FC871161

Overview
NameFC871161
Unique NameFC871161
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC871161_ssr1 microsatellite FC871161_ssr1:1..12. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12563 contig Csv1_Contig12563:51..926. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871161 vs. ExPASy Swiss-Prot
Match: BLC_CITFR (Outer membrane lipoprotein blc OS=Citrobacter freundii PE=3 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 1.882e-14
Identity = 39/117 (33.33%), Postives = 62/117 (52.99%), Query Frame = 2
Query:  212 ATYTLNEDGTVHVRNETWSDGKR--GSIEGTAY-KADPKSDEAKLXXXXXXXXXXXXXXXXGNYWVLYIDDNYQYALIGEPTRKYLWILCREPHMDEAIYNQLVEKATSEGYDVSKL 553
            ATY+L +DG ++V N+ ++  +      EG AY   DP +   K+                G Y V+ +D  Y++AL+  P R YLWIL R P + + +  Q++  AT EG++V+KL
Sbjct:   62 ATYSLRDDGGINVINKGYNPDREMWQKTEGKAYFTGDPSTAALKVSFFGPFY---------GGYNVIALDREYRHALVCGPDRDYLWILSRTPTISDEMKQQMLAIATREGFEVNKL 169          

HSP 2 Score: 36.5798 bits (83), Expect = 1.882e-14
Identity = 16/41 (39.02%), Postives = 24/41 (58.54%), Query Frame = 3
Query:  102 KEMEVVRGLDIKRYMGRWYEIASFPSRNQPIMERIRGLLTL 224
            K + VV   D KRY+G WYEIA F  R +  ++++    +L
Sbjct:   26 KGVTVVNNFDAKRYLGTWYEIARFDHRFERGLDKVTATYSL 66          
BLAST of FC871161 vs. ExPASy Swiss-Prot
Match: BLC_ECOLI (Outer membrane lipoprotein blc OS=Escherichia coli (strain K12) GN=blc PE=1 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 1.529e-13
Identity = 38/115 (33.04%), Postives = 58/115 (50.43%), Query Frame = 2
Query:  212 ATYTLNEDGTVHVRNETWSD--GKRGSIEGTAYKADPKSDEAKLXXXXXXXXXXXXXXXXGNYWVLYIDDNYQYALIGEPTRKYLWILCREPHMDEAIYNQLVEKATSEGYDVSK 550
            ATY+L +DG ++V N+ ++   G     EG AY     +  A                  G Y V+ +D  Y++AL+  P R YLWIL R P + + +  +++  AT EG+DVSK
Sbjct:   62 ATYSLRDDGGLNVINKGYNPDRGMWQQSEGKAYFTGAPTRAA--------LKVSFFGPFYGGYNVIALDREYRHALVCGPDRDYLWILSRTPTISDEVKQEMLAVATREGFDVSK 168          

HSP 2 Score: 36.5798 bits (83), Expect = 1.529e-13
Identity = 16/37 (43.24%), Postives = 22/37 (59.46%), Query Frame = 3
Query:  114 VVRGLDIKRYMGRWYEIASFPSRNQPIMERIRGLLTL 224
            VV   D KRY+G WYEIA F  R +  +E++    +L
Sbjct:   30 VVNNFDAKRYLGTWYEIARFDHRFERGLEKVTATYSL 66          
BLAST of FC871161 vs. ExPASy Swiss-Prot
Match: BLC_ECO57 (Outer membrane lipoprotein blc OS=Escherichia coli O157:H7 GN=blc PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 1.529e-13
Identity = 38/115 (33.04%), Postives = 58/115 (50.43%), Query Frame = 2
Query:  212 ATYTLNEDGTVHVRNETWSD--GKRGSIEGTAYKADPKSDEAKLXXXXXXXXXXXXXXXXGNYWVLYIDDNYQYALIGEPTRKYLWILCREPHMDEAIYNQLVEKATSEGYDVSK 550
            ATY+L +DG ++V N+ ++   G     EG AY     +  A                  G Y V+ +D  Y++AL+  P R YLWIL R P + + +  +++  AT EG+DVSK
Sbjct:   62 ATYSLRDDGGLNVINKGYNPDRGMWQQSEGKAYFTGAPTRAA--------LKVSFFGPFYGGYNVIALDREYRHALVCGPDRDYLWILSRTPTISDEVKQEMLAVATREGFDVSK 168          

