CX300809

Overview
NameCX300809
Unique NameCX300809
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length420
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300809 vs. ExPASy Swiss-Prot
Match: RL101_ORYSJ (60S ribosomal protein L10-1 OS=Oryza sativa subsp. japonica GN=SC34 PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 9.541e-59
Identity = 106/139 (76.26%), Postives = 122/139 (87.77%), Query Frame = 1
Query:    1 PACVHLVSLEKEQLSSEALEASRISCNKYIVKFAGKDVFHMRVRVHPYHVLRINKMLSCAGADRVQSGMRGAFGKPQGLVARVNIGQILLSVRCKQSAVPHVTEALRRAKYKFPGRQKIVISKNWGFTKFLKEDYQKLK 417
            P CVHLVS EKE +SSEALEA+RI+CNKY+ K AGKD FH+RVRVHP+HVLRINKMLSCAGADR+Q+GMRGAFGKPQG  ARV+IGQ+LLSVRCK+S   H  EALRRAK+KFPGRQKI+ S+ WGFTKF +E+Y KLK
Sbjct:   47 PYCVHLVSWEKENVSSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTKFTREEYVKLK 185          
BLAST of CX300809 vs. ExPASy Swiss-Prot
Match: RL101_ORYSI (60S ribosomal protein L10-1 OS=Oryza sativa subsp. indica GN=SC34 PE=2 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 9.541e-59
Identity = 106/139 (76.26%), Postives = 122/139 (87.77%), Query Frame = 1
Query:    1 PACVHLVSLEKEQLSSEALEASRISCNKYIVKFAGKDVFHMRVRVHPYHVLRINKMLSCAGADRVQSGMRGAFGKPQGLVARVNIGQILLSVRCKQSAVPHVTEALRRAKYKFPGRQKIVISKNWGFTKFLKEDYQKLK 417
            P CVHLVS EKE +SSEALEA+RI+CNKY+ K AGKD FH+RVRVHP+HVLRINKMLSCAGADR+Q+GMRGAFGKPQG  ARV+IGQ+LLSVRCK+S   H  EALRRAK+KFPGRQKI+ S+ WGFTKF +E+Y KLK
Sbjct:   47 PYCVHLVSWEKENVSSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTKFTREEYVKLK 185          
BLAST of CX300809 vs. ExPASy Swiss-Prot
Match: RL10_DICDI (60S ribosomal protein L10 OS=Dictyostelium discoideum GN=rpl10 PE=3 SV=2)

HSP 1 Score: 221.476 bits (563), Expect = 1.055e-57
Identity = 105/139 (75.54%), Postives = 120/139 (86.33%), Query Frame = 1
Query:    1 PACVHLVSLEKEQLSSEALEASRISCNKYIVKFAGKDVFHMRVRVHPYHVLRINKMLSCAGADRVQSGMRGAFGKPQGLVARVNIGQILLSVRCKQSAVPHVTEALRRAKYKFPGRQKIVISKNWGFTKFLKEDYQKLK 417
            P CVHL+SLEKEQLSSEA+EA RISCNKYI K  GKD FHMRVRVHP+HVLRINKMLSCAGADR+Q+GMRGAFGKP G VARVNIGQI+ S+R + + + +V EALRR+ YKFPGRQKIV+SK WGFT + +E YQKLK
Sbjct:   47 PLCVHLISLEKEQLSSEAIEAGRISCNKYISKTGGKDSFHMRVRVHPWHVLRINKMLSCAGADRLQTGMRGAFGKPMGTVARVNIGQIIFSIRTRDNMLANVVEALRRSSYKFPGRQKIVVSKKWGFTAYNREAYQKLK 185          
BLAST of CX300809 vs. ExPASy Swiss-Prot
Match: RL10_SOLME (60S ribosomal protein L10 OS=Solanum melongena GN=RPL10 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 1.799e-57
Identity = 104/139 (74.82%), Postives = 119/139 (85.61%), Query Frame = 1
Query:    1 PACVHLVSLEKEQLSSEALEASRISCNKYIVKFAGKDVFHMRVRVHPYHVLRINKMLSCAGADRVQSGMRGAFGKPQGLVARVNIGQILLSVRCKQSAVPHVTEALRRAKYKFPGRQKIVISKNWGFTKFLKEDYQKLK 417
            P CVHLVS EKE +SSEALEA+RI+CNKY+ K AGKD FH+RVRVHP+HVLRINKMLSCAGADR+Q+GMRGAFGKPQG+ ARV IGQ+LLSVRCK     H  EALRRAK+KFPGRQKI++S+ WGFTKF + DY K K
Sbjct:   47 PFCVHLVSWEKENVSSEALEAARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDGNSNHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRTDYLKYK 185          
