CX300806

Overview
NameCX300806
Unique NameCX300806
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length418
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL18_SPOFR (60S ribosomal protein L18 OS=Spodoptera frugiperda GN=RpL18 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 4.777e-42
Identity = 83/139 (59.71%), Postives = 112/139 (80.58%), Query Frame = 2
Query:    5 MGIDLDHKHKKNKNRIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKISSYLKGKD-DKKIAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPTGANTVLL 418
            MGID++HKH +   R + KSQD Y+RLLV+LY++L+RRT+S FN ++L+RL MSR+NRPPLS+S+++ ++K    +  IAV+VGT+TND RL +VPK+++AAL VTE ARARI+ AGG I+T DQLAL  PTGA TVLL
Sbjct:    1 MGIDINHKHDRKVRRTEVKSQDVYLRLLVKLYRYLARRTNSKFNTIILRRLFMSRINRPPLSLSRLARHMKKPTREGMIAVVVGTITNDVRLYKVPKMSVAALHVTEKARARILAAGGEILTFDQLALRAPTGAKTVLL 139          
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL18_PLUXY (60S ribosomal protein L18 OS=Plutella xylostella GN=RpL18 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 4.044e-41
Identity = 81/139 (58.27%), Postives = 111/139 (79.86%), Query Frame = 2
Query:    5 MGIDLDHKHKKNKNRIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKISSYLKGKD-DKKIAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPTGANTVLL 418
            MGID++HKH +   R + KSQD Y+RLLV+LY++L+RRT++ FN++VL+RL MSR+NRPPLS+S+++ ++K    +  IAV+VGT+TND RL +VPK+ +AAL VTE ARARI+ AGG I+T DQLAL  PTG  TVL+
Sbjct:    1 MGIDINHKHDRKVRRTEVKSQDVYLRLLVKLYRYLARRTNAKFNQIVLRRLFMSRINRPPLSLSRLARHMKKPTREGLIAVVVGTITNDTRLYKVPKMTVAALHVTEKARARILDAGGEILTFDQLALRAPTGRKTVLI 139          
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL18_DROME (60S ribosomal protein L18 OS=Drosophila melanogaster GN=RpL18 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 4.044e-41
Identity = 80/139 (57.55%), Postives = 108/139 (77.70%), Query Frame = 2
Query:    5 MGIDLDHKHKKNKNRIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKISSYLKGKDD-KKIAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPTGANTVLL 418
            MGID++HK+ +   R +PKSQD Y+RLLV+LY+FL RRT+  FNR++LKRL MS++NRPPLS+ +I+ + K  +  +   V+VGTVT+D RLL VPKL + AL VT++AR RI+KAGG ++T DQLAL  PTG NT+LL
Sbjct:    1 MGIDINHKYDRKVRRTEPKSQDVYLRLLVKLYRFLQRRTNKKFNRIILKRLFMSKINRPPLSLQRIARFFKAANQPESTIVVVGTVTDDARLLVVPKLTVCALHVTQTARERILKAGGEVLTFDQLALRSPTGKNTLLL 139          
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL18_TIMBA (60S ribosomal protein L18 OS=Timarcha balearica GN=RpL18 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.176e-40
Identity = 80/140 (57.14%), Postives = 114/140 (81.43%), Query Frame = 2
Query:    5 MGIDLDHKHKKNKNRIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKISSYLKGKDDKKI--AVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPTGANTVLL 418
            MGID++HK+ +   R +PKSQD Y+RLLV+LY++L+RRT + FN+++LKRL MS++ RPP+S+SK+  ++K K  +++  AVIVGTVT+D R+ E+PKL+I AL+VT++ARA I+KAGG +IT DQLAL  PTG+ TVLL
Sbjct:    1 MGIDINHKYDRKVRRTEPKSQDVYLRLLVKLYRYLARRTGAKFNKIILKRLFMSKIYRPPISLSKVVRFMK-KPGRELLTAVIVGTVTDDSRIFEIPKLSICALRVTQTARAGILKAGGEVITFDQLALRSPTGSKTVLL 139          
