DY257271

Overview
NameDY257271
Unique NameDY257271
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1221
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_CARPA (Superoxide dismutase [Cu-Zn] OS=Carica papaya GN=SODCC PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.026e-43
Identity = 68/92 (73.91%), Postives = 79/92 (85.87%), Query Frame = 2 
Query:  251 PTLTLLGKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDLPG 526
            P     GKEHG PEDDIRHAGDL NVNVGDDG  +F+++D+QIPL+GPNSI+GRAVV HADPDDLG+GGHEL+ TTGNAGGRV+CG+I L G
Sbjct:   61 PHFNPAGKEHGAPEDDIRHAGDLGNVNVGDDGKVSFSIIDSQIPLTGPNSIVGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGVIGLQG 152

HSP 2 Score: 41.9726 bits (97), Expect = 1.026e-43
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 1 
Query:  214 LGNTKNGCMSTGPHFNPARK 273
            LG+T NGCMSTGPHFNPA K
Sbjct:   49 LGDTTNGCMSTGPHFNPAGK 68

HSP 3 Score: 24.6386 bits (52), Expect = 1.026e-43
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 3 
Query:  186 GPHGFHVHAL 215
            G HGFHVHAL
Sbjct:   40 GHHGFHVHAL 49
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_SPIOL (Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea GN=SODCC PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.335e-43
Identity = 69/86 (80.23%), Postives = 79/86 (91.86%), Query Frame = 2 
Query:  269 GKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDLPG 526
            GKEHG PEDD+RHAGDL N+ VGDDGTATFT++D+QIPLSGPNSI+GRAVV HA+PDDLG+GGHEL+ TTGNAGGRV+CGII L G
Sbjct:   67 GKEHGAPEDDVRHAGDLGNITVGDDGTATFTIIDSQIPLSGPNSIVGRAVVVHAEPDDLGRGGHELSKTTGNAGGRVACGIIGLQG 152

HSP 2 Score: 38.5058 bits (88), Expect = 1.335e-43
Identity = 15/20 (75.00%), Postives = 17/20 (85.00%), Query Frame = 1 
Query:  214 LGNTKNGCMSTGPHFNPARK 273
            LG+T NGCMSTGPH+NP  K
Sbjct:   49 LGDTTNGCMSTGPHYNPNGK 68

HSP 3 Score: 24.2534 bits (51), Expect = 1.335e-43
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 3 
Query:  186 GPHGFHVHAL 215
            G HGFHVHAL
Sbjct:   40 GLHGFHVHAL 49
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC1_MESCR (Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum crystallinum GN=SODCC.1 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.936e-43
Identity = 67/92 (72.83%), Postives = 78/92 (84.78%), Query Frame = 2 
Query:  251 PTLTLLGKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDLPG 526
            P     GKEHG PED+ RHAGDL N+ VGDDGTATFT++D+QIPL+GPNSI+GRAVV HADPDDLG+GGHEL+  TGNAGGRV+CG+I L G
Sbjct:   61 PHFNPAGKEHGAPEDETRHAGDLGNITVGDDGTATFTIIDSQIPLTGPNSIVGRAVVVHADPDDLGRGGHELSKATGNAGGRVACGVIGLQG 152

HSP 2 Score: 41.9726 bits (97), Expect = 2.936e-43
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 1 
Query:  214 LGNTKNGCMSTGPHFNPARK 273
            LG+T NGCMSTGPHFNPA K
Sbjct:   49 LGDTTNGCMSTGPHFNPAGK 68

HSP 3 Score: 24.2534 bits (51), Expect = 2.936e-43
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 3 
Query:  186 GPHGFHVHAL 215
            G HGFHVHAL
Sbjct:   40 GLHGFHVHAL 49
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_PAUKA (Superoxide dismutase [Cu-Zn] OS=Paulownia kawakamii GN=SODCC PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.122e-42
Identity = 66/92 (71.74%), Postives = 76/92 (82.61%), Query Frame = 2 
Query:  251 PTLTLLGKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDLPG 526
            P     GKEHG P+D++RHAGDL NV VG+DGTA FT+VD QIPL+GP+SIIGRAVV HADPDDLG+GGHEL+ TTGN GGRV+CGI  L G
Sbjct:   61 PHFNPAGKEHGAPDDEVRHAGDLGNVTVGEDGTAAFTIVDKQIPLTGPHSIIGRAVVVHADPDDLGKGGHELSKTTGNTGGRVACGINGLQG 152

