CX300813

Overview
NameCX300813
Unique NameCX300813
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length424
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX300813 vs. ExPASy Swiss-Prot
Match: ARP5L_RAT (Actin-related protein 2/3 complex subunit 5-like protein OS=Rattus norvegicus GN=Arpc5l PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.060e-13
Identity = 43/113 (38.05%), Postives = 64/113 (56.64%), Query Frame = 3 
Query:   45 EVERLIMRKDKVNALVLSLQNTNITNASDKAKELQASLVDRVVSQLGEADIPNVVNALSLEALDLLMKYIYKFMEKTGDKNNNFAFLLKLHAAVLDKAGVGSIVRVLTERKQV 383
            EV+ L+ + D + A   +L+N+ I   +   KE    +V +V++    ++I   V +L    +DLLMKYIYK  EK  +  N+ A LL+ H   L   G+GSI+RVLT RK V
Sbjct:   43 EVDGLLRQGDMLRAFHAALRNSPINTKNQAVKERAQGIVLKVLTNFKSSEIEQAVQSLDRNGIDLLMKYIYKGFEKPTE--NSSAVLLQWHEKALAVGGLGSIIRVLTARKTV 153
[Close]
BLAST of CX300813 vs. ExPASy Swiss-Prot
Match: ARPC5_RAT (Actin-related protein 2/3 complex subunit 5 OS=Rattus norvegicus GN=Arpc5 PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 7.915e-13
Identity = 46/113 (40.71%), Postives = 60/113 (53.10%), Query Frame = 3 
Query:   45 EVERLIMRKDKVNALVLSLQNTNITNASDKAKELQASLVDRVVSQLGEADIPNVVNALSLEALDLLMKYIYKFMEKTGDKNNNFAFLLKLHAAVLDKAGVGSIVRVLTERKQV 383
            EV+  + + +   AL  +L+N  I   S   K+   S+V +V+      DI   V +L    +DLLMKYIYK  E   D  N+ A LL+ H   L   GVGSIVRVLT RK V
Sbjct:   41 EVDSCLRQGNMTAALQAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPSD--NSSAMLLQWHEKALAAGGVGSIVRVLTARKTV 151
[Close]
BLAST of CX300813 vs. ExPASy Swiss-Prot
Match: ARPC5_PONAB (Actin-related protein 2/3 complex subunit 5 OS=Pongo abelii GN=ARPC5 PE=2 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 7.915e-13
Identity = 46/113 (40.71%), Postives = 60/113 (53.10%), Query Frame = 3 
Query:   45 EVERLIMRKDKVNALVLSLQNTNITNASDKAKELQASLVDRVVSQLGEADIPNVVNALSLEALDLLMKYIYKFMEKTGDKNNNFAFLLKLHAAVLDKAGVGSIVRVLTERKQV 383
            EV+  + + +   AL  +L+N  I   S   K+   S+V +V+      DI   V +L    +DLLMKYIYK  E   D  N+ A LL+ H   L   GVGSIVRVLT RK V
Sbjct:   41 EVDSCLRQGNMTAALQAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPSD--NSSAMLLQWHEKALAAGGVGSIVRVLTARKTV 151
[Close]
BLAST of CX300813 vs. ExPASy Swiss-Prot
Match: ARPC5_HUMAN (Actin-related protein 2/3 complex subunit 5 OS=Homo sapiens GN=ARPC5 PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 7.915e-13
Identity = 46/113 (40.71%), Postives = 60/113 (53.10%), Query Frame = 3 
Query:   45 EVERLIMRKDKVNALVLSLQNTNITNASDKAKELQASLVDRVVSQLGEADIPNVVNALSLEALDLLMKYIYKFMEKTGDKNNNFAFLLKLHAAVLDKAGVGSIVRVLTERKQV 383
            EV+  + + +   AL  +L+N  I   S   K+   S+V +V+      DI   V +L    +DLLMKYIYK  E   D  N+ A LL+ H   L   GVGSIVRVLT RK V
Sbjct:   41 EVDSCLRQGNMTAALQAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPSD--NSSAMLLQWHEKALAAGGVGSIVRVLTARKTV 151
[Close]
BLAST of CX300813 vs. ExPASy Swiss-Prot
