DR908619

Overview
NameDR908619
Unique NameDR908619
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4927 contig Csv1_Contig4927:574..1178. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908619 vs. ExPASy Swiss-Prot
Match: RU17_ARATH (U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana GN=RNU1 PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.036e-41
Identity = 79/89 (88.76%), Postives = 87/89 (97.75%), Query Frame = 3
Query:    3 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPR 269
            YKTLFV+RL+YE++ESKIKREFESYGPIKRV LVTD+ TNKP+GYAFIEYMHTRDMKAAYKQADG+K+DGRRVLVDVERGRTVPNWRPR
Sbjct:  137 YKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQADGQKIDGRRVLVDVERGRTVPNWRPR 225          
BLAST of DR908619 vs. ExPASy Swiss-Prot
Match: RU17_XENTR (U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus tropicalis GN=snrnp70 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.719e-35
Identity = 70/113 (61.95%), Postives = 85/113 (75.22%), Query Frame = 3
Query:    3 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRXXXXXXXXXXXXXXXXNQRYSGRE 341
            +KTLFVAR++Y+TTESK++REFE YGPIKR+ +V +K + KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDVERGRTV  WRPR                N R+SGR+
Sbjct:  102 FKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRD 214          
BLAST of DR908619 vs. ExPASy Swiss-Prot
Match: RU17_MOUSE (U1 small nuclear ribonucleoprotein 70 kDa OS=Mus musculus GN=Snrnp70 PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 4.857e-35
Identity = 70/113 (61.95%), Postives = 84/113 (74.34%), Query Frame = 3
Query:    3 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRXXXXXXXXXXXXXXXXNQRYSGRE 341
            +KTLFVAR++Y+TTESK++REFE YGPIKR+ +V  K + KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDVERGRTV  WRPR                N R+SGR+
Sbjct:  102 FKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRD 214          
BLAST of DR908619 vs. ExPASy Swiss-Prot
Match: RU17_HUMAN (U1 small nuclear ribonucleoprotein 70 kDa OS=Homo sapiens GN=SNRNP70 PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 4.857e-35
Identity = 70/113 (61.95%), Postives = 84/113 (74.34%), Query Frame = 3
Query:    3 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRXXXXXXXXXXXXXXXXNQRYSGRE 341
            +KTLFVAR++Y+TTESK++REFE YGPIKR+ +V  K + KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDVERGRTV  WRPR                N R+SGR+
Sbjct:  102 FKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRD 214          
BLAST of DR908619 vs. ExPASy Swiss-Prot
Match: RU17_BOVIN (U1 small nuclear ribonucleoprotein 70 kDa OS=Bos taurus GN=SNRNP70 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.857e-35
Identity = 70/113 (61.95%), Postives = 84/113 (74.34%), Query Frame = 3
Query:    3 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRXXXXXXXXXXXXXXXXNQRYSGRE 341
            +KTLFVAR++Y+TTESK++REFE YGPIKR+ +V  K + KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDVERGRTV  WRPR                N R+SGR+
Sbjct:  102 FKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRD 214          
BLAST of DR908619 vs. ExPASy Swiss-Prot
Match: RU17_XENLA (U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus laevis GN=snrnp70 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.196e-33
Identity = 74/128 (57.81%), Postives = 90/128 (70.31%), Query Frame = 3
Query:    3 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETN---KPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRXXXXXXXXXXXXXXXXNQRYSGREQEPSRGPSRSAE 377
            +KTLFVAR++Y+TTESK++REFE YGPIKR+ +V +K +    KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDVERGRTV  WRPR                N R+SGR+ + SR   R  E
Sbjct:  102 FKTLFVARVNYDTTESKLRREFEVYGPIKRIHIVYNKGSEGSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRD-DTSRYDERDRE 228          
BLAST of DR908619 vs. ExPASy Swiss-Prot
Match: RU17_DROME (U1 small nuclear ribonucleoprotein 70 kDa OS=Drosophila melanogaster GN=snRNP70K PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 6.565e-32
Identity = 63/113 (55.75%), Postives = 83/113 (73.45%), Query Frame = 3
Query:    3 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRXXXXXXXXXXXXXXXXNQRYSGRE 341
            ++TLF+AR++Y+T+ESK++REFE YGPIK++ L+ D+E+ KP+GYAFIEY H RDM AAYK ADG+K+D +RVLVDVER RTV  W PR                N ++SGRE
Sbjct:  101 FRTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKHADGKKIDSKRVLVDVERARTVKGWLPRRLGGGLGGTRRGGNDVNIKHSGRE 213          
BLAST of DR908619 vs. ExPASy Swiss-Prot
Match: RU17_DICDI (U1 small nuclear ribonucleoprotein 70 kDa OS=Dictyostelium discoideum GN=snrnp70 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.977e-28
Identity = 62/126 (49.21%), Postives = 80/126 (63.49%), Query Frame = 3
Query:    3 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKET-NKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRXXXXXXXXXXXXXXXXNQRYSGREQEPSRGPSRSAE 377
            YKT+FV+R+SY+TT+ K++ EF  +GPIK + LV D     K  GYAFIE+   RDMKAAYKQADG K+D RR++VD+ERGR + NW+PR                NQ +SGRE   SR   +  E
Sbjct:   98 YKTIFVSRISYKTTQQKLEFEFGQFGPIKSLFLVKDSNNPEKHTGYAFIEFERERDMKAAYKQADGMKIDDRRIVVDIERGRVIKNWKPRKFGGGLGNTRAGGVDVNQTFSGREMSESREKEKERE 223          
BLAST of DR908619 vs. ExPASy Swiss-Prot
Match: RU17_SCHPO (U1 small nuclear ribonucleoprotein 70 kDa homolog OS=Schizosaccharomyces pombe GN=usp101 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.015e-24
Identity = 52/89 (58.43%), Postives = 68/89 (76.40%), Query Frame = 3
Query:    3 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPR 269
            YKT+F++RLSY+T ES I+REF  YGPI+R+R+V +K T K  GYAF+ +   RD+K AYK + G  L+GRR++VDVERGRTV  W PR
Sbjct:   99 YKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKASAGLMLNGRRIVVDVERGRTVKGWLPR 187          
BLAST of DR908619 vs. ExPASy Swiss-Prot
Match: U1SBP_DANRE (U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Danio rerio GN=snrnp35 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.570e-17
Identity = 55/130 (42.31%), Postives = 73/130 (56.15%), Query Frame = 3
Query:    9 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRXXXXXXXXXXXXXXXXNQRYSGREQEPSRGP-----SRSAEPR 383
            TLFVARL+ +TTE K++  F  +G I+R+RLV D  T   + YAFIEY   R +K A++ A+   LD   +LVDVE+ RT+P WRPR                  R+ GR++ P R P      R AEPR
Sbjct:   51 TLFVARLNPQTTEEKLRDVFSKFGDIRRLRLVRDVVTGFSKRYAFIEYKEERSLKRAWRDANKLILDQYELLVDVEQERTLPGWRPR---RLGGGQGGQKESGQLRