: 202 YGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAE--VQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQG 735 YG A SNLVAG+NLE IQ IL+MGGG WDRD V+ AL AA+NNPERAVEYLYSG+PEQ + V P + P N A+ SSGPNA+PLDLFPQ LP+ + AAG G+LD LRN+ QF+ L ++VQANPQ+LQP+LQELGKQNPQ+++LIQE+QA+FL LINEP +G Sbjct: 145 YGQATSNLVAGSNLEATIQSILEMGGGIWDRDIVLHALSAAFNNPERAVEYLYSGVPEQMDIPVPPPSIQPANPTQASQATQPAAPSIL----SSGPNASPLDLFPQALPNASTDAAGLGNLDALRNNAQFRTLLSLVQANPQILQPLLQELGKQNPQILQLIQENQAEFLHLINEPAEG 320 HSP 2 Score: 51.9878 bits (123), Expect = 1.668e-64 Identity = 27/37 (72.97%), Postives = 28/37 (75.68%), Query Frame = 3 Query: 735 NLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAXV 845 NL DQ MPQ+I VTPEE EAI RLEAMGFDRA V Sbjct: 325 NLLDQFPEAMPQTIAVTPEENEAILRLEAMGFDRALV 361
BLAST of FC871522 vs. ExPASy Swiss-Prot
Match: RD23A_ARATH (Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3) HSP 1 Score: 206.838 bits (525), Expect = 1.218e-52 Identity = 107/181 (59.12%), Postives = 136/181 (75.14%), Query Frame = 1 Query: 202 YGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQ---PVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQG 735 YG AAS LV+G++LE +QQI++MGGG+WD++TV RALRAAYNNPERAV+YLYSGIP+ AEV P A+ G+G A + S GPN++PLDLFPQ +G+ G+L+FLRN+ QFQ LR MV +NPQ+LQPMLQELGKQNPQL+RLIQE+QA+FL+L+NEP +G Sbjct: 135 YGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAGSGAAPVAPA------------SGGPNSSPLDLFPQETV-AAAGSGDLGTLEFLRNNDQFQQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEG 302
BLAST of FC871522 vs. ExPASy Swiss-Prot
Match: RD23B_ARATH (Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana GN=RAD23-2 PE=2 SV=2) HSP 1 Score: 198.364 bits (503), Expect = 4.334e-50 Identity = 104/180 (57.78%), Postives = 131/180 (72.78%), Query Frame = 1 Query: 202 YGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGA--GSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQG 735 YG AAS LV+G+++E +QQI++MGGG+WD++TV RALRAAYNNPERAV+YLYSGIPE + P G G S GPN++PLDLFPQ + S AAG G+L+FLR + QFQ LR+MV +NPQ+LQPMLQELGKQNPQL+RLIQE+QA+FL+L+NEP +G Sbjct: 133 YGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPETVTI-PATNLSGVGSGRE---------LTAPPPSGGPNSSPLDLFPQ---EAVSDAAGGDLGTLEFLRGNDQFQQLRSMVNSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLLNEPYEG 299
BLAST of FC871522 vs. ExPASy Swiss-Prot
Match: RD23B_HUMAN (UV excision repair protein RAD23 homolog B OS=Homo sapiens GN=RAD23B PE=1 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 3.808e-31 Identity = 67/182 (36.81%), Postives = 103/182 (56.59%), Query Frame = 1 Query: 199 VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGIWG 744 ++ A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q V P QAA++ ++ + ++G L+FLRN PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ G Sbjct: 176 LFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPP---QAASTGAPQSSAVAAAAATTTATTT--------------TTSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGG 337 HSP 2 Score: 36.1946 bits (82), Expect = 3.808e-31 Identity = 16/24 (66.67%), Postives = 20/24 (83.33%), Query Frame = 3 Query: 774 IQVTPEEREAIERLEAMGFDRAXV 845 IQVTP+E+EAIERL+A+GF V Sbjct: 360 IQVTPQEKEAIERLKALGFPEGLV 383
BLAST of FC871522 vs. ExPASy Swiss-Prot