HSP 2 Score: 40.817 bits (94), Expect = 3.122e-42
Identity = 16/20 (80.00%), Postives = 18/20 (90.00%), Query Frame = 1 
Query:  214 LGNTKNGCMSTGPHFNPARK 273
            LG+T NGC+STGPHFNPA K
Sbjct:   49 LGDTTNGCLSTGPHFNPAGK 68

HSP 3 Score: 28.1054 bits (61), Expect = 3.122e-42
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 3 
Query:  186 GPHGFHVHAL 215
            GPHGFHVHAL
Sbjct:   40 GPHGFHVHAL 49
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_NICPL (Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbaginifolia GN=SODCC PE=2 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 8.927e-42
Identity = 66/86 (76.74%), Postives = 76/86 (88.37%), Query Frame = 2 
Query:  269 GKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDLPG 526
            GKEHG PED++RHAGDL N+ VG+DGTA+FT+ D QIPL+GP SIIGRAVV HADPDDLG+GGHEL+ TTGNAGGRV+CGII L G
Sbjct:   67 GKEHGAPEDEVRHAGDLGNITVGEDGTASFTLTDKQIPLAGPQSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152

HSP 2 Score: 40.817 bits (94), Expect = 8.927e-42
Identity = 16/20 (80.00%), Postives = 18/20 (90.00%), Query Frame = 1 
Query:  214 LGNTKNGCMSTGPHFNPARK 273
            LG+T NGCMSTGPH+NPA K
Sbjct:   49 LGDTTNGCMSTGPHYNPAGK 68

HSP 3 Score: 24.2534 bits (51), Expect = 8.927e-42
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 3 
Query:  186 GPHGFHVHAL 215
            G HGFHVHAL
Sbjct:   40 GLHGFHVHAL 49
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC2_SOLLC (Superoxide dismutase [Cu-Zn] 2 OS=Solanum lycopersicum GN=SODCC.5 PE=3 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 1.963e-41
Identity = 64/86 (74.42%), Postives = 76/86 (88.37%), Query Frame = 2 
Query:  269 GKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDLPG 526
            GKEHG PED++RHAGDL N+ VG+DGTA+FT+ D QIPL+GP SIIGRAVV HADPDDLG+GGHEL+ +TGNAGGR++CGII L G
Sbjct:   67 GKEHGAPEDEVRHAGDLGNITVGEDGTASFTITDKQIPLTGPQSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRIACGIIGLQG 152

HSP 2 Score: 40.817 bits (94), Expect = 1.963e-41
Identity = 16/20 (80.00%), Postives = 18/20 (90.00%), Query Frame = 1 
Query:  214 LGNTKNGCMSTGPHFNPARK 273
            LG+T NGCMSTGPH+NPA K
Sbjct:   49 LGDTTNGCMSTGPHYNPAGK 68

HSP 3 Score: 24.2534 bits (51), Expect = 1.963e-41
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 3 
Query:  186 GPHGFHVHAL 215
            G HGFHVHAL
Sbjct:   40 GLHGFHVHAL 49
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC1_SOLLC (Superoxide dismutase [Cu-Zn] 1 OS=Solanum lycopersicum GN=SODCC.1 PE=2 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 1.963e-41
Identity = 64/86 (74.42%), Postives = 76/86 (88.37%), Query Frame = 2 
Query:  269 GKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDLPG 526
            GKEHG PED++RHAGDL N+ VG+DGTA+FT+ D QIPL+GP SIIGRAVV HADPDDLG+GGHEL+ +TGNAGGR++CGII L G
Sbjct:   67 GKEHGAPEDEVRHAGDLGNITVGEDGTASFTITDKQIPLTGPQSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRIACGIIGLQG 152

HSP 2 Score: 40.817 bits (94), Expect = 1.963e-41
Identity = 16/20 (80.00%), Postives = 18/20 (90.00%), Query Frame = 1 
Query:  214 LGNTKNGCMSTGPHFNPARK 273
            LG+T NGCMSTGPH+NPA K
Sbjct:   49 LGDTTNGCMSTGPHYNPAGK 68