Match: ARP5L_MOUSE (Actin-related protein 2/3 complex subunit 5-like protein OS=Mus musculus GN=Arpc5l PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.915e-13
Identity = 43/113 (38.05%), Postives = 64/113 (56.64%), Query Frame = 3 
Query:   45 EVERLIMRKDKVNALVLSLQNTNITNASDKAKELQASLVDRVVSQLGEADIPNVVNALSLEALDLLMKYIYKFMEKTGDKNNNFAFLLKLHAAVLDKAGVGSIVRVLTERKQV 383
            EV+ L+ + D + A   +L+N+ I   +   KE    +V +V++    ++I   V +L    +DLLMKYIYK  EK  +  N+ A LL+ H   L   G+GSI+RVLT RK V
Sbjct:   43 EVDGLLRQGDMLRAFHAALRNSPINTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGIDLLMKYIYKGFEKPTE--NSSAVLLQWHEKALAVGGLGSIIRVLTARKTV 153
[Close]
BLAST of CX300813 vs. ExPASy Swiss-Prot
Match: ARPC5_MOUSE (Actin-related protein 2/3 complex subunit 5 OS=Mus musculus GN=Arpc5 PE=2 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 1.034e-12
Identity = 46/113 (40.71%), Postives = 60/113 (53.10%), Query Frame = 3 
Query:   45 EVERLIMRKDKVNALVLSLQNTNITNASDKAKELQASLVDRVVSQLGEADIPNVVNALSLEALDLLMKYIYKFMEKTGDKNNNFAFLLKLHAAVLDKAGVGSIVRVLTERKQV 383
            EV+  + + +   AL  +L+N  I   S   K+   S+V +V+      DI   V +L    +DLLMKYIYK  E   D  N+ A LL+ H   L   GVGSIVRVLT RK V
Sbjct:   41 EVDSCLRQGNMTAALQAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPSD--NSSAVLLQWHEKALAAGGVGSIVRVLTARKTV 151
[Close]
BLAST of CX300813 vs. ExPASy Swiss-Prot
Match: ARPC5_BOVIN (Actin-related protein 2/3 complex subunit 5 OS=Bos taurus GN=ARPC5 PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 1.034e-12
Identity = 46/113 (40.71%), Postives = 60/113 (53.10%), Query Frame = 3 
Query:   45 EVERLIMRKDKVNALVLSLQNTNITNASDKAKELQASLVDRVVSQLGEADIPNVVNALSLEALDLLMKYIYKFMEKTGDKNNNFAFLLKLHAAVLDKAGVGSIVRVLTERKQV 383
            EV+  + + +   AL  +L+N  I   S   K+   S+V +V+      DI   V +L    +DLLMKYIYK  E   D  N+ A LL+ H   L   GVGSIVRVLT RK V
Sbjct:   41 EVDSCLRQGNMTAALQAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPSD--NSSAVLLQWHEKALAAGGVGSIVRVLTARKTV 151
[Close]
BLAST of CX300813 vs. ExPASy Swiss-Prot
Match: ARP5L_BOVIN (Actin-related protein 2/3 complex subunit 5-like protein OS=Bos taurus GN=ARPC5L PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.034e-12
Identity = 42/113 (37.17%), Postives = 64/113 (56.64%), Query Frame = 3 
Query:   45 EVERLIMRKDKVNALVLSLQNTNITNASDKAKELQASLVDRVVSQLGEADIPNVVNALSLEALDLLMKYIYKFMEKTGDKNNNFAFLLKLHAAVLDKAGVGSIVRVLTERKQV 383
            EV+ L+ + D + A   +L+N+ +   +   KE    +V +V++    ++I   V +L    +DLLMKYIYK  EK  +  N+ A LL+ H   L   G+GSI+RVLT RK V
Sbjct:   43 EVDGLLRQGDMLRAFHAALRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGIDLLMKYIYKGFEKPTE--NSSAVLLQWHEKALAVGGLGSIIRVLTARKTV 153
[Close]
BLAST of CX300813 vs. ExPASy Swiss-Prot
Match: ARP5L_PONAB (Actin-related protein 2/3 complex subunit 5-like protein OS=Pongo abelii GN=ARPC5L PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.350e-12
Identity = 42/113 (37.17%), Postives = 64/113 (56.64%), Query Frame = 3 
