FC871251

Overview
NameFC871251
Unique NameFC871251
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length405
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6266 contig Csv1_Contig6266:117..521. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871251 vs. ExPASy Swiss-Prot
Match: RL4_PRUAR (60S ribosomal protein L4 OS=Prunus armeniaca GN=RPL4 PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 2.109e-53
Identity = 99/117 (84.62%), Postives = 106/117 (90.60%), Query Frame = 3
Query:    3 TGQSLEGDMAADASSTVPMPEVKKASNRPDIVGYLHSNNTKNSRQPYADSKKAGHQTSAESWGTGRAVTRIPRVPGGGTHRAGQGAFGNM*RGGRMFAPTKIWRRWHRKINVNQKRY 353
            T QSLEGDMA D + TV +P+V KAS RPDIV ++HSN +KNSRQPYA SKKAGHQTSAESWGTGRAV+RIPRVPGGGTHRAGQGAFGNM RGGRMFAPTKIWRRWHRKINVNQKRY
Sbjct:   13 TVQSLEGDMATDQTQTVALPDVMKASIRPDIVTFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRY 129          
BLAST of FC871251 vs. ExPASy Swiss-Prot
Match: RL4A_ARATH (60S ribosomal protein L4-1 OS=Arabidopsis thaliana GN=RPL4A PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 5.943e-48
Identity = 88/117 (75.21%), Postives = 101/117 (86.32%), Query Frame = 3
Query:    3 TGQSLEGDMAADASSTVPMPEVKKASNRPDIVGYLHSNNTKNSRQPYADSKKAGHQTSAESWGTGRAVTRIPRVPGGGTHRAGQGAFGNM*RGGRMFAPTKIWRRWHRKINVNQKRY 353
            T Q+L+GDM+ D SSTV +P+V  A  RPDIV ++H+  + NSRQPYA SKKAGHQTSAESWGTGRAV+RIPRVPGGGTHRAGQ AFGNM RGGRMFAPTKIWRRWHR++NVN KR+
Sbjct:   11 TIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRH 127          
BLAST of FC871251 vs. ExPASy Swiss-Prot
Match: RL4B_ARATH (60S ribosomal protein L4-2 OS=Arabidopsis thaliana GN=RPL4D PE=1 SV=2)

HSP 1 Score: 188.348 bits (477), Expect = 1.014e-47
Identity = 87/117 (74.36%), Postives = 100/117 (85.47%), Query Frame = 3
Query:    3 TGQSLEGDMAADASSTVPMPEVKKASNRPDIVGYLHSNNTKNSRQPYADSKKAGHQTSAESWGTGRAVTRIPRVPGGGTHRAGQGAFGNM*RGGRMFAPTKIWRRWHRKINVNQKRY 353
            T Q L+GDM+ D S+TV +P+V  A  RPDIV ++H+  + NSRQPYA SKKAGHQTSAESWGTGRAV+RIPRVPGGGTHRAGQ AFGNM RGGRMFAPTKIWRRWHR++NVN KR+
Sbjct:   12 TVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRH 128          
BLAST of FC871251 vs. ExPASy Swiss-Prot
Match: RL4B_XENLA (60S ribosomal protein L4-B (Fragment) OS=Xenopus laevis GN=rpl4-B PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.086e-41
Identity = 79/114 (69.30%), Postives = 89/114 (78.07%), Query Frame = 3
Query:   12 SLEGDMAADASSTVPMPEVKKASNRPDIVGYLHSNNTKNSRQPYADSKKAGHQTSAESWGTGRAVTRIPRVPGGGTHRAGQGAFGNM*RGGRMFAPTKIWRRWHRKINVNQKRY 353
            S+  +    +   V MP V KA  RPDIV ++H+N  KN+RQPYA SK AGHQTSAESWGTGRAV RIPRV GGGTHR+GQGAFGNM RGGRMFAPTK WRRWHR++N  QKRY
Sbjct:    8 SVYSEKGETSGKNVTMPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSKLAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRY 121          
BLAST of FC871251 vs. ExPASy Swiss-Prot
Match: RL4A_XENLA (60S ribosomal protein L4-A OS=Xenopus laevis GN=rpl4-A PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.852e-41
Identity = 78/114 (68.42%), Postives = 89/114 (78.07%), Query Frame = 3
Query:   12 SLEGDMAADASSTVPMPEVKKASNRPDIVGYLHSNNTKNSRQPYADSKKAGHQTSAESWGTGRAVTRIPRVPGGGTHRAGQGAFGNM*RGGRMFAPTKIWRRWHRKINVNQKRY 353
            S+  +    +   V MP V +A  RPDIV ++H+N  KN+RQPYA SK AGHQTSAESWGTGRAV RIPRV GGGTHR+GQGAFGNM RGGRMFAPTK WRRWHR++N  QKRY
Sbjct:   13 SVYSEKGESSGKNVTMPAVFRAPIRPDIVNFVHTNLRKNNRQPYAVSKLAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRY 126          
BLAST of FC871251 vs. ExPASy Swiss-Prot
Match: RL4_RAT (60S ribosomal protein L4 OS=Rattus norvegicus GN=Rpl4 PE=1 SV=3)