HSP 3 Score: 24.2534 bits (51), Expect = 1.963e-41
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 3 
Query:  186 GPHGFHVHAL 215
            G HGFHVHAL
Sbjct:   40 GLHGFHVHAL 49
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC1_BRAJU (Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea GN=SODCC1 PE=2 SV=3)

HSP 1 Score: 144.821 bits (364), Expect = 2.552e-41
Identity = 66/86 (76.74%), Postives = 74/86 (86.05%), Query Frame = 2 
Query:  269 GKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDLPG 526
            GK HG PED  RHAGDL N+ VGDDGTATFT+ D+QIPL GPNSI+GRAVV HA+PDDLG+GGHEL+ TTGNAGGRV+CGII L G
Sbjct:   67 GKTHGAPEDANRHAGDLGNITVGDDGTATFTITDSQIPLDGPNSIVGRAVVVHAEPDDLGKGGHELSLTTGNAGGRVACGIIGLQG 152

HSP 2 Score: 40.0466 bits (92), Expect = 2.552e-41
Identity = 16/20 (80.00%), Postives = 17/20 (85.00%), Query Frame = 1 
Query:  214 LGNTKNGCMSTGPHFNPARK 273
            LG+T NGCMSTGPHFNP  K
Sbjct:   49 LGDTTNGCMSTGPHFNPEGK 68

HSP 3 Score: 24.2534 bits (51), Expect = 2.552e-41
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 3 
Query:  186 GPHGFHVHAL 215
            G HGFHVHAL
Sbjct:   40 GLHGFHVHAL 49
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_PEA (Superoxide dismutase [Cu-Zn] OS=Pisum sativum GN=SODCC PE=2 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 3.318e-41
Identity = 67/86 (77.91%), Postives = 75/86 (87.21%), Query Frame = 2 
Query:  269 GKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDLPG 526
            GKEHG PED+ RHAGDL N+NVGDDGT +FT+ DN IPL+G NSIIGRAVV HADPDDLG+GGHEL+ TTGNAGGRV+CGII L G
Sbjct:   67 GKEHGAPEDETRHAGDLGNINVGDDGTVSFTITDNHIPLTGTNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152

HSP 2 Score: 38.1206 bits (87), Expect = 3.318e-41
Identity = 15/20 (75.00%), Postives = 17/20 (85.00%), Query Frame = 1 
Query:  214 LGNTKNGCMSTGPHFNPARK 273
            LG+T NGC+STGPHFNP  K
Sbjct:   49 LGDTTNGCISTGPHFNPNGK 68

HSP 3 Score: 23.8682 bits (50), Expect = 3.318e-41
Identity = 8/10 (80.00%), Postives = 9/10 (90.00%), Query Frame = 3 
Query:  186 GPHGFHVHAL 215
            G HGFH+HAL
Sbjct:   40 GLHGFHIHAL 49
[Close]
BLAST of DY257271 vs. ExPASy Swiss-Prot
Match: SODC_ARATH (Superoxide dismutase [Cu-Zn] OS=Arabidopsis thaliana GN=SODCC PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 9.484e-41
Identity = 66/86 (76.74%), Postives = 73/86 (84.88%), Query Frame = 2 
Query:  269 GKEHGPPEDDIRHAGDLKNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVFHADPDDLGQGGHELNFTTGNAGGRVSCGIIDLPG 526
            GK HG PED  RHAGDL N+ VGDDGTATFT+ D QIPL+GPNSI+GRAVV HADPDDLG+GGHEL+  TGNAGGRV+CGII L G
Sbjct:   67 GKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHADPDDLGKGGHELSLATGNAGGRVACGIIGLQG 152

HSP 2 Score: 39.6614 bits (91), Expect = 9.484e-41
Identity = 16/20 (80.00%), Postives = 17/20 (85.00%), Query Frame = 1 
Query:  214 LGNTKNGCMSTGPHFNPARK 273
            LG+T NGCMSTGPHFNP  K
Sbjct:   49 LGDTTNGCMSTGPHFNPDGK 68