Query:   45 EVERLIMRKDKVNALVLSLQNTNITNASDKAKELQASLVDRVVSQLGEADIPNVVNALSLEALDLLMKYIYKFMEKTGDKNNNFAFLLKLHAAVLDKAGVGSIVRVLTERKQV 383
            EV+ L+ + D + A   +L+N+ +   +   KE    +V +V++    ++I   V +L    +DLLMKYIYK  EK  +  N+ A LL+ H   L   G+GSI+RVLT RK V
Sbjct:   43 EVDGLLRQGDMLRAFHAALRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGVDLLMKYIYKGFEKPTE--NSSAVLLQWHEKALAVGGLGSIIRVLTARKTV 153
[Close]
BLAST of CX300813 vs. ExPASy Swiss-Prot
Match: ARP5L_HUMAN (Actin-related protein 2/3 complex subunit 5-like protein OS=Homo sapiens GN=ARPC5L PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.350e-12
Identity = 42/113 (37.17%), Postives = 64/113 (56.64%), Query Frame = 3 
Query:   45 EVERLIMRKDKVNALVLSLQNTNITNASDKAKELQASLVDRVVSQLGEADIPNVVNALSLEALDLLMKYIYKFMEKTGDKNNNFAFLLKLHAAVLDKAGVGSIVRVLTERKQV 383
            EV+ L+ + D + A   +L+N+ +   +   KE    +V +V++    ++I   V +L    +DLLMKYIYK  EK  +  N+ A LL+ H   L   G+GSI+RVLT RK V
Sbjct:   43 EVDGLLRQGDMLRAFHAALRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGVDLLMKYIYKGFEKPTE--NSSAVLLQWHEKALAVGGLGSIIRVLTARKTV 153
The following BLAST results are available for this feature:
BLAST of CX300813 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
ARP5L_RAT6.060e-1338.05Actin-related protein 2/3 complex subunit 5-like p... [more]
ARPC5_RAT7.915e-1340.71Actin-related protein 2/3 complex subunit 5 OS=Rat... [more]
ARPC5_PONAB7.915e-1340.71Actin-related protein 2/3 complex subunit 5 OS=Pon... [more]
ARPC5_HUMAN7.915e-1340.71Actin-related protein 2/3 complex subunit 5 OS=Hom... [more]
ARP5L_MOUSE7.915e-1338.05Actin-related protein 2/3 complex subunit 5-like p... [more]
ARPC5_MOUSE1.034e-1240.71Actin-related protein 2/3 complex subunit 5 OS=Mus... [more]
ARPC5_BOVIN1.034e-1240.71Actin-related protein 2/3 complex subunit 5 OS=Bos... [more]
ARP5L_BOVIN1.034e-1237.17Actin-related protein 2/3 complex subunit 5-like p... [more]
ARP5L_PONAB1.350e-1237.17Actin-related protein 2/3 complex subunit 5-like p... [more]
ARP5L_HUMAN1.350e-1237.17Actin-related protein 2/3 complex subunit 5-like p... [more]
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Properties
Property NameValue
Genbank descriptionC08002E06SK PhyRootSw1 Citrus sinensis cDNA clone C08002E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300813 ID=CX300813; Name=CX300813; organism=Citrus sinensis; type=EST; length=424bp
AGAAAACAATGTCAGACGAAGCAGAAGTCCAACAACGAACACCGGAAGTT
GAGCGACTAATTATGCGAAAGGATAAAGTGAATGCTTTAGTCCTCTCACT
TCAAAATACTAACATCACCAATGCCTCTGATAAGGCAAAGGAATTACAAG
CATCTTTAGTAGATAGAGTTGTCAGCCAATTAGGTGAAGCCGATATCCCA
AATGTTGTCAATGCTTTAAGTCTTGAAGCATTGGATCTATTAATGAAATA
TATTTATAAGTTTATGGAGAAAACTGGCGATAAAAATAATAACTTCGCAT
TCTTACTAAAGCTACATGCTGCAGTCTTAGATAAAGCTGGTGTAGGATCA
ATTGTTAGAGTATTAACTGAGCGTAAACAAGTGTAACATAATTTAACATA
GCTTTTCAAAAAAAAAAAAAAAAA
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