HSP 2 Score: 36.5798 bits (83), Expect = 1.529e-13
Identity = 16/37 (43.24%), Postives = 22/37 (59.46%), Query Frame = 3
Query:  114 VVRGLDIKRYMGRWYEIASFPSRNQPIMERIRGLLTL 224
            VV   D KRY+G WYEIA F  R +  +E++    +L
Sbjct:   30 VVNNFDAKRYLGTWYEIARFDHRFERGLEKVTATYSL 66          
BLAST of FC871161 vs. ExPASy Swiss-Prot
Match: YR877_MIMIV (Putative lipocalin R877 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R877 PE=1 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 2.096e-12
Identity = 39/121 (32.23%), Postives = 59/121 (48.76%), Query Frame = 2
Query:  203 DTRATYTLNEDGTVHVRNETWSDGKRGSIEGTAYKADPKSDEAKLXXXXXXXXXXXXXXXXGNYWVLYIDDNYQYALI--GEPTRKYLWILCREPHMDEAIYNQLVEKATSEGYDVSKLHR 559
            ++ A Y L E   + V N    +G+  S+ GTA  A   +                       Y V++ID+NYQYA++  G  T   LWIL R  +++++ YNQLV    ++GYDV+ L R
Sbjct:   53 NSTANYQLLEPNKIQVTNNCEINGRINSVTGTAIPA--ANTRIVSGFLTPASLMVNFGYGFSPYNVIFIDENYQYAIVSGGNDT---LWILSRFKNINQSTYNQLVTIVYNQGYDVNNLIR 168          

HSP 2 Score: 36.5798 bits (83), Expect = 2.096e-12
Identity = 16/31 (51.61%), Postives = 21/31 (67.74%), Query Frame = 3
Query:   96 SKKEMEVVRGLDIKRYMGRWYEIASFPSRNQ 188
            SK+++     LDI+RYMG WYEIA  P+  Q
Sbjct:   18 SKRDVVSQSSLDIQRYMGTWYEIARLPTSFQ 48          
The following BLAST results are available for this feature:
BLAST of FC871161 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
BLC_CITFR1.882e-1433.33Outer membrane lipoprotein blc OS=Citrobacter freu... [more]
BLC_ECOLI1.529e-1333.04Outer membrane lipoprotein blc OS=Escherichia coli... [more]
BLC_ECO571.529e-1333.04Outer membrane lipoprotein blc OS=Escherichia coli... [more]
YR877_MIMIV2.096e-1232.23Putative lipocalin R877 OS=Acanthamoeba polyphaga ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK2AD03FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2AD03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871161 ID=FC871161; Name=FC871161; organism=Citrus sinensis; type=EST; length=876bp
CAACAACAACAACAGGAGCTAGTACTCATTCTGATAAACCCAAGCTCTGT
TATTCCGAAAAGCAGATTGAAACTTTGTCAGCAAAAAAAATGGCCTCCAA
GAAAGAGATGGAAGTGGTGAGGGGTCTTGACATAAAGCGTTACATGGGGA
GATGGTATGAGATAGCTTCATTTCCATCAAGGAATCAGCCCATAATGGAG
CGGATACGAGGGCTACTTACACTTTGAATGAAGATGGGACAGTGCATGTG
CGGAATGAGACATGGAGTGATGGCAAAAGAGGGTCCATCGAAGGCACTGC
TTACAAGGCTGATCCTAAGAGCGATGAGGCCAAGCTTAAGGTCAAGTTTT
ATGTGCCTCCCTTTTTCCCCATCATTCCTGTTGTTGGCAACTACTGGGTT
TTGTATATTGATGATAATTATCAGTATGCTTTGATTGGTGAGCCTACCAG
GAAATATCTCTGGATTTTATGCAGGGAGCCTCATATGGATGAAGCGATCT
ACAATCAGCTAGTGGAGAAGGCTACAAGTGAAGGGTATGATGTGAGCAAA
CTGCACAGAACACCACAGAGTGATAACCCACCAGAGGCAGAAGAAAGCCC
CCAGGACACCAAAGGCATTTGGTGGATCAAATCCATTTTCGGGAAATAAC
CATGTAAATTAAATTAAGCATAATCTGGGATTTCACCTTTCAAGTATAAT
ATACAATAAAAGGGTTAAAACCAGAAGCTTCATAATCTTAGTAATGTAAT
CTATGTTACTTTCTTCTGCGTTTTGTGTTTTGTTTTGTAAAGAACCGTGT
GTGTTGTTGGTGTGAGGTTATTGAGCTATGAAGATTGAAATTTTTGTTTC
TTATTAAAAAAAAAAAAAAAAAAAAA
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