HSP 3 Score: 24.2534 bits (51), Expect = 9.484e-41
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 3 
Query:  186 GPHGFHVHAL 215
            G HGFHVHAL
Sbjct:   40 GLHGFHVHAL 49
The following BLAST results are available for this feature:
BLAST of DY257271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
SODC_CARPA1.026e-4373.91Superoxide dismutase [Cu-Zn] OS=Carica papaya GN=S... [more]
SODC_SPIOL1.335e-4380.23Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea ... [more]
SODC1_MESCR2.936e-4372.83Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum... [more]
SODC_PAUKA3.122e-4271.74Superoxide dismutase [Cu-Zn] OS=Paulownia kawakami... [more]
SODC_NICPL8.927e-4276.74Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbagi... [more]
SODC2_SOLLC1.963e-4174.42Superoxide dismutase [Cu-Zn] 2 OS=Solanum lycopers... [more]
SODC1_SOLLC1.963e-4174.42Superoxide dismutase [Cu-Zn] 1 OS=Solanum lycopers... [more]
SODC1_BRAJU2.552e-4176.74Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea ... [more]
SODC_PEA3.318e-4177.91Superoxide dismutase [Cu-Zn] OS=Pisum sativum GN=S... [more]
SODC_ARATH9.484e-4176.74Superoxide dismutase [Cu-Zn] OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1DB11FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257271 ID=DY257271; Name=DY257271; organism=Citrus sinensis; type=EST; length=1221bp
CAAGGAGGTTACTAGATGATGATGACAAGATGAAATGTTGTGATGCATGT
TTTTTGAGTACTACTAATAAGACAGGAGGTTGTAAATATGGCGTGTTGTA
TGCATCTCCTGTCGTATGCTTTTTCTTTTTCCCTTTTTCCCAGATGTCAA
TATGCTTTGACGTGAAATACTACCTTGTGGACTCTGGACCTCATGGATTC
CATGTTCATGCTCTTAGGAAACACAAAAAATGGTTGCATGTCTACCGGAC
CCCACTTTAACCCTGCTAGGAAAAGAACATGGACCTCCAGAGGATGACAT
TCGTCATGCTGGTGACTTAAAAAATGTCAATGTTGGTGATGATGGTACTG
CTACTTTTACCGTTGTTGACAATCAAATTCCTCTTTCTGGACCAAATTCC
ATTATTGGAAGGGCTGTTGTATTCCACGCAGATCCCGATGATCTTGGCCA
GGGCGGTCATGAGCTAAACTTCACAACTGGAAATGCTGGTGGCAGAGTAT
CTTGCGGCATCATTGACCTCCCTGGGGGAAGCCGCATCTCATCGGACTGT
AATATATTCTTTTGAAATCACGCTTTGTTGCATTATCCTCTTCTCTGCAG
GAGTGACAACCTCCCGACCATGATCTAGAAAAAAAGAAATCAAGAATTTG
CTGGGAAAGCCCAACCCTTTACCAAAATCCCCCTTTTTAATACCCGTCAA
AAAATCCACGCTCTAAGGCGAAAACCCTGAGGGCCCGCCACCCCGCCGGA
GAAGGGACCACTGCATGTTTTTCCTCCTCTTCGATCAACGTCTTTCTGTT
TCTTTGATTTATCAAACTCTCCATCCCCCACAAGTTTTTCCTGCGAGGTG
TGGCCCGACAGAGTACAATGCCCATTCTTGGTAAAAAAANTACTGCCTAA
AGGCTAGCCGCACTCGCAAAAGTAAACCCCATTGTATCCCTCTTTTTTCC
CCTCCCTCTGTATCTTTACTCATCGTCCTATTCTCCTACCTCTCCTACAT
CGTCTCGTCCTCACACCGAATCACTTCCCTAGACCCCACACAACATTCTG
CATTGTCTTTACAGTCACAAACTCATTTTCCCCTCCCTCCTTATATCTTC
CCACATTCTCATCCCCACCCGACCCCCCGCTTTCCAACCCCCTCCCCCAC
CCTCTCCCACCGCCCGTCTATCGTATCTTTCCTATCTCCTACTTGCTCTA
ACATCATATGACGCTCTTACT
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