BLAST of CX300809 vs. ExPASy Swiss-Prot
Match: RL10_EUPES (60S ribosomal protein L10 OS=Euphorbia esula GN=RPL10 PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 3.069e-57
Identity = 103/139 (74.10%), Postives = 121/139 (87.05%), Query Frame = 1
Query:    1 PACVHLVSLEKEQLSSEALEASRISCNKYIVKFAGKDVFHMRVRVHPYHVLRINKMLSCAGADRVQSGMRGAFGKPQGLVARVNIGQILLSVRCKQSAVPHVTEALRRAKYKFPGRQKIVISKNWGFTKFLKEDYQKLK 417
            P CVHLVS EKE +SSEALEA+RI+CNKY+ KFAGKD FH+RVRVHP+HVLRINKMLSCAGADR+Q+GMRGAFGKPQG+ ARV IGQ+LLSVRCK +   +  EALRRAK+KFPGRQKI++S+ WGFTK  + DY +LK
Sbjct:   47 PFCVHLVSWEKENVSSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDNNSHNAQEALRRAKFKFPGRQKIIVSRKWGFTKINRADYPRLK 185          
BLAST of CX300809 vs. ExPASy Swiss-Prot
Match: RL10_VITRI (60S ribosomal protein L10 OS=Vitis riparia GN=RPL10 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 4.009e-57
Identity = 103/139 (74.10%), Postives = 119/139 (85.61%), Query Frame = 1
Query:    1 PACVHLVSLEKEQLSSEALEASRISCNKYIVKFAGKDVFHMRVRVHPYHVLRINKMLSCAGADRVQSGMRGAFGKPQGLVARVNIGQILLSVRCKQSAVPHVTEALRRAKYKFPGRQKIVISKNWGFTKFLKEDYQKLK 417
            P CVHLVS EKE +SSEALEA+RI+CNKY+ K+AGKD FH+RVRVHP+HVLRINKMLSCAGADR+Q+GMRGAFGKPQG  ARV+IGQ+LLSVRCK     H  EALRRAK+KFP RQKI++S+ WGFTKF + DY K K
Sbjct:   47 PFCVHLVSWEKENVSSEALEAARIACNKYMTKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVSIGQVLLSVRCKDGNSHHAQEALRRAKFKFPARQKIIVSRKWGFTKFNRTDYIKWK 185          
BLAST of CX300809 vs. ExPASy Swiss-Prot
Match: RL102_ORYSJ (60S ribosomal protein L10-2 OS=Oryza sativa subsp. japonica GN=SG12 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 1.523e-56
Identity = 101/137 (73.72%), Postives = 121/137 (88.32%), Query Frame = 1
Query:    7 CVHLVSLEKEQLSSEALEASRISCNKYIVKFAGKDVFHMRVRVHPYHVLRINKMLSCAGADRVQSGMRGAFGKPQGLVARVNIGQILLSVRCKQSAVPHVTEALRRAKYKFPGRQKIVISKNWGFTKFLKEDYQKLK 417
            CVHLVS EKE ++SEALEA+RI+CNKY+ K AGKD FH+RVRVHP+HVLRINKMLSCAGADR+Q+GMRGAFGKPQG  ARV+IGQ+LLSVRCK +   H +EALRRAK+KFPGRQKI+ S+ WGFTKF +++Y +LK
Sbjct:   49 CVHLVSWEKENVTSEALEAARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKPNNAVHASEALRRAKFKFPGRQKIIESRKWGFTKFSRDEYVRLK 185          
BLAST of CX300809 vs. ExPASy Swiss-Prot
Match: RL102_ORYSI (60S ribosomal protein L10-2 OS=Oryza sativa subsp. indica GN=SG12 PE=2 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 1.523e-56
Identity = 101/137 (73.72%), Postives = 121/137 (88.32%), Query Frame = 1
Query:    7 CVHLVSLEKEQLSSEALEASRISCNKYIVKFAGKDVFHMRVRVHPYHVLRINKMLSCAGADRVQSGMRGAFGKPQGLVARVNIGQILLSVRCKQSAVPHVTEALRRAKYKFPGRQKIVISKNWGFTKFLKEDYQKLK 417
            CVHLVS EKE ++SEALEA+RI+CNKY+ K AGKD FH+RVRVHP+HVLRINKMLSCAGADR+Q+GMRGAFGKPQG  ARV+IGQ+LLSVRCK +   H +EALRRAK+KFPGRQKI+ S+ WGFTKF +++Y +LK
Sbjct:   49 CVHLVSWEKENVTSEALEAARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKPNNAVHASEALRRAKFKFPGRQKIIESRKWGFTKFSRDEYVRLK 185          
BLAST of CX300809 vs. ExPASy Swiss-Prot
