DT214494
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2) HSP 1 Score: 154.066 bits (388), Expect = 1.028e-36 Identity = 79/173 (45.66%), Postives = 108/173 (62.43%), Query Frame = -1 Query: 386 HETFASRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPR-KXXXXXXXXXXXXXYASNG--APGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 895 + FASRY S K+AK++ D T S+GYGFVRF D+N++ A+ EM G C RP+R+G ATP+ K G + Q D++N+T+FVGGL V++E+L+ F +GEI VKIP GKGCGFVQF NR++AE A+++L G +G +RLSWGRN Sbjct: 203 YSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSKAHVFSPVNVVPVSMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWGRN 375
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 1.176e-32 Identity = 71/170 (41.76%), Postives = 100/170 (58.82%), Query Frame = -1 Query: 386 TFASRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATP--RKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 889 TF S YPS +AK++ D TG S+ YGFVRF + E+ A+ M G C RP+RI A+P R SN P Q S D NTT+FVGGL N++++DL+ F +G I ++KIP GKGCGFVQ++ + AE+A++ + G ++G +RL+WG N Sbjct: 201 TFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPKSRASIAADSALGIVPTSTSNRQPNQDLCSM-DPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLAWGHN 369
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1 SV=2) HSP 1 Score: 120.553 bits (301), Expect = 1.259e-26 Identity = 72/205 (35.12%), Postives = 103/205 (50.24%), Query Frame = -1 Query: 386 ETFASRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNG--------APGQGPQSEG----------------------------DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRN 892 E F +RY S AK+V D TG SKGYGFV+F + +E+ A++EM GV+ + R +++G + ++ + N + GQ S G D +NTT+F+GGL VT+++LR F +G I VKIPVGK CGFVQ+ +R +AE A+ + G I VRLSWGR+ Sbjct: 181 ELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRAIKVGPTSGQQQHVSGNNDYNRSSSSLNNENVDSRFLSKGQSFLSNGNNNMGFKRNHMSQFIYPVQQQPSLNHFTDPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCGFVQYVDRLSAEAAIAGMQGFPIANSRVRLSWGRS 385
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: TIAR_MOUSE (Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 6.925e-17 Identity = 56/183 (30.60%), Postives = 86/183 (46.99%), Query Frame = -1 Query: 341 YPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPAN--KQF-RADYG--NQWS 874 + + A+VV D TG+SKGYGFV F + + A+ M G + R +R AT + Q N T++ GG+ +TD+ +RQ FS +G+I +++ KG FV+F+ E+A A+ +NGT I V+ WG+ + K F + DY QWS Sbjct: 137 FGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQS-----SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQWGQWS 314
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: TIAR_HUMAN (Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 6.925e-17 Identity = 56/183 (30.60%), Postives = 86/183 (46.99%), Query Frame = -1 Query: 341 YPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGRNPAN--KQF-RADYG--NQWS 874 + + A+VV D TG+SKGYGFV F + + A+ M G + R +R AT + Q N T++ GG+ +TD+ +RQ FS +G+I +++ KG FV+F+ E+A A+ +NGT I V+ WG+ + K F + DY QWS Sbjct: 120 FGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQS-----SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQWGQWS 297
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: TIA1_MOUSE (Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 6.925e-17 Identity = 52/176 (29.55%), Postives = 88/176 (50.00%), Query Frame = -1 Query: 356 VKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR------NPANKQFRADY 865 + A+VV D TG+SKGYGFV F + + A+ +M G + R +R AT + + + S+ +N T++ GG+ +T++ +RQ FS +G+I +++ KG FV+F++ E+A A+ +NGT I V+ WG+ NP +Q + Y Sbjct: 132 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVV-----SQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFSSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGY 302
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: TIA1_HUMAN (Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3) HSP 1 Score: 87.8113 bits (216), Expect = 9.044e-17 Identity = 53/176 (30.11%), Postives = 86/176 (48.86%), Query Frame = -1 Query: 356 VKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR------NPANKQFRADY 865 + A+VV D TG+SKGYGFV F + + A+ +M G + R +R AT + + + Q SN T++ GG+ +T++ +RQ FS +G+I +++ KG FV+F + E+A A+ +NGT I V+ WG+ NP +Q + Y Sbjct: 132 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQS-----SPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGY 302
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: NGR1_YEAST (Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae GN=NGR1 PE=1 SV=2) HSP 1 Score: 83.5741 bits (205), Expect = 1.706e-15 Identity = 38/76 (50.00%), Postives = 51/76 (67.11%), Query Frame = -1 Query: 389 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANRENAEEALHKLNGTVIGKQSVRLSWGR 616 D +NTT+FVGGL P T+ LR F +G I +V+IP GK CGFV+F R +AE ++ L G ++G +RLSWGR Sbjct: 356 DPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNCGFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWGR 431
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: PABP_MAGGR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Magnaporthe grisea GN=PAB1 PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 4.201e-14 Identity = 49/160 (30.63%), Postives = 81/160 (50.62%), Query Frame = -1 Query: 434 HETFASRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP------VGKGCGFVQFANRENAEEALHKLN 895 H+TFA+ + ++ + KV D N G SKGYGFV + D SQA+ +NG+ + + + +G P+K Q E ++ T I+V ++P VTD++ R F +YG++ S + +G GFV F + E+A +A+ +LN Sbjct: 166 HDTFAA-FGNILSCKVAQDEN-GNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDR-------------------QSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELN 304
BLAST of DT214494 vs. ExPASy Swiss-Prot
Match: EPABB_XENLA (Embryonic polyadenylate-binding protein B OS=Xenopus laevis GN=epabp-B PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 7.166e-14 Identity = 50/157 (31.85%), Postives = 78/157 (49.68%), Query Frame = -1 Query: 422 SRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----GKGCGFVQFANRENAEEALHKLNGTVI 880 S + + + KV+ D N+GRS+G+GFV +G+ E +A+TEMNG + R + +G A R QG ++V LD + D+ LR+ FS YG I S K+ KG GFV F++ E A +A+ ++NG ++ Sbjct: 212 SAFGNTLSVKVMMD-NSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQG---------VNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIV 358 The following BLAST results are available for this feature:
BLAST of DT214494 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 57
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Sequences
The
following sequences are available for this feature:
EST sequence >DT214494 ID=DT214494; Name=DT214494; organism=Citrus sinensis; type=EST; length=895bpback to top |