HSP 1 Score: 166.007 bits (419), Expect = 5.388e-41
Identity = 77/114 (67.54%), Postives = 89/114 (78.07%), Query Frame = 3
Query:   12 SLEGDMAADASSTVPMPEVKKASNRPDIVGYLHSNNTKNSRQPYADSKKAGHQTSAESWGTGRAVTRIPRVPGGGTHRAGQGAFGNM*RGGRMFAPTKIWRRWHRKINVNQKRY 353
            S+  +    +   V +P V KA  RPDIV ++H+N  KN+RQPYA S+ AGHQTSAESWGTGRAV RIPRV GGGTHR+GQGAFGNM RGGRMFAPTK WRRWHR++N  QKRY
Sbjct:    9 SVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRY 122          
BLAST of FC871251 vs. ExPASy Swiss-Prot
Match: RL4_PONAB (60S ribosomal protein L4 OS=Pongo abelii GN=RPL4 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 5.388e-41
Identity = 77/114 (67.54%), Postives = 89/114 (78.07%), Query Frame = 3
Query:   12 SLEGDMAADASSTVPMPEVKKASNRPDIVGYLHSNNTKNSRQPYADSKKAGHQTSAESWGTGRAVTRIPRVPGGGTHRAGQGAFGNM*RGGRMFAPTKIWRRWHRKINVNQKRY 353
            S+  +    +   V +P V KA  RPDIV ++H+N  KN+RQPYA S+ AGHQTSAESWGTGRAV RIPRV GGGTHR+GQGAFGNM RGGRMFAPTK WRRWHR++N  QKRY
Sbjct:    9 SVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRY 122          
BLAST of FC871251 vs. ExPASy Swiss-Prot
Match: RL4_MOUSE (60S ribosomal protein L4 OS=Mus musculus GN=Rpl4 PE=1 SV=3)

HSP 1 Score: 166.007 bits (419), Expect = 5.388e-41
Identity = 77/114 (67.54%), Postives = 89/114 (78.07%), Query Frame = 3
Query:   12 SLEGDMAADASSTVPMPEVKKASNRPDIVGYLHSNNTKNSRQPYADSKKAGHQTSAESWGTGRAVTRIPRVPGGGTHRAGQGAFGNM*RGGRMFAPTKIWRRWHRKINVNQKRY 353
            S+  +    +   V +P V KA  RPDIV ++H+N  KN+RQPYA S+ AGHQTSAESWGTGRAV RIPRV GGGTHR+GQGAFGNM RGGRMFAPTK WRRWHR++N  QKRY
Sbjct:    9 SVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRY 122          
BLAST of FC871251 vs. ExPASy Swiss-Prot
Match: RL4_MACFA (60S ribosomal protein L4 OS=Macaca fascicularis GN=RPL4 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 5.388e-41
Identity = 77/114 (67.54%), Postives = 89/114 (78.07%), Query Frame = 3
Query:   12 SLEGDMAADASSTVPMPEVKKASNRPDIVGYLHSNNTKNSRQPYADSKKAGHQTSAESWGTGRAVTRIPRVPGGGTHRAGQGAFGNM*RGGRMFAPTKIWRRWHRKINVNQKRY 353
            S+  +    +   V +P V KA  RPDIV ++H+N  KN+RQPYA S+ AGHQTSAESWGTGRAV RIPRV GGGTHR+GQGAFGNM RGGRMFAPTK WRRWHR++N  QKRY
Sbjct:    9 SVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRY 122          
BLAST of FC871251 vs. ExPASy Swiss-Prot
Match: RL4_HUMAN (60S ribosomal protein L4 OS=Homo sapiens GN=RPL4 PE=1 SV=5)

