CX300734

Overview
NameCX300734
Unique NameCX300734
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length506
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX300734_ssr475 microsatellite CX300734_ssr475:475..486. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS23_LUMRU (40S ribosomal protein S23 OS=Lumbricus rubellus GN=RPS23 PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 7.505e-56
Identity = 102/142 (71.83%), Postives = 120/142 (84.51%), Query Frame = 1
Query:   28 GKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPRS 453
            GKP GLR  RKLKNHRRE+RW  K Y K+H  +  K+NP GG+  +KGIV+EK+G+EAKQPNSAIRK VRVQLIKNGKKI  FVPRDGCLNF++ENDEVL++GFG++G + GDIPG RFKVVKV+ VSLLALYK KKE+PRS
Sbjct:    2 GKPRGLRTARKLKNHRREQRWHDKDYKKSHLGTRWKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVASVSLLALYKQKKERPRS 143          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS23_ICTPU (40S ribosomal protein S23 OS=Ictalurus punctatus GN=rps23 PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 3.725e-55
Identity = 101/142 (71.13%), Postives = 121/142 (85.21%), Query Frame = 1
Query:   28 GKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPRS 453
            GK  GLR  RKL++HRRE++W  KQY KAH  + +KANP GG+  +KGIV+EK+G+EAKQPNSAIRK VRVQLIKNGKKI  FVP DGCLNF++ENDEVL++GFG++G + GDIPG RFKVVKV+ VSLLALYKGKKE+PRS
Sbjct:    2 GKCRGLRTARKLRDHRREQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS23_RAT (40S ribosomal protein S23 OS=Rattus norvegicus GN=Rps23 PE=2 SV=3)

HSP 1 Score: 212.616 bits (540), Expect = 8.298e-55
Identity = 100/142 (70.42%), Postives = 121/142 (85.21%), Query Frame = 1
Query:   28 GKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPRS 453
            GK  GLR  RKL++HRR+++W  KQY KAH  + +KANP GG+  +KGIV+EK+G+EAKQPNSAIRK VRVQLIKNGKKI  FVP DGCLNF++ENDEVL++GFG++G + GDIPG RFKVVKV+ VSLLALYKGKKE+PRS
Sbjct:    2 GKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS23_MOUSE (40S ribosomal protein S23 OS=Mus musculus GN=Rps23 PE=2 SV=3)

HSP 1 Score: 212.616 bits (540), Expect = 8.298e-55
Identity = 100/142 (70.42%), Postives = 121/142 (85.21%), Query Frame = 1
Query:   28 GKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPRS 453
            GK  GLR  RKL++HRR+++W  KQY KAH  + +KANP GG+  +KGIV+EK+G+EAKQPNSAIRK VRVQLIKNGKKI  FVP DGCLNF++ENDEVL++GFG++G + GDIPG RFKVVKV+ VSLLALYKGKKE+PRS
Sbjct:    2 GKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS23_HUMAN (40S ribosomal protein S23 OS=Homo sapiens GN=RPS23 PE=1 SV=3)

HSP 1 Score: 212.616 bits (540), Expect = 8.298e-55
Identity = 100/142 (70.42%), Postives = 121/142 (85.21%), Query Frame = 1
Query:   28 GKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPRS 453
            GK  GLR  RKL++HRR+++W  KQY KAH  + +KANP GG+  +KGIV+EK+G+EAKQPNSAIRK VRVQLIKNGKKI  FVP DGCLNF++ENDEVL++GFG++G + GDIPG RFKVVKV+ VSLLALYKGKKE+PRS
Sbjct:    2 GKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS23_CHILA (40S ribosomal protein S23 OS=Chinchilla lanigera GN=RPS23 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 8.298e-55
Identity = 100/142 (70.42%), Postives = 121/142 (85.21%), Query Frame = 1
Query:   28 GKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPRS 453
            GK  GLR  RKL++HRR+++W  KQY KAH  + +KANP GG+  +KGIV+EK+G+EAKQPNSAIRK VRVQLIKNGKKI  FVP DGCLNF++ENDEVL++GFG++G + GDIPG RFKVVKV+ VSLLALYKGKKE+PRS
Sbjct:    2 GKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS23_BOVIN (40S ribosomal protein S23 OS=Bos taurus GN=RPS23 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 8.298e-55
Identity = 100/142 (70.42%), Postives = 121/142 (85.21%), Query Frame = 1
Query:   28 GKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPRS 453
            GK  GLR  RKL++HRR+++W  KQY KAH  + +KANP GG+  +KGIV+EK+G+EAKQPNSAIRK VRVQLIKNGKKI  FVP DGCLNF++ENDEVL++GFG++G + GDIPG RFKVVKV+ VSLLALYKGKKE+PRS
Sbjct:    2 GKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS23_ASPFU (40S ribosomal protein S23 OS=Aspergillus fumigatus GN=rps23 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 8.298e-55
Identity = 101/144 (70.14%), Postives = 120/144 (83.33%), Query Frame = 1
Query:   22 GKGKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPRS 453
            GKGKP GL A RKL NHRRE+RW+   Y K    +  K++P GG+  +KGIV+EK+G+EAKQPNSAIRK V+VQLIKNGKK+  FVP DGCLNF+DENDEVL++GFG++GK+KGDIPG RFKVVKVSGV LLAL+K KKEKPRS
Sbjct:    2 GKGKPRGLNAARKLSNHRREQRWADLHYKKRLLGTAFKSSPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVKVQLIKNGKKVTAFVPNDGCLNFIDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVGLLALWKEKKEKPRS 145          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS23_PIG (40S ribosomal protein S23 OS=Sus scrofa GN=RPS23 PE=2 SV=3)