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL18_DROPS (60S ribosomal protein L18 OS=Drosophila pseudoobscura pseudoobscura GN=RpL18 PE=3 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 1.176e-40
Identity = 79/138 (57.25%), Postives = 107/138 (77.54%), Query Frame = 2
Query:    8 GIDLDHKHKKNKNRIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKISSYLKGKDD-KKIAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPTGANTVLL 418
            GID++HK+ +   R +PKSQD Y+RLLV+LY+FL RRT+  FNR++LKRL MS++NRPPLS+ +I+ + K  +  +   V+VGTVT+D RLL VPKL + AL VT++AR RI+KAGG ++T DQLAL  PTG NT+LL
Sbjct:    3 GIDINHKYDRKVRRTEPKSQDVYLRLLVKLYRFLQRRTNKKFNRIILKRLFMSKINRPPLSLQRIARFFKAANQPESTVVVVGTVTDDARLLVVPKLTLCALHVTQTARERILKAGGEVLTFDQLALKSPTGKNTLLL 140          
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL18_BOMMO (60S ribosomal protein L18 OS=Bombyx mori GN=RpL18 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.176e-40
Identity = 80/139 (57.55%), Postives = 111/139 (79.86%), Query Frame = 2
Query:    5 MGIDLDHKHKKNKNRIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKISSYLKGKD-DKKIAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPTGANTVLL 418
            MGID++HKH +   R + KSQD Y+RLLV+LY++L+RRT++ FN++VL+RL MSR+NRPP+S+S+++ ++K    +  IAV+VGTVTND RL ++PK+ +AAL VTE ARARI+ AGG I+T DQLAL  PTG  TVL+
Sbjct:    1 MGIDINHKHDRKVRRTEVKSQDIYLRLLVKLYRYLARRTNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLV 139          
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL18_AEDAE (60S ribosomal protein L18 OS=Aedes aegypti GN=RpL18 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.537e-40
Identity = 81/140 (57.86%), Postives = 106/140 (75.71%), Query Frame = 2
Query:    5 MGIDLDHKHKKNKNRIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKISSYLK--GKDDKKIAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPTGANTVLL 418
            MGID++HK  +   R  PKS D Y+RLLV+LY+FL RRT   FN+++L+RL MSR N+PP+S+S+++  +K  GKD+  IAV+VGTVTND+R L  PK+N+ AL+VTE AR RI+K GG I T DQLAL  PTG NTVL+
Sbjct:    1 MGIDINHKWDRKVRRTKPKSLDVYLRLLVKLYRFLYRRTHKKFNKIILRRLFMSRTNQPPISLSRVAKLMKLRGKDENTIAVVVGTVTNDDRKLYCPKMNVCALRVTEKARERILKWGGKIYTFDQLALVAPTGKNTVLM 140          
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL18B_SCHPO (60S ribosomal protein L18-B OS=Schizosaccharomyces pombe GN=rpl18b PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.537e-40
Identity = 83/141 (58.87%), Postives = 109/141 (77.30%), Query Frame = 2
Query:    5 MGIDLDHKHKKNKNRIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKISSYLKGKD---DKKIAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPTGANTVLL 418
            MGID++  H +   R  P S++ Y++LLV+LY+FL+RRT S FN+ +LKRL  S+ NRPP+SISKI++    K    + K  VIVGTVT+DERLL VPKL++AAL+ T+SARARI+KAGG ++TLDQLAL  PTG+NTVLL
Sbjct:    1 MGIDIERHHVRKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPISISKIAALTSRKSASLEGKTTVIVGTVTDDERLLTVPKLSVAALRFTKSARARILKAGGEVLTLDQLALRAPTGSNTVLL 141          
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL18_ANOGA (60S ribosomal protein L18 OS=Anopheles gambiae GN=RpL18 PE=3 SV=3)

