EY680081

Overview
NameEY680081
Unique NameEY680081
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length897
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11028 contig Csv1_Contig11028:269..1165. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY680081 vs. ExPASy Swiss-Prot
Match: RF2_SYNY3 (Peptide chain release factor 2 OS=Synechocystis sp. (strain PCC 6803) GN=prfB PE=3 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 1.109e-22
Identity = 55/159 (34.59%), Postives = 91/159 (57.23%), Query Frame = 1
Query:  121 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLISQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHWLI 597
            + WDD  ++ ++L  L ++   +      + + ++++ I +L E+E  D  L   A      + K LD++E+ +LL GP D +GA++TI AG+ G   + WAE LL MY RW++K+GY+  + +       G+KS T+E E  YA+GYL  E G H L+
Sbjct:   46 DFWDDTDQAQQILQTLNETKSQLEQWGIWQQQWQDSQAIVELLELED-DQALLTEAETTLEQLQKELDRWELQQLLSGPYDAKGATLTINAGAGGTDAQDWAEMLLRMYTRWSEKQGYKVHLAEISEGDEAGLKSVTLEIEGRYAYGYLKSEKGTHRLV 203          
BLAST of EY680081 vs. ExPASy Swiss-Prot
Match: RF2_SALTO (Peptide chain release factor 2 OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=prfB PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.892e-22
Identity = 64/192 (33.33%), Postives = 101/192 (52.60%), Query Frame = 1
Query:  121 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLISQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHWLIN---FPNGSFPHGVKTTVSILAKVQRVTHFLFP 687
            +LWDD  ++ +V  +L+     +N L +LR + ++AK++ +LAE E+ D G           ++K +D+ E+  LL G  D   A V I+AG+ G+    +AE LL MY+RWA++ GY   V +    +  G+KSAT   +  YA+G LS E+G H L+    F N          V +L  V++  H   P
Sbjct:   44 DLWDDQARAQQVTSQLSYVNGEINKLAELRSRLDDAKVLLELAEAES-DPGALTEVEAEVAGLAKAIDEMEVRTLLSGEYDSREALVAIRAGAGGVDAADFAEMLLRMYLRWAERHGYPTEVYETSYAEEAGLKSATFTVKVPYAYGTLSVESGTHRLVRISPFDNQGRRQTSFAGVEVLPVVEQTDHIDIP 234          
BLAST of EY680081 vs. ExPASy Swiss-Prot
Match: RF2_CORGL (Peptide chain release factor 2 OS=Corynebacterium glutamicum GN=prfB PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.215e-22
Identity = 63/199 (31.66%), Postives = 99/199 (49.75%), Query Frame = 1
Query:  100 EAMVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLISQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHWLIN---FPNGSFPHGVKTTVSILAKVQRVTHFLFP 687
            EA   + +LWDDP  + +V  +L+     +  + DLR + E+  ++ +LAE E  D  +   A     D+  L+D  E+  +L G  D   A + I++G+ G+    WAE L+ MY RWA+K G++  + D    +  G+KSAT     +Y +G LS E GAH L+    F N          V +L  V++V     P
Sbjct:   36 EAQAADPSLWDDPDHAQQVTSELSHVQAELRKITDLRQRIEDLPIMVELAEEEDGDTSI---AEEELADLRSLIDALEVKTMLSGEYDAREAVINIRSGAGGVDAADWAEMLMRMYTRWAEKNGHKVDIYDISYAEEAGIKSATFVVHGDYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEVEVLPVVEKVDSIDIP 231          
BLAST of EY680081 vs. ExPASy Swiss-Prot
Match: RF2_CORGB (Peptide chain release factor 2 OS=Corynebacterium glutamicum (strain R) GN=prfB PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.215e-22
Identity = 63/199 (31.66%), Postives = 99/199 (49.75%), Query Frame = 1
Query:  100 EAMVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLISQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHWLIN---FPNGSFPHGVKTTVSILAKVQRVTHFLFP 687
            EA   + +LWDDP  + +V  +L+     +  + DLR + E+  ++ +LAE E  D  +   A     D+  L+D  E+  +L G  D   A + I++G+ G+    WAE L+ MY RWA+K G++  + D    +  G+KSAT     +Y +G LS E GAH L+    F N          V +L  V++V     P
Sbjct:   36 EAQAADPSLWDDPDHAQQVTSELSHVQAELRKITDLRQRIEDLPIMVELAEEEDGDTSI---AEEELADLRSLIDALEVKTMLSGEYDAREAVINIRSGAGGVDAADWAEMLMRMYTRWAEKNGHKVDIYDISYAEEAGIKSATFVVHGDYMYGQLSVEQGAHRLVRISPFDNQGRRQTSFAEVEVLPVVEKVDSIDIP 231          
