DY257277

Overview
NameDY257277
Unique NameDY257277
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1266
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6570 contig Csv1_Contig6570:1..1266. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY257277 vs. ExPASy Swiss-Prot
Match: UPL2_ARATH (E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis thaliana GN=UPL2 PE=1 SV=2)

HSP 1 Score: 63.1586 bits (152), Expect = 5.995e-15
Identity = 28/45 (62.22%), Postives = 37/45 (82.22%), Query Frame = 2 
Query:  356 DVKDISELTFHLNADKENHIQYEITDVTDYDLRPGGPNITVTDKT 490
            DV DI +LTF ++AD+E HI YE T+VTDY+L+PGG NI VT++T
Sbjct: 3442 DVSDILDLTFSMDADEEKHILYEKTEVTDYELKPGGRNIRVTEET 3486

HSP 2 Score: 36.5798 bits (83), Expect = 5.995e-15
Identity = 20/52 (38.46%), Postives = 27/52 (51.92%), Query Frame = 1 
Query:  499 YVEHVTDHLLTQAFRPPILTFMECFKEPLPQESKTTTQELHAERQIRDLTYI 654
            YV+ V DH+LT A RP I  F+E   E +P+E  +   +   E  I  L  I
Sbjct: 3490 YVDLVADHILTSAIRPQINAFLEGLNELIPRELVSIFNDKELELLISGLPEI 3541
[Close]
BLAST of DY257277 vs. ExPASy Swiss-Prot
Match: UPL1_ARATH (E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana GN=UPL1 PE=1 SV=3)

HSP 1 Score: 63.1586 bits (152), Expect = 7.787e-15
Identity = 28/45 (62.22%), Postives = 37/45 (82.22%), Query Frame = 2 
Query:  356 DVKDISELTFHLNADKENHIQYEITDVTDYDLRPGGPNITVTDKT 490
            DV DI +LTF ++AD+E HI YE T+VTDY+L+PGG NI VT++T
Sbjct: 3465 DVSDILDLTFSMDADEEKHILYEKTEVTDYELKPGGRNIRVTEET 3509

HSP 2 Score: 36.1946 bits (82), Expect = 7.787e-15
Identity = 20/52 (38.46%), Postives = 27/52 (51.92%), Query Frame = 1 
Query:  499 YVEHVTDHLLTQAFRPPILTFMECFKEPLPQESKTTTQELHAERQIRDLTYI 654
            YV+ V  H+LT A RP I  F+E F E +P+E  +   +   E  I  L  I
Sbjct: 3513 YVDLVAGHILTNAIRPQINAFLEGFNELIPRELVSIFNDKELELLISGLPEI 3564
The following BLAST results are available for this feature:
BLAST of DY257277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
UPL2_ARATH5.995e-1562.22E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis th... [more]
UPL1_ARATH7.787e-1562.22E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK1DC09FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257277 ID=DY257277; Name=DY257277; organism=Citrus sinensis; type=EST; length=1266bp
GTTTTGTTATAGTTGAAAGATTGCACGTTGATTTTGAGTGTGGCAATGTC
CAATTGTATATATCTCTAAATAGAAAATGACAGTCACTGCCCTCTGCCTC
AACATTGCATTTTTATATGATTTCATGTTGGGGCATGATTTCTGATTTTA
GAGATATACCTTGCTTTATCCCATTTTGTCAAGGTGCATAAATTTTTTTG
ATCGGATGGTTGACAAAAATCAAATGGCAAAACTCATCTGGCTGGTGTTT
TGTGTCCAACAAAAAAAAAAAGAAAAAAAAACCCGGTTTTCTTGCACGAC
ATTGACGTTATAAAAACGCATTGCTAATCAATTTGTAGCAGCGAACAGGT
AAATAGATGTCAAAGACATATCTGAATTGACCTTCCACCTGAATGCCGAT
AAAGAAAATCACATTCAGTATGAGATAACTGATGTTACTGATTATGACCT
TAGACCTGGAGGCCCAAACATTACAGTTACAGACAAAACAATCTTGTGTA
TGTAGAACATGTGACCGATCATCTATTGACACAGGCCTTTCGTCCTCCCA
TCCTTACCTTCATGGAATGTTTTAAAGAACCGCTTCCGCAGGAAAGTAAA
ACAACCACCCAAGAACTCCACGCTGAACGTCAAATCAGGGATCTGACCTA
CATTACGACACGGCTCAATATATATTCCCTTTTATTTTCGCCCGCGAAAG
CACTGTAGCAGGTGCGACTCACCGATGATTCCCCACCAACTCCGCTAGAA
AAGACAAACCCAACCCCCTCAATTCCCAACCGAACCAGCGCCCTCACCTA
CCCACACCATATACGAATACCTCGCGCCAACCCTGGCTTCTACCCTCTAG
ACTCCACCTGGCCAGGTCCAACCGCTCTTCCCCCCTAATAGCTTACACTA
TCCGTACACAACTCCCCACCGTCATCCCCACACGAGCTAACAATTACAAA
TACTATTTCTACACACCTAAAACAACCATAACTCCTCTACCCCCCATCAT
TCACATATCCCCACCTCCCTCCCTACCTCAAAACCTCATCACAACCGACC
CAACCATCTCCCAGCGCAATCAGACTACACTCCACCAACACCCATCCACC
CCTTCACCTCTACTCACTAACCCCCTCCACCCACAAACTCATCTACCGTC
AATACTCTGCACAAATATCCCAAAAACGAGATGGTAACGACACACCCAAA
AACGCAACAAGAACAAAATCCCCACCAACTAAACCTCCAAGACGCAGCAT
CCAAGTTCTAGCCCCA
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