HSP 1 Score: 164.081 bits (414), Expect = 2.007e-40
Identity = 78/140 (55.71%), Postives = 107/140 (76.43%), Query Frame = 2
Query:    5 MGIDLDHKHKKNKNRIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKISSYLK--GKDDKKIAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPTGANTVLL 418
            MGID++HK  +   R  PKS D Y+ LLV+LY+FL RRT   FN++V++RL MSR N PP+S+++++  +K  GKD+K +AV++GTVTND R+++VPKLN+ AL+VT+ AR RI+K GG I T DQLAL  PTG NTVL+
Sbjct:    1 MGIDINHKWDRKVRRTRPKSLDVYLSLLVKLYRFLYRRTKKKFNKIVMRRLFMSRTNHPPMSLNRVAHLMKLRGKDEKSVAVVIGTVTNDVRMMDVPKLNVCALRVTDKARQRILKNGGKIYTFDQLALLSPTGRNTVLM 140          
BLAST of CX300806 vs. ExPASy Swiss-Prot
Match: RL18A_SCHPO (60S ribosomal protein L18-A OS=Schizosaccharomyces pombe GN=rpl18a PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.621e-40
Identity = 82/141 (58.16%), Postives = 108/141 (76.60%), Query Frame = 2
Query:    5 MGIDLDHKHKKNKNRIDPKSQDPYVRLLVRLYKFLSRRTSSNFNRVVLKRLTMSRLNRPPLSISKISSYLKGKD---DKKIAVIVGTVTNDERLLEVPKLNIAALKVTESARARIVKAGGSIITLDQLALSRPTGANTVLL 418
            MGID++  H K   R  P S++ Y++LLV+LY+FL+RRT S FN+ +LKRL  S+ NRPP+SISKI++    K      K  V+VGTVT+DER+L VPKL+IAAL+ T+SARARI+KAGG ++TLDQLAL  PTG+NTVL+
Sbjct:    1 MGIDIERHHVKKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPISISKIAALTSRKSASSQNKTTVVVGTVTDDERMLTVPKLSIAALRFTKSARARILKAGGEVLTLDQLALRAPTGSNTVLV 141          
The following BLAST results are available for this feature:
BLAST of CX300806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
RL18_SPOFR4.777e-4259.7160S ribosomal protein L18 OS=Spodoptera frugiperda... [more]
RL18_PLUXY4.044e-4158.2760S ribosomal protein L18 OS=Plutella xylostella G... [more]
RL18_DROME4.044e-4157.5560S ribosomal protein L18 OS=Drosophila melanogast... [more]
RL18_TIMBA1.176e-4057.1460S ribosomal protein L18 OS=Timarcha balearica GN... [more]
RL18_DROPS1.176e-4057.2560S ribosomal protein L18 OS=Drosophila pseudoobsc... [more]
RL18_BOMMO1.176e-4057.5560S ribosomal protein L18 OS=Bombyx mori GN=RpL18 ... [more]
RL18_AEDAE1.537e-4057.8660S ribosomal protein L18 OS=Aedes aegypti GN=RpL1... [more]
RL18B_SCHPO1.537e-4058.8760S ribosomal protein L18-B OS=Schizosaccharomyces... [more]
RL18_ANOGA2.007e-4055.7160S ribosomal protein L18 OS=Anopheles gambiae GN=... [more]
RL18A_SCHPO2.621e-4058.1660S ribosomal protein L18-A OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionC08002D11SK PhyRootSw1 Citrus sinensis cDNA clone C08002D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300806 ID=CX300806; Name=CX300806; organism=Citrus sinensis; type=EST; length=418bp
AATCATGGGTATCGATTTAGATCATAAGCACAAAAAAAACAAGAATAGAA
TTGACCCCAAGAGCCAAGACCCTTATGTCAGACTCTTAGTTAGATTGTAC
AAATTCTTGAGCCGAAGAACCAGCTCCAATTTCAACAGAGTTGTCTTAAA
ACGTCTTACCATGAGCAGACTTAACCGACCTCCTTTATCTATTTCTAAAA
TATCAAGTTATTTGAAAGGAAAAGATGACAAAAAAATCGCCGTTATTGTC
GGAACTGTTACTAATGATGAAAGACTTCTCGAAGTTCCCAAGTTAAATAT
TGCTGCTTTGAAAGTAACTGAATCTGCTAGAGCCAGAATTGTTAAAGCCG
GAGGTTCCATTATTACCCTCGATCAATTAGCTCTTTCTCGACCTACTGGA
GCTAACACCGTTTTACTC
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