CN189546

Overview
NameCN189546
Unique NameCN189546
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2738 contig Csv1_Contig2738:1..653. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189546 vs. ExPASy Swiss-Prot
Match: PFD4_AVEFA (Probable prefoldin subunit 4 OS=Avena fatua GN=VIP3 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.072e-41
Identity = 81/125 (64.80%), Postives = 99/125 (79.20%), Query Frame = 3
Query:   57 EQAEKSDTVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDEDIVRFQIGEVFAHVPREEVETRIEEMKEVNSXXXXXXXXXXXXVLAQMNELKKILYGKFRDSINLEED 431
            +Q + ++  VTWEDQQNIN+F +LNNRFHEL DEI+ AKE N+NLEDAGNELIL DED+VRFQIGEVFAH+P ++VE R+E+MKE  +            +LAQM ELKKILYGKF+D+INLEED
Sbjct:    2 QQGDGTEAQVTWEDQQNINRFGRLNNRFHELTDEIRLAKEANENLEDAGNELILCDEDVVRFQIGEVFAHMPMDDVEARLEQMKEDAAKKLERLEEEKESILAQMAELKKILYGKFKDAINLEED 126          
BLAST of CN189546 vs. ExPASy Swiss-Prot
Match: PFD4_ARATH (Probable prefoldin subunit 4 OS=Arabidopsis thaliana GN=API3 PE=1 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 1.892e-38
Identity = 78/120 (65.00%), Postives = 93/120 (77.50%), Query Frame = 3
Query:   72 SDTVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDEDIVRFQIGEVFAHVPREEVETRIEEMKEVNSXXXXXXXXXXXXVLAQMNELKKILYGKFRDSINLEED 431
            S+  VTWEDQQNIN FS+LNNR H+L+D+IK AKE  +NLEDAGNELIL DE++VRFQIGEVFAHVPR++VET+IEEMKE               ++ QM  LKK+LY KF+DSINLEED
Sbjct:    9 SEMEVTWEDQQNINIFSRLNNRVHDLDDDIKSAKEKCENLEDAGNELILADEEMVRFQIGEVFAHVPRDDVETKIEEMKEATCKSLEKLEQEKESIVTQMAALKKVLYAKFKDSINLEED 128          
BLAST of CN189546 vs. ExPASy Swiss-Prot
Match: PFD4_HUMAN (Prefoldin subunit 4 OS=Homo sapiens GN=PFDN4 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.723e-15
Identity = 47/127 (37.01%), Postives = 74/127 (58.27%), Query Frame = 3
Query:   57 EQAEKSDTVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDED--IVRFQIGEVFAHVPREEVETRIEEMKEVNSXXXXXXXXXXXXVLAQMNELKKILYGKFRDSINLEED 431
            ++A   D  VT+EDQQ INKF++  +R  EL++EI+  K+   NLEDA ++++L D+D  ++ +QIG+VF    +EE +  +EE K+               +   + +LK  LY KF  +INLE D
Sbjct:    6 KKAAAEDVNVTFEDQQKINKFARNTSRITELKEEIEVKKKQLQNLEDACDDIMLADDDCLMIPYQIGDVFISHSQEETQEMLEEAKKNLQEEIDALESRVESIQRVLADLKVQLYAKFGSNINLEAD 132          
BLAST of CN189546 vs. ExPASy Swiss-Prot
Match: PFD4_BOVIN (Prefoldin subunit 4 OS=Bos taurus GN=PFDN4 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.251e-15
Identity = 47/127 (37.01%), Postives = 73/127 (57.48%), Query Frame = 3
Query:   57 EQAEKSDTVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDED--IVRFQIGEVFAHVPREEVETRIEEMKEVNSXXXXXXXXXXXXVLAQMNELKKILYGKFRDSINLEED 431
            ++A   D  VT+EDQQ INKF++  +R  EL++EI+  K+   NLEDA  +++L D+D  ++ +QIG+VF    +EE +  +EE K+               +   + +LK  LY KF  +INLE D
Sbjct:    6 KKAAAEDVNVTFEDQQKINKFARNTSRITELKEEIEVKKKQLQNLEDACEDIMLADDDCLMIPYQIGDVFISHSQEETQEMLEEAKKNLQEEIDALESRVESIQRVLADLKVQLYAKFGSNINLEAD 132          
BLAST of CN189546 vs. ExPASy Swiss-Prot