BLAST of EY680081 vs. ExPASy Swiss-Prot
Match: RF2_CYAP8 (Peptide chain release factor 2 OS=Cyanothece sp. (strain PCC 8801) GN=prfB PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.389e-22
Identity = 58/166 (34.94%), Postives = 90/166 (54.22%), Query Frame = 1
Query:  100 EAMVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLISQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHWLI 597
            E +    + WD+   + + L +L D    V        + E+ K I++L E+E  D  L + A      ++  LD++E+ +LL G  D +GA +TI AG+ G   + WAE LL MY RW +++GY+  + +       G+KSAT+E E  YA+GYL GE G H L+
Sbjct:   37 EQIAAQPDFWDNQETAQKTLQQLNDLKSSVEEYHQWMGQLEDLKAIAELLELEE-DATLNEEAEANLTQLNHELDRWELQRLLSGIYDSKGAVLTINAGAGGTDAQDWAEMLLRMYTRWGEQQGYKVHLTEISEGDEAGIKSATLEIEGRYAYGYLKGEKGTHRLV 201          
BLAST of EY680081 vs. ExPASy Swiss-Prot
Match: RF2_SALAI (Peptide chain release factor 2 OS=Salinispora arenicola (strain CNS-205) GN=prfB PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.092e-21
Identity = 62/192 (32.29%), Postives = 100/192 (52.08%), Query Frame = 1
Query:  121 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLISQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHWLIN---FPNGSFPHGVKTTVSILAKVQRVTHFLFP 687
            +LWDD  ++ +V  +L+     +  L DLR + ++ +++ +LAE E+ D G+          ++K +D+ E+  LL G  D   A V I+AG+ G+    +AE LL MY+RWA++ GY   V +    +  G+KSAT   +  YA+G LS E+G H L+    F N          V +L  V++  H   P
Sbjct:   44 DLWDDQARAQQVTSQLSYVNGEITKLTDLRSRLDDTQVLLELAEAES-DPGVLTEVAAEITGLAKSIDEMEVRTLLSGEYDSREALVAIRAGAGGVDAADFAEMLLRMYLRWAERHGYPTEVYETSYAEEAGLKSATFTVKVPYAYGTLSVESGTHRLVRISPFDNQGRRQTSFAGVEVLPVVEQTDHIDIP 234          
BLAST of EY680081 vs. ExPASy Swiss-Prot
Match: RF2_RENSM (Peptide chain release factor 2 OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=prfB PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.732e-21
Identity = 57/159 (35.85%), Postives = 91/159 (57.23%), Query Frame = 1
Query:  121 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLISQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHWLI 597
            +LWD+P ++ +V  KL+ +   +  L+ L  + ++ +++ +LAE E  D      A +  + + K L + E+  LL G  D   A VTI++G+ G+    +AE LL MY+RWA++ GY   V+D    +  G+KSAT E +  YAFG LS E G H L+
Sbjct:   47 DLWDNPAEAQKVTSKLSHAQSKLERLETLTARIDDLEVLVELAESEH-DEDSLAEASKELVSLQKSLQELEVVTLLAGEYDEREAVVTIRSGAGGVDAADFAEMLLRMYLRWAERHGYPTSVLDTSYAEEAGLKSATFEVKAPYAFGTLSVEAGTHRLV 204          
BLAST of EY680081 vs. ExPASy Swiss-Prot
Match: RF2_BEUC1 (Peptide chain release factor 2 OS=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=prfB PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.086e-21
Identity = 62/194 (31.96%), Postives = 98/194 (50.52%), Query Frame = 1
Query:  121 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLISQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHWLIN---FPNGSFPHGVKTTVSILAKVQRVTHFLFPGT 693
            +LWDDP  + +V  +L+ +   +  L  LR + ++ + + QLA  E  D      A      +   + + E+  LL G  D   A VTI++G+ G+    +AE LL MY+RWA+++GY  +V+D    +  G+KSAT E +  YAFG LS E G H L+    F N          V ++  +++  H   P T
Sbjct:   43 DLWDDPDAAQKVTSRLSHTQSELERLDTLRSRIDDLETLVQLAAEED-DADTLAEAEAELTKIRTSMGELEVRTLLAGEYDSREAVVTIRSGAGGVDAADFAEMLLRMYLRWAERKGYPTQVLDTSYAEEAGLKSATFEVKVPYAFGTLSVEAGTHRLVRISPFDNQGRRQTSFAAVEVIPLIEQTDHIDIPET 235          
BLAST of EY680081 vs. ExPASy Swiss-Prot
Match: RF2_THERP (Peptide chain release factor 2 OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=prfB PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.771e-20
Identity = 54/177 (30.51%), Postives = 96/177 (54.24%), Query Frame = 1
