CX300821

Overview
NameCX300821
Unique NameCX300821
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length444
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300821 vs. ExPASy Swiss-Prot
Match: YCL3_SCHPO (UPF0652 protein C16A11.03c OS=Schizosaccharomyces pombe GN=SPCC16A11.03c PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.971e-20
Identity = 60/150 (40.00%), Postives = 84/150 (56.00%), Query Frame = 3
Query:    3 MTLSYYLHIHTPHYIFMKSLPLFLDNKYYNLFTLVPNSARGADADITNE--TYRLVDTGQGYQRLQGSPRVRREMSEILHRVQTQAG-SWVGLSVVHLGDRDVPNALIFIDKYTQVPRILAPIAQCIEQLPRLVEDSAFHSYVTAEWGSI 443
            MT +   H H   + ++    +F       +F L   S    DA + ++   Y + DTGQG  R+Q  P VR  ++ IL  VQ Q    W+G SV+HLGDRDVPNAL+FIDKY QVP ILAP+ + ++QL   + D     Y+  E+GS+
Sbjct:  261 MTGAKLNHDHKTQFFYVDQSLVFWSCMMDQMFLLWLES----DASLLDKHSRYFISDTGQGLNRVQLCPLVRSTVTRILSSVQKQQEIPWMGSSVIHLGDRDVPNALMFIDKYRQVPHILAPLVKVLQQL-EFLRDPYLVQYIENEYGSV 405          
BLAST of CX300821 vs. ExPASy Swiss-Prot
Match: YD48_SCHPO (UPF0652 protein C22H10.08 OS=Schizosaccharomyces pombe GN=SPAC22H10.08 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.737e-19
Identity = 53/141 (37.59%), Postives = 78/141 (55.32%), Query Frame = 3
Query:   24 HIHTPHYIFMK-SLPLFLDNKYYNLFTLVPNSARGADADITNET--YRLVDTGQGYQRLQGSPRVRREMSEILHRVQTQAGSWVGLSVVHLGDRDVPNALIFIDKYTQVPRILAPIAQCIEQLPRLVEDSAFHSYVTAEWG 437
            H    HY+     L L +  + ++L+ L       +D ++TN    Y+L+D  QG  R+Q  P +R  M  IL   Q Q+ +W+G S +HLGD  VPNAL+FIDKY QVPRIL P+    ++L  L  D +  +Y+   +G
Sbjct:  293 HYKQYHYVVQSLHLWLLIMGEIFSLWAL-------SDLELTNPDMEYKLIDNNQGIHRMQPCPNIRIAMERILRTAQEQSETWIGSSTIHLGDTAVPNALLFIDKYMQVPRILTPLVLLFKELDSL-NDHSLLNYIDTAFG 425          
BLAST of CX300821 vs. ExPASy Swiss-Prot
Match: U652_DICDI (UPF0652 protein OS=Dictyostelium discoideum GN=DDB_G0293552 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.471e-18
Identity = 43/83 (51.81%), Postives = 59/83 (71.08%), Query Frame = 3
Query:  153 YRLVDTGQGYQRLQGSPRVRREMSEILHRVQTQAGS-WVGLSVVHLGDRDVPNALIFIDKYTQVPRILAPIAQCIEQLPRLVE 398
            Y+L +TGQG  R+Q  P V + M  IL + Q + G  WVG SV+HLGD +VPN+L+FIDKYTQ+ RIL+PI   IE +P++ +
Sbjct:  514 YQLSNTGQGLNRIQQCPNVGKIMHSILRQTQKKVGDDWVGSSVIHLGDHNVPNSLVFIDKYTQISRILSPIVLTIEYIPKITD 596          
The following BLAST results are available for this feature:
BLAST of CX300821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
YCL3_SCHPO5.971e-2040.00UPF0652 protein C16A11.03c OS=Schizosaccharomyces ... [more]
YD48_SCHPO1.737e-1937.59UPF0652 protein C22H10.08 OS=Schizosaccharomyces p... [more]
U652_DICDI1.471e-1851.81UPF0652 protein OS=Dictyostelium discoideum GN=DDB... [more]
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Properties
Property NameValue
Genbank descriptionC08002F02SK PhyRootSw1 Citrus sinensis cDNA clone C08002F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300821 ID=CX300821; Name=CX300821; organism=Citrus sinensis; type=EST; length=444bp
TTATGACTCTGTCATACTACCTTCATATACACACTCCTCACTACATATTT
ATGAAGAGCCTTCCCTTGTTCCTTGACAATAAATATTATAATTTATTTAC
CCTCGTGCCGAATTCGGCACGAGGCGCTGATGCTGACATAACGAACGAGA
CTTATCGCCTCGTCGACACTGGTCAAGGTTACCAGCGCCTTCAAGGATCA
CCTCGCGTGAGAAGAGAAATGTCAGAGATCCTGCATCGAGTACAAACTCA
AGCAGGTAGTTGGGTAGGCTTATCTGTAGTCCATTTAGGCGATCGCGATG
TTCCTAACGCATTAATCTTTATCGACAAATACACTCAAGTCCCTAGAATC
CTTGCACCTATCGCTCAATGCATAGAGCAGCTTCCACGTCTGGTAGAAGA
TTCTGCCTTCCACTCATATGTGACAGCGGAGTGGGGTTCCATAG
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