Match: PFD4_YEAST (Prefoldin subunit 4 OS=Saccharomyces cerevisiae GN=GIM3 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.751e-13
Identity = 42/123 (34.15%), Postives = 72/123 (58.54%), Query Frame = 3
Query:   60 QAEKSDTVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDED-IVRFQIGEVFAHVPREEVETRIEEMKEVNSXXXXXXXXXXXXVLAQMNELKKILYGKFRDSINLE 425
            Q ++++T VT+EDQQ IN+FSKL  R   +  E+   +E  + L+D   E+ L DED  V++++G++F  + + +V  ++E+  E               + ++++ LK ILY KF D+INLE
Sbjct:    6 QGQRNNTQVTFEDQQKINEFSKLIMRKDAIAQELSLQREEKEYLDDVSLEIELIDEDEPVQYKVGDLFIFMKQSKVTAQLEKDAERLDNKIETLEDKQRDIDSRLDALKAILYAKFGDNINLE 128          
BLAST of CN189546 vs. ExPASy Swiss-Prot
Match: PFD4_DICDI (Probable prefoldin subunit 4 OS=Dictyostelium discoideum GN=pfdn4 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.365e-12
Identity = 46/129 (35.66%), Postives = 68/129 (52.71%), Query Frame = 3
Query:   45 TMQHEQAEKSDTVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDEDI-VRFQIGEVFAHVPREEVETRIEEMKEVNSXXXXXXXXXXXXVLAQMNELKKILYGKFRDSINLEE 428
            TM  +  E  +T V   DQ+ IN F +LNNR HEL  E K  +E  +   D+ ++L + D+D   ++ +GE F  V +E+ E+ IE+                  +  +  ELK ILY KF++SINLEE
Sbjct:    4 TMIEKVDEVLETEVCAADQKMINLFGRLNNRKHELMREKKAKQEDLEKATDSQDDLFIADDDSKFKYSMGEAFLEVNKEDAESLIEKYINKLEEDIKKIDSDINDINEKHKELKVILYAKFKNSINLEE 132          
The following BLAST results are available for this feature:
BLAST of CN189546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PFD4_AVEFA1.072e-4164.80Probable prefoldin subunit 4 OS=Avena fatua GN=VIP... [more]
PFD4_ARATH1.892e-3865.00Probable prefoldin subunit 4 OS=Arabidopsis thalia... [more]
PFD4_HUMAN1.723e-1537.01Prefoldin subunit 4 OS=Homo sapiens GN=PFDN4 PE=1 ... [more]
PFD4_BOVIN2.251e-1537.01Prefoldin subunit 4 OS=Bos taurus GN=PFDN4 PE=2 SV... [more]
PFD4_YEAST2.751e-1334.15Prefoldin subunit 4 OS=Saccharomyces cerevisiae GN... [more]
PFD4_DICDI1.365e-1235.66Probable prefoldin subunit 4 OS=Dictyostelium disc... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002A14_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002A14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189546 ID=CN189546; Name=CN189546; organism=Citrus sinensis; type=EST; length=656bp
GAGGACCCGCTCTACTGTTTCTCCGCAGACAGCACTCGAAATTCACGATG
CAACATGAACAGGCTGAGAAATCTGATACGGTGGTGACATGGGAAGATCA
ACAAAACATTAACAAATTTTCCAAATTAAACAACAGATTCCACGAGCTTG
AAGATGAAATCAAGTTTGCCAAGGAAACAAACGATAATCTGGAGGATGCA
GGCAATGAATTGATTCTCACTGATGAAGACATAGTTCGCTTCCAAATAGG
CGAAGTCTTTGCTCATGTGCCAAGGGAAGAAGTGGAGACCAGAATAGAAG
AGATGAAAGAGGTGAATAGCAAAACTCTGGAAAAACTTGAGAAAGAGAAA
GAAACTGTTCTGGCCCAAATGAATGAATTGAAGAAGATTCTATACGGGAA
GTTCAGGGACTCTATCAACTTAGAGGAGGATTAATACACCATGACTGTCA
TTTCTCTGTAATTTGGTTGCCTCTCACTTTTGATTTAAATATTAGGGATG
ACTTTACTCCAATCTTCAACTTGCAATTGAGTATCCTGAGTGAAGCCAGT
GCCGATTTTATTTACTACAAATTGGTTTTTTTTTTTTTTGGTTCCAGTTT
TAGAACTGTCCAACTTGATATTAACAGGAATGAAGTTGGCTGGAAAATGA
ATGTGT
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