FC871204

Overview
NameFC871204
Unique NameFC871204
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6886 contig Csv1_Contig6886:1..634. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_DICDI (60S ribosomal protein L18 OS=Dictyostelium discoideum GN=rpl18 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 6.270e-44
Identity = 90/154 (58.44%), Postives = 111/154 (72.08%), Query Frame = 2
Query:   59 NPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLKGQD--KVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRG-AKRREALRHFGPAPGAKGSHTAPYVRGHGKKQER 511
            NPYH LL++LY+FLARRT S FNK +LKRL Q++TNR P+S+SR+   +K +   K+AVCV TV +D RLL  PKLT+ AL+FTE AR RIV AGG+A +FDQ AL  P G NT L++G  K RE  +HFG APG  GSH  PYVR  G K +R
Sbjct:   22 NPYHALLVKLYRFLARRTNSKFNKVVLKRLLQTKTNRPPVSISRIANLMKDRKSGKIAVCVGTVVDDERLLDCPKLTVCALRFTETARSRIVKAGGKALSFDQFALVRPRGNNTFLIKGVTKAREVYKHFGRAPGLPGSHARPYVRSEGIKFQR 175          
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL182_ARATH (60S ribosomal protein L18-2 OS=Arabidopsis thaliana GN=RPL18B PE=2 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 6.933e-43
Identity = 89/172 (51.74%), Postives = 122/172 (70.93%), Query Frame = 2
Query:    2 DLKAGGRTKNRNIKPTRTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLKG-QDKVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAKR-REALRHFGPAPGAKGSHTAPYVRGHGKKQER 511
            DL AGG++K       ++ + Y  L ++LY+FL RRT S FN  ILKRL  S+ N+ P+S+SR+V+ + G +DK+AV V T+T+D R+  +P + + AL+FTE+AR RI  AGG+  TFDQLAL+ P G+NTVLLRG K  REA++HFGPAPG   SH+ PYVR  G+K E+
Sbjct:    4 DLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKAPLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEK 175          
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL183_ARATH (60S ribosomal protein L18-3 OS=Arabidopsis thaliana GN=RPL18C PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.634e-42
Identity = 89/172 (51.74%), Postives = 123/172 (71.51%), Query Frame = 2
Query:    2 DLKAGGRTKNRNIKPTRTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLKGQD-KVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAKR-REALRHFGPAPGAKGSHTAPYVRGHGKKQER 511
            DL AGG++K       ++ + Y  LL++LY+FL RR+ S FN  ILKRL  S+ N+ P+S+SR+V+ + G+D K+AV V T+T+D R+  +P + + AL+FTE+AR RI  AGG+  TFDQLAL+ P G+NTVLLRG K  REA++HFGPAPG   S+T PYVR  G+K E+
Sbjct:    4 DLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKAPLSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFEK 175          
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_BOMMO (60S ribosomal protein L18 OS=Bombyx mori GN=RpL18 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 7.665e-42
Identity = 90/167 (53.89%), Postives = 122/167 (73.05%), Query Frame = 2
Query:   29 NRNIKPT--RTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLKGQDK---VAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAKR-REALRHFGPAPGAKGSHTAPYVRGHGKKQER 511
            +R ++ T  ++ + Y  LL++LY++LARRT + FN+ +L+RL  SR NR PISVSR+ +++K   +   +AV V TVTND RL  +PK+T+ AL  TEKAR RI+AAGG+  TFDQLAL+ PTGK TVL++G +  REA+RHFGPAPGA  SHT PYVR  G ++ R
Sbjct:   10 DRKVRRTEVKSQDIYLRLLVKLYRYLARRTNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGHEKAR 176          
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_CICAR (60S ribosomal protein L18 (Fragment) OS=Cicer arietinum GN=RPL18 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.307e-41
