CX300804

Overview
NameCX300804
Unique NameCX300804
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length384
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL82_ARATH (60S ribosomal protein L8-2 OS=Arabidopsis thaliana GN=RPL8B PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 5.395e-17
Identity = 40/53 (75.47%), Postives = 44/53 (83.02%), Query Frame = -3
Query:  224 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGRVRGSLRT 382
            RGVAMNPV+HPHGGGN QH+G   TVRRDK AGAK GQI+ARRTGR RG+  T
Sbjct:  201 RGVAMNPVEHPHGGGNHQHIGHASTVRRDKSAGAKVGQIAARRTGRRRGAAAT 253          
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL8_XENTR (60S ribosomal protein L8 OS=Xenopus tropicalis GN=rpl8 PE=2 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 1.202e-16
Identity = 38/55 (69.09%), Postives = 44/55 (80.00%), Query Frame = -3
Query:  218 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGRVRGSLRTDE 382
            RGVAMNPV+HP GGGN QH+GKP T+RRD PAG K G I+ARRTGR+RG+    E
Sbjct:  200 RGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQE 254          
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL8_XENLA (60S ribosomal protein L8 OS=Xenopus laevis GN=rpl8 PE=2 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 1.202e-16
Identity = 38/55 (69.09%), Postives = 44/55 (80.00%), Query Frame = -3
Query:  218 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGRVRGSLRTDE 382
            RGVAMNPV+HP GGGN QH+GKP T+RRD PAG K G I+ARRTGR+RG+    E
Sbjct:  200 RGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQE 254          
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL8_RAT (60S ribosomal protein L8 OS=Rattus norvegicus GN=Rpl8 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.202e-16
Identity = 38/55 (69.09%), Postives = 44/55 (80.00%), Query Frame = -3
Query:  218 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGRVRGSLRTDE 382
            RGVAMNPV+HP GGGN QH+GKP T+RRD PAG K G I+ARRTGR+RG+    E
Sbjct:  200 RGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQE 254          
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL8_MOUSE (60S ribosomal protein L8 OS=Mus musculus GN=Rpl8 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.202e-16
Identity = 38/55 (69.09%), Postives = 44/55 (80.00%), Query Frame = -3
Query:  218 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGRVRGSLRTDE 382
            RGVAMNPV+HP GGGN QH+GKP T+RRD PAG K G I+ARRTGR+RG+    E
Sbjct:  200 RGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQE 254          
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL8_HUMAN (60S ribosomal protein L8 OS=Homo sapiens GN=RPL8 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.202e-16
Identity = 38/55 (69.09%), Postives = 44/55 (80.00%), Query Frame = -3
Query:  218 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGRVRGSLRTDE 382
            RGVAMNPV+HP GGGN QH+GKP T+RRD PAG K G I+ARRTGR+RG+    E
Sbjct:  200 RGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQE 254          
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL8_BOVIN (60S ribosomal protein L8 OS=Bos taurus GN=RPL8 PE=2 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 1.202e-16
Identity = 38/55 (69.09%), Postives = 44/55 (80.00%), Query Frame = -3
Query:  218 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGRVRGSLRTDE 382
            RGVAMNPV+HP GGGN QH+GKP T+RRD PAG K G I+ARRTGR+RG+    E
Sbjct:  200 RGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQE 254          
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL8_ICTPU (60S ribosomal protein L8 OS=Ictalurus punctatus GN=rpl8 PE=2 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 1.570e-16
Identity = 38/55 (69.09%), Postives = 44/55 (80.00%), Query Frame = -3
Query:  218 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGRVRGSLRTDE 382
            RGVAMNPV+HP GGGN QH+GKP T+RRD PAG K G I+ARRTGR+RG+    E
Sbjct:  200 RGVAMNPVEHPFGGGNHQHIGKPSTIRRDVPAGRKVGLIAARRTGRLRGTKTVQE 254          
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL8_DANRE (60S ribosomal protein L8 OS=Danio rerio GN=rpl8 PE=2 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 2.050e-16
Identity = 37/50 (74.00%), Postives = 43/50 (86.00%), Query Frame = -3
Query:  233 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGRVRGS 382
            RGVAMNPV+HP GGGN QH+GKP T+RRD PAG K G I+ARRTGR+RG+
Sbjct:  200 RGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGT 249          
BLAST of CX300804 vs. ExPASy Swiss-Prot
Match: RL8_PONAB (60S ribosomal protein L8 OS=Pongo abelii GN=RPL8 PE=2 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 3.497e-16
Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = -3
Query:  218 RGVAMNPVDHPHGGGNQQHMGKPGTVRRDKPAGAKSGQISARRTGRVRGSLRTDE 382
            RGVAMNPV+HP GGGN QH+GKP T+RRD PAG K G I+ RRTGR+RG+    E
Sbjct:  200 RGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAVRRTGRLRGTKTVQE 254          
The following BLAST results are available for this feature:
BLAST of CX300804 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
RL82_ARATH5.395e-1775.4760S ribosomal protein L8-2 OS=Arabidopsis thaliana... [more]
RL8_XENTR1.202e-1669.0960S ribosomal protein L8 OS=Xenopus tropicalis GN=... [more]
RL8_XENLA1.202e-1669.0960S ribosomal protein L8 OS=Xenopus laevis GN=rpl8... [more]
RL8_RAT1.202e-1669.0960S ribosomal protein L8 OS=Rattus norvegicus GN=R... [more]
RL8_MOUSE1.202e-1669.0960S ribosomal protein L8 OS=Mus musculus GN=Rpl8 P... [more]
RL8_HUMAN1.202e-1669.0960S ribosomal protein L8 OS=Homo sapiens GN=RPL8 P... [more]
RL8_BOVIN1.202e-1669.0960S ribosomal protein L8 OS=Bos taurus GN=RPL8 PE=... [more]
RL8_ICTPU1.570e-1669.0960S ribosomal protein L8 OS=Ictalurus punctatus GN... [more]
RL8_DANRE2.050e-1674.0060S ribosomal protein L8 OS=Danio rerio GN=rpl8 PE... [more]
RL8_PONAB3.497e-1667.2760S ribosomal protein L8 OS=Pongo abelii GN=RPL8 P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC08002D09SK PhyRootSw1 Citrus sinensis cDNA clone C08002D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300804 ID=CX300804; Name=CX300804; organism=Citrus sinensis; type=EST; length=384bp
TTCGGCACGAGGTTTTTTTTTTTTTTTTTTTTTATTATAGCATTATTGTT
AAGATTATTGGGTAAAGTCAATCAATTGTTTCGATTGCAATTTGTTTTGA
TTTTATTCAAGGGCAGTAGATGCTTTTAAGTATAACTACTACATTGGATT
TATCGAGGGTTAATTTTCATAGGGGATCTCTCACTTATTTGATATATATT
ATTTATACAATTTATACTTCATCAGTGCGTAAAGATCCTCTGACTCTTCC
AGTACGACGAGCAGAGATTTGACCAGACTTGGCACCGGCTGGCTTGTCTC
TTCTGACAGTACCTGGCTTACCCATGTGCTGTTGGTTACCACCACCGTGA
GGGTGATCAACAGGGTTCATGGCAACACCACGGA
back to top