Match: RL10_MAIZE (60S ribosomal protein L10 OS=Zea mays GN=RPL10 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 3.393e-56
Identity = 102/139 (73.38%), Postives = 118/139 (84.89%), Query Frame = 1
Query:    1 PACVHLVSLEKEQLSSEALEASRISCNKYIVKFAGKDVFHMRVRVHPYHVLRINKMLSCAGADRVQSGMRGAFGKPQGLVARVNIGQILLSVRCKQSAVPHVTEALRRAKYKFPGRQKIVISKNWGFTKFLKEDYQKLK 417
            P CVHLVS E+E +SSEALEA+RI CNKY+ K AGKD FH+RVRVHP+HVLRINKMLSCAGADR+Q+GMRGAFGKPQG  ARV+IGQ+LLSVRCK +   H +EALRRAK+KFP RQKI+ S+ WGFTKF + DY K K
Sbjct:   47 PYCVHLVSWERENVSSEALEAARIVCNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKDNNAAHASEALRRAKFKFPARQKIIESRKWGFTKFSRADYLKYK 185          
BLAST of CX300809 vs. ExPASy Swiss-Prot
Match: RL102_ARATH (60S ribosomal protein L10-2 OS=Arabidopsis thaliana GN=RPL10B PE=2 SV=2)

HSP 1 Score: 216.083 bits (549), Expect = 4.432e-56
Identity = 102/139 (73.38%), Postives = 119/139 (85.61%), Query Frame = 1
Query:    1 PACVHLVSLEKEQLSSEALEASRISCNKYIVKFAGKDVFHMRVRVHPYHVLRINKMLSCAGADRVQSGMRGAFGKPQGLVARVNIGQILLSVRCKQSAVPHVTEALRRAKYKFPGRQKIVISKNWGFTKFLKEDYQKLK 417
            P CVHLVS EKE +SSEALEA+RI+CNKY+VK AGKD FH+R+RVHP+HVLRINKMLSCAGADR+Q+GMRGAFGK  G  ARV IGQ+LLSVRCK +   H  EALRRAK+KFPGRQKI++S+ WGFTKF + DY KL+
Sbjct:   47 PYCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADYTKLR 185          
The following BLAST results are available for this feature:
BLAST of CX300809 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL101_ORYSJ9.541e-5976.2660S ribosomal protein L10-1 OS=Oryza sativa subsp.... [more]
RL101_ORYSI9.541e-5976.2660S ribosomal protein L10-1 OS=Oryza sativa subsp.... [more]
RL10_DICDI1.055e-5775.5460S ribosomal protein L10 OS=Dictyostelium discoid... [more]
RL10_SOLME1.799e-5774.8260S ribosomal protein L10 OS=Solanum melongena GN=... [more]
RL10_EUPES3.069e-5774.1060S ribosomal protein L10 OS=Euphorbia esula GN=RP... [more]
RL10_VITRI4.009e-5774.1060S ribosomal protein L10 OS=Vitis riparia GN=RPL1... [more]
RL102_ORYSJ1.523e-5673.7260S ribosomal protein L10-2 OS=Oryza sativa subsp.... [more]
RL102_ORYSI1.523e-5673.7260S ribosomal protein L10-2 OS=Oryza sativa subsp.... [more]
RL10_MAIZE3.393e-5673.3860S ribosomal protein L10 OS=Zea mays GN=RPL10 PE=... [more]
RL102_ARATH4.432e-5673.3860S ribosomal protein L10-2 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionC08002E02SK PhyRootSw1 Citrus sinensis cDNA clone C08002E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300809 ID=CX300809; Name=CX300809; organism=Citrus sinensis; type=EST; length=420bp
CCCGCTTGCGTTCACTTAGTATCCTTGGAAAAAGAACAACTTTCCTCTGA
AGCTCTTGAAGCTTCTCGAATTTCTTGCAACAAGTACATCGTTAAATTTG
CCGGAAAAGACGTGTTCCACATGAGAGTCAGAGTTCACCCTTATCACGTT
TTACGTATCAACAAAATGTTATCTTGCGCAGGAGCTGATAGAGTCCAATC
TGGAATGAGAGGTGCCTTCGGAAAACCTCAAGGTCTCGTTGCTCGAGTTA
ATATTGGTCAAATTTTATTATCTGTTAGATGCAAACAATCTGCTGTTCCC
CATGTTACTGAAGCTTTACGACGAGCGAAATACAAGTTCCCTGGACGACA
AAAGATTGTCATCTCCAAGAACTGGGGCTTCACTAAATTCTTAAAGGAAG
ATTACCAAAAGTTAAAGGAC
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