Identity = 91/172 (52.91%), Postives = 120/172 (69.77%), Query Frame = 2
Query:    2 DLKAGGRTKNRNIKPTRTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLKGQD-KVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAKR-REALRHFGPAPGAKGSHTAPYVRGHGKKQER 511
            DLKAGG+ K       ++ + Y  LL++LY+FL RRT+S FN  ILKRL  S+ NR P+S+SR++K ++G++ K+ V V  VT+D R+  VP + + ALKFTE AR RI  AGG+  TFDQLAL+ P   +TVLLRG K  REA++HFGPAPG   SHT PYVR  G+K E+
Sbjct:    1 DLKAGGKNKKTKRTSPKSNDIYLKLLVKLYRFLVRRTDSNFNAVILKRLFMSKVNRPPLSLSRLIKYMQGKEGKIGVVVGAVTDDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFDQLALRLPL-TDTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFEK 171          
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL181_ARATH (Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana GN=RPL18A PE=2 SV=3)

HSP 1 Score: 169.474 bits (428), Expect = 1.307e-41
Identity = 94/172 (54.65%), Postives = 120/172 (69.77%), Query Frame = 2
Query:    2 DLKAGGRTKNRNIKPTRTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLKGQD-KVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPT-GKNTVLLRGAKR-REALRHFGPAPGAKGSHTAPYVRGHGKKQE 508
            DL AGG++K       ++ + Y  LL++  ++L RRTES FN  ILKRL  S+ N+ P+S+SR+V+ + G+D K+AV V TVT+D R+  VP LT+ AL+FTE AR RI  AGG+  TFDQLAL  PT  +NTVLLRG K  REA++HFGPAPG   SHT PYVR  GKK E
Sbjct:    4 DLIAGGKSKKTKRTEPKSDDVYLKLLVKANRYLVRRTESKFNAVILKRLFMSKVNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIHKAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKKIE 175          
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18A_SCHPO (60S ribosomal protein L18-A OS=Schizosaccharomyces pombe GN=rpl18a PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.913e-41
Identity = 94/168 (55.95%), Postives = 117/168 (69.64%), Query Frame = 2
Query:   26 KNRNIKPTRTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVV-----KNLKGQDKVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAKR-REALRHFGPAPGAKGSHTAPYVRGHGKKQER 511
            K++  KP  + N Y  LL++LY+FLARRT+S FNK ILKRL QS+TNR PIS+S++      K+   Q+K  V V TVT+D R+L VPKL+I AL+FT+ AR RI+ AGG+  T DQLAL+ PTG NTVL+RG K  REA RHFG  P     H APYVR  G+K ER
Sbjct:   12 KSQRSKPA-SENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPISISKIAALTSRKSASSQNKTTVVVGTVTDDERMLTVPKLSIAALRFTKSARARILKAGGEVLTLDQLALRAPTGSNTVLVRGKKHAREAYRHFGFGP---HKHKAPYVRSEGRKFER 175          
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_SPOFR (60S ribosomal protein L18 OS=Spodoptera frugiperda GN=RpL18 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 8.475e-41
Identity = 89/167 (53.29%), Postives = 120/167 (71.86%), Query Frame = 2
Query:   29 NRNIKPT--RTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLKGQDK---VAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAKR-REALRHFGPAPGAKGSHTAPYVRGHGKKQER 511
            +R ++ T  ++ + Y  LL++LY++LARRT S FN  IL+RL  SR NR P+S+SR+ +++K   +   +AV V T+TND RL  VPK+++ AL  TEKAR RI+AAGG+  TFDQLAL+ PTG  TVLL+G +  REA+RHFGPAPGA  SHT PYVR  G ++ R
Sbjct:   10 DRKVRRTEVKSQDVYLRLLVKLYRYLARRTNSKFNTIILRRLFMSRINRPPLSLSRLARHMKKPTREGMIAVVVGTITNDVRLYKVPKMSVAALHVTEKARARILAAGGEILTFDQLALRAPTGAKTVLLQGRRNAREAVRHFGPAPGAPRSHTKPYVRTKGHERAR 176          
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_PLUXY (60S ribosomal protein L18 OS=Plutella xylostella GN=RpL18 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 8.475e-41