HSP 1 Score: 166.007 bits (419), Expect = 5.388e-41
Identity = 77/114 (67.54%), Postives = 89/114 (78.07%), Query Frame = 3
Query:   12 SLEGDMAADASSTVPMPEVKKASNRPDIVGYLHSNNTKNSRQPYADSKKAGHQTSAESWGTGRAVTRIPRVPGGGTHRAGQGAFGNM*RGGRMFAPTKIWRRWHRKINVNQKRY 353
            S+  +    +   V +P V KA  RPDIV ++H+N  KN+RQPYA S+ AGHQTSAESWGTGRAV RIPRV GGGTHR+GQGAFGNM RGGRMFAPTK WRRWHR++N  QKRY
Sbjct:    9 SVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRY 122          
The following BLAST results are available for this feature:
BLAST of FC871251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RL4_PRUAR2.109e-5384.6260S ribosomal protein L4 OS=Prunus armeniaca GN=RP... [more]
RL4A_ARATH5.943e-4875.2160S ribosomal protein L4-1 OS=Arabidopsis thaliana... [more]
RL4B_ARATH1.014e-4774.3660S ribosomal protein L4-2 OS=Arabidopsis thaliana... [more]
RL4B_XENLA1.086e-4169.3060S ribosomal protein L4-B (Fragment) OS=Xenopus l... [more]
RL4A_XENLA1.852e-4168.4260S ribosomal protein L4-A OS=Xenopus laevis GN=rp... [more]
RL4_RAT5.388e-4167.5460S ribosomal protein L4 OS=Rattus norvegicus GN=R... [more]
RL4_PONAB5.388e-4167.5460S ribosomal protein L4 OS=Pongo abelii GN=RPL4 P... [more]
RL4_MOUSE5.388e-4167.5460S ribosomal protein L4 OS=Mus musculus GN=Rpl4 P... [more]
RL4_MACFA5.388e-4167.5460S ribosomal protein L4 OS=Macaca fascicularis GN... [more]
RL4_HUMAN5.388e-4167.5460S ribosomal protein L4 OS=Homo sapiens GN=RPL4 P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK3DF08FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3DF08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871251 ID=FC871251; Name=FC871251; organism=Citrus sinensis; type=EST; length=405bp
CAACCGGCCAGTCTTTGGAAGGTGACATGGCCGCCGACGCAAGCTCCACC
GTCCCCATGCCCGAGGTCAAGAAGGCCTCTAACCGACCCGACATCGTGGG
CTACCTTCACTCTAACAACACCAAGAACAGCCGCCAGCCGTACGCCGATT
CCAAGAAGGCAGGGCACCAGACCTCCGCCGAATCATGGGGTACCGGTCGC
GCCGTCACCCGTATCCCCCGAGTTCCCGGAGGCGGTACCCACCGCGCCGG
CCAGGGAGCCTTCGGTAACATGTGACGCGGTGGTCGCATGTTCGCTCCCA
CAAAGATCTGGCGCCGATGGCACCGTAAGATCAACGTCAATCAGAAGCGA
TATGCCATCGTTTCCGCCATTGCCGCCTCCGCTGTCCCCCACACTTGAGA
GGGCC
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