Query:  121 NLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLISQLAEMEAIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHWLINFPNGSFPHGVKTTVSIL 651
            +LW DP ++  +L +L+    +V   + L   +++A+ + +L  + + D  L  +  + + ++++ + Q E+  LL G  D   A + + AG+ G+  + WAE LL MY+RWA + G+   VVD    +  G+KSAT+E    YA+GYL GE G H L+        H   T+ +++
Sbjct:   43 DLWQDPQRAQSLLRRLSQLRDLVQEWETL---SQQARDLLELRALASDDLELAGQVEQEATELAERVRQLELRLLLTGQYDGHDAILAVHAGTGGVDAQDWAEMLLRMYLRWAQRAGFAAEVVDLLEGEEAGIKSATVEVRGPYAYGYLKGEAGTHRLVRLSPFDAAHRRHTSFALV 216          
BLAST of EY680081 vs. ExPASy Swiss-Prot
Match: RF2_MYCSS (Peptide chain release factor 2 OS=Mycobacterium sp. (strain MCS) GN=prfB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.313e-20
Identity = 67/209 (32.06%), Postives = 106/209 (50.72%), Query Frame = 1
Query:   88 RIKQEAMVRNYNLWDDPTKSNEVLVKLADSLKVVNALKDLRYKAEEAKLISQLAEME----AIDYGLFKRAYRASLDVSKLLDQYEMSKLLRGPNDVEGASVTIKAGSNGICPEIWAEQLLNMYVRWADKEGYRGRVVDKCCCKNGGVKSATIEFEFEYAFGYLSGETGAHWLIN---FPNGSFPHGVKTTVSILAKVQRVTHFLFPGT 693
            +++QEA   + NLWDD +++ +V  +L+ +   +  +++LR + E+  ++ ++A  E    A + G    A  A L V   ++  E+  LL G  D   A VTI++G+ G+    WAE L+ MY+RWA++  Y   V D    +  G+KSAT      YA+G LS E G H L+    F N S        V +L  V+   H   P T
Sbjct:   34 KLEQEAS--DPNLWDDQSRAQKVTSELSHAQNELRRVEELRQRVEDLPVLYEMAAEEEGQDAENAGAEADAELAKLRVD--IEAMEVRTLLSGEYDEREAVVTIRSGAGGVDAADWAEMLMRMYIRWAEQHDYPVEVFDTSYAEEAGIKSATFAVHAPYAYGTLSVEQGTHRLVRISPFDNQSRRQTSFADVEVLPVVETTDHIDVPET 238          
The following BLAST results are available for this feature:
BLAST of EY680081 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
RF2_SYNY31.109e-2234.59Peptide chain release factor 2 OS=Synechocystis sp... [more]
RF2_SALTO1.892e-2233.33Peptide chain release factor 2 OS=Salinispora trop... [more]
RF2_CORGL4.215e-2231.66Peptide chain release factor 2 OS=Corynebacterium ... [more]
RF2_CORGB4.215e-2231.66Peptide chain release factor 2 OS=Corynebacterium ... [more]
RF2_CYAP89.389e-2234.94Peptide chain release factor 2 OS=Cyanothece sp. (... [more]
RF2_SALAI2.092e-2132.29Peptide chain release factor 2 OS=Salinispora aren... [more]
RF2_RENSM2.732e-2135.85Peptide chain release factor 2 OS=Renibacterium sa... [more]
RF2_BEUC16.086e-2131.96Peptide chain release factor 2 OS=Beutenbergia cav... [more]
RF2_THERP1.771e-2030.51Peptide chain release factor 2 OS=Thermomicrobium ... [more]
RF2_MYCSS2.313e-2032.06Peptide chain release factor 2 OS=Mycobacterium sp... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-007-C01-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680081 ID=EY680081; Name=EY680081; organism=Citrus sinensis; type=EST; length=897bp
CCACGCGTCCGGAAAAAGAAGATTGAAGATGCAGTTCTTCGTGCTGAGAG
TTTAGCAACAACAGCACTAGAACTCGAGGAAGCAACAAGAATTAAGCAGG
AAGCGATGGTCCGTAACTATAACCTTTGGGATGACCCAACTAAATCCAAT
GAAGTTCTTGTCAAGCTAGCTGACAGTCTCAAAGTAGTTAATGCTCTCAA
AGATCTACGATATAAGGCTGAGGAAGCAAAGTTGATATCACAGTTGGCTG
AGATGGAAGCTATCGATTATGGGCTTTTCAAGCGAGCATACCGTGCATCT
TTAGATGTGAGCAAGCTATTGGATCAGTATGAGATGTCCAAGCTTCTTCG
TGGGCCAAATGACGTGGAAGGAGCATCTGTAACTATTAAAGCTGGATCAA
ATGGCATCTGTCCTGAGATATGGGCAGAACAACTTCTCAACATGTATGTT
AGATGGGCTGACAAGGAAGGATATAGAGGAAGGGTAGTTGATAAGTGTTG
CTGCAAGAATGGTGGTGTCAAGTCCGCAACTATTGAATTCGAATTTGAGT
ATGCTTTTGGCTATCTTTCCGGAGAGACAGGTGCTCACTGGCTCATTAAT
TTTCCGAATGGTTCTTTTCCTCATGGAGTAAAAACTACGGTTTCCATTCT
GGCTAAAGTTCAGAGGGTAACCCATTTTCTCTTCCCTGGAACCCAAAGCC
CCCCCAAAAACATTTCTGATTACTTTCCTAAAAAATCATTTTTTGGCCAA
AAGCTTCTAAAATCATTTTTTATTTCAAATTACCCTTTTTTTGGGGAATT
GTTTTTCCCAATGTGTATGCCCATTTAGTGCCCCCGGGTGACCCTTTTTT
TGTTAAATATAAAATTGAATTTTTGTCTGAGGAACACATTAACCAAG
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