Identity = 86/167 (51.50%), Postives = 121/167 (72.46%), Query Frame = 2
Query:   29 NRNIKPT--RTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLKGQDK---VAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAKR-REALRHFGPAPGAKGSHTAPYVRGHGKKQER 511
            +R ++ T  ++ + Y  LL++LY++LARRT + FN+ +L+RL  SR NR P+S+SR+ +++K   +   +AV V T+TND RL  VPK+T+ AL  TEKAR RI+ AGG+  TFDQLAL+ PTG+ TVL++G +  REA+RHFGPAPGA  SHT PYVR  G +Q +
Sbjct:   10 DRKVRRTEVKSQDVYLRLLVKLYRYLARRTNAKFNQIVLRRLFMSRINRPPLSLSRLARHMKKPTREGLIAVVVGTITNDTRLYKVPKMTVAALHVTEKARARILDAGGEILTFDQLALRAPTGRKTVLIQGQRNAREAVRHFGPAPGAPRSHTKPYVRSKGHEQAK 176          
BLAST of FC871204 vs. ExPASy Swiss-Prot
Match: RL18_MOUSE (60S ribosomal protein L18 OS=Mus musculus GN=Rpl18 PE=2 SV=3)

HSP 1 Score: 166.777 bits (421), Expect = 8.475e-41
Identity = 88/168 (52.38%), Postives = 120/168 (71.43%), Query Frame = 2
Query:   26 KNRNI--KPTRTTNPYHTLLIRLYKFLARRTESAFNKTILKRLHQSRTNRYPISVSRVVKNLK---GQDKVAVCVTTVTNDARLLVVPKLTIVALKFTEKARERIVAAGGQAWTFDQLALKNPTGKNTVLLRGAKR-REALRHFGPAPGAKGSHTAPYVRGHGKKQER 511
            K+R +  K  ++ + Y  LL++LY+FLARRT S FN+ +LKRL  SRTNR P+S+SR+++ +K    ++K AV V TVT+D R+L VPKL + AL+ + +AR RI+ AGG+  TFDQLAL++P G+ TVLL G ++ RE  RHFG APG   SHT PYVR  G+K ER
Sbjct:    9 KDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTVTDDVRILEVPKLKVCALRVSSRARSRILKAGGKILTFDQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFER 176          
The following BLAST results are available for this feature:
BLAST of FC871204 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
RL18_DICDI6.270e-4458.4460S ribosomal protein L18 OS=Dictyostelium discoid... [more]
RL182_ARATH6.933e-4351.7460S ribosomal protein L18-2 OS=Arabidopsis thalian... [more]
RL183_ARATH2.634e-4251.7460S ribosomal protein L18-3 OS=Arabidopsis thalian... [more]
RL18_BOMMO7.665e-4253.8960S ribosomal protein L18 OS=Bombyx mori GN=RpL18 ... [more]
RL18_CICAR1.307e-4152.9160S ribosomal protein L18 (Fragment) OS=Cicer arie... [more]
RL181_ARATH1.307e-4154.65Putative 60S ribosomal protein L18-1 OS=Arabidopsi... [more]
RL18A_SCHPO2.913e-4155.9560S ribosomal protein L18-A OS=Schizosaccharomyces... [more]
RL18_SPOFR8.475e-4153.2960S ribosomal protein L18 OS=Spodoptera frugiperda... [more]
RL18_PLUXY8.475e-4151.5060S ribosomal protein L18 OS=Plutella xylostella G... [more]
RL18_MOUSE8.475e-4152.3860S ribosomal protein L18 OS=Mus musculus GN=Rpl18... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2AF07FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2AF07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871204 ID=FC871204; Name=FC871204; organism=Citrus sinensis; type=EST; length=634bp
CGATCTTAAAGCCGGTGGCAGAACCAAGAACAGAAACATCAAGCCCACAA
GGACCACCAATCCTTACCACACCTTATTGATCAGACTCTACAAATTCTTG
GCCAGAAGAACCGAGTCTGCCTTCAATAAGACCATCCTTAAACGTCTCCA
CCAGTCTAGAACCAACCGTTACCCCATCAGCGTGTCCCGTGTCGTTAAGA
ACCTCAAGGGACAAGACAAAGTCGCTGTTTGCGTCACCACAGTCACAAAC
GACGCTAGACTTTTGGTCGTTCCCAAGCTCACTATCGTCGCTTTAAAGTT
CACTGAGAAAGCCAGAGAAAGAATCGTGGCTGCTGGTGGACAAGCTTGGA
CTTTCGATCAGCTCGCTCTTAAGAACCCCACTGGTAAAAACACTGTACTC
TTGAGAGGAGCTAAGAGAAGAGAAGCTCTTAGACACTTCGGTCCCGCTCC
AGGTGCTAAAGGCTCTCACACTGCTCCATATGTCAGAGGACACGGCAAGA
AGCAAGAGAGAATATAATAGTTGTATTAGATACGGATGCATATTTAGTCG
AGATGTTTACATATCCATAACACTGTTGACGGACCGAACGGATTTAGTGG
CTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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