HSP 1 Score: 211.846 bits (538), Expect = 1.415e-54
Identity = 100/142 (70.42%), Postives = 120/142 (84.51%), Query Frame = 1
Query:   28 GKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPRS 453
            GK  GLR  RKL++HRR+ +W  KQY KAH  + +KANP GG+  +KGIV+EK+G+EAKQPNSAIRK VRVQLIKNGKKI  FVP DGCLNF++ENDEVL++GFG++G + GDIPG RFKVVKV+ VSLLALYKGKKE+PRS
Sbjct:    2 GKCRGLRTARKLRSHRRDHKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143          
BLAST of CX300734 vs. ExPASy Swiss-Prot
Match: RS23_NEUCR (40S ribosomal protein S23 OS=Neurospora crassa GN=rps-23 PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 3.153e-54
Identity = 102/142 (71.83%), Postives = 119/142 (83.80%), Query Frame = 1
Query:   28 GKPSGLRAGRKLKNHRREERWSSKQYNKAHSVSHMKANPLGGSCMSKGIVVEKIGLEAKQPNSAIRKGVRVQLIKNGKKIACFVPRDGCLNFVDENDEVLISGFGKRGKSKGDIPGCRFKVVKVSGVSLLALYKGKKEKPRS 453
            GKP GL A RKL+N+RRE+RWS   Y K    +  K++P GGS  +KGIV+EK+G+EAKQPNSAIRK VRVQLIKNGKK+  FVP DGCLNFVDENDEVL++GFG++GK+KGDIPG RFKVVKVSGV LLAL+K KKEKPRS
Sbjct:    4 GKPRGLNAARKLRNNRREQRWSDLHYKKRALGTAFKSSPFGGSSHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVGLLALWKEKKEKPRS 145          
The following BLAST results are available for this feature:
BLAST of CX300734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS23_LUMRU7.505e-5671.8340S ribosomal protein S23 OS=Lumbricus rubellus GN... [more]
RS23_ICTPU3.725e-5571.1340S ribosomal protein S23 OS=Ictalurus punctatus G... [more]
RS23_RAT8.298e-5570.4240S ribosomal protein S23 OS=Rattus norvegicus GN=... [more]
RS23_MOUSE8.298e-5570.4240S ribosomal protein S23 OS=Mus musculus GN=Rps23... [more]
RS23_HUMAN8.298e-5570.4240S ribosomal protein S23 OS=Homo sapiens GN=RPS23... [more]
RS23_CHILA8.298e-5570.4240S ribosomal protein S23 OS=Chinchilla lanigera G... [more]
RS23_BOVIN8.298e-5570.4240S ribosomal protein S23 OS=Bos taurus GN=RPS23 P... [more]
RS23_ASPFU8.298e-5570.1440S ribosomal protein S23 OS=Aspergillus fumigatus... [more]
RS23_PIG1.415e-5470.4240S ribosomal protein S23 OS=Sus scrofa GN=RPS23 P... [more]
RS23_NEUCR3.153e-5471.8340S ribosomal protein S23 OS=Neurospora crassa GN=... [more]

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Properties
Property NameValue
Genbank descriptionC08001F08SK PhyRootSw1 Citrus sinensis cDNA clone C08001F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300734 ID=CX300734; Name=CX300734; organism=Citrus sinensis; type=EST; length=506bp
CTCGTGCCGAATTCGGCACGAGGAAAAGGCAAGCCAAGTGGTTTACGCGC
GGGTCGCAAGTTAAAGAACCATCGTCGTGAGGAGAGATGGTCCAGCAAGC
AATACAACAAGGCTCACTCTGTTAGTCACATGAAGGCTAACCCATTAGGT
GGCTCTTGTATGTCTAAGGGTATCGTGGTTGAGAAAATTGGTTTGGAAGC
CAAGCAGCCTAACTCTGCCATTCGTAAGGGTGTTCGTGTGCAATTAATCA
AGAACGGAAAGAAGATCGCTTGCTTCGTTCCTCGTGACGGTTGCTTAAAC
TTCGTTGACGAAAACGACGAAGTTTTAATCTCTGGTTTCGGTAAGCGTGG
TAAATCTAAGGGTGATATTCCGGGATGCCGCTTCAAGGTTGTCAAGGTTT
CTGGTGTTTCATTGTTAGCTTTGTATAAAGGAAAGAAGGAGAAGCCAAGA
TCTTAAATATTATATGGCAATCTGATAATAATAATAACGTTCGCATAACC
GCGCGA
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