Match: RD23B_BOVIN (UV excision repair protein RAD23 homolog B OS=Bos taurus GN=RAD23B PE=2 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 6.457e-31 Identity = 67/182 (36.81%), Postives = 103/182 (56.59%), Query Frame = 1 Query: 199 VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGIWG 744 ++ A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q V P AA++ P ++ + ++G L+FLRN PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ G Sbjct: 176 LFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPP---PAAST---------------GAPQSSVAAAAATTTATTTTTSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGG 336 HSP 2 Score: 36.1946 bits (82), Expect = 6.457e-31 Identity = 16/24 (66.67%), Postives = 20/24 (83.33%), Query Frame = 3 Query: 774 IQVTPEEREAIERLEAMGFDRAXV 845 IQVTP+E+EAIERL+A+GF V Sbjct: 359 IQVTPQEKEAIERLKALGFPEGLV 382
BLAST of FC871522 vs. ExPASy Swiss-Prot
Match: RD23B_MOUSE (UV excision repair protein RAD23 homolog B OS=Mus musculus GN=Rad23b PE=1 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 8.405e-31 Identity = 65/182 (35.71%), Postives = 100/182 (54.95%), Query Frame = 1 Query: 199 VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGIWG 744 ++ A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q V P + + P + + + +G L+FLRN PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ G Sbjct: 176 LFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPPQAVSTGT-----------------PQSPAVAAAAATTTATTTTTSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGG 337 HSP 2 Score: 36.1946 bits (82), Expect = 8.405e-31 Identity = 16/24 (66.67%), Postives = 20/24 (83.33%), Query Frame = 3 Query: 774 IQVTPEEREAIERLEAMGFDRAXV 845 IQVTP+E+EAIERL+A+GF V Sbjct: 367 IQVTPQEKEAIERLKALGFPEGLV 390
BLAST of FC871522 vs. ExPASy Swiss-Prot
Match: RD23B_RAT (UV excision repair protein RAD23 homolog B OS=Rattus norvegicus GN=Rad23b PE=1 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 8.406e-31 Identity = 65/182 (35.71%), Postives = 100/182 (54.95%), Query Frame = 1 Query: 199 VYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGIWG 744 ++ A S LV G + E + +I+ MG ++R+ V+ ALRA++NNP+RAVEYL GIP E Q V P + + P + + + +G L+FLRN PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ G Sbjct: 176 LFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPPQAVSTGT-----------------PQSPAVAAAAATTTATTTTTSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGG 337 HSP 2 Score: 36.1946 bits (82), Expect = 8.406e-31 Identity = 16/24 (66.67%), Postives = 20/24 (83.33%), Query Frame = 3 Query: 774 IQVTPEEREAIERLEAMGFDRAXV 845 IQVTP+E+EAIERL+A+GF V Sbjct: 366 IQVTPQEKEAIERLKALGFPEGLV 389
BLAST of FC871522 vs. ExPASy Swiss-Prot
Match: RD23A_MOUSE (UV excision repair protein RAD23 homolog A OS=Mus musculus GN=Rad23a PE=1 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 3.392e-29 Identity = 67/172 (38.95%), Postives = 93/172 (54.07%), Query Frame = 1 Query: 211 AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEP 726 AAS LV G+ E + +I+ MG ++R+ VV ALRA+YNNP RAVEYL +GIP E P +G S Q + AAG L+FLR+ PQFQ +R ++Q NP LL +LQ+LG++NPQL++ I HQ F++++NEP Sbjct: 153 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQES---------------------------QRAEQPATEAAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 287 HSP 2 Score: 36.5798 bits (83), Expect = 3.392e-29 Identity = 16/24 (66.67%), Postives = 21/24 (87.50%), Query Frame = 3 Query: 774 IQVTPEEREAIERLEAMGFDRAXV 845 IQVTP+E+EAIERL+A+GF + V Sbjct: 314 IQVTPQEKEAIERLKALGFPESLV 337 The following BLAST results are available for this feature:
BLAST of FC871522 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >FC871522 ID=FC871522; Name=FC871522; organism=Citrus sinensis; type=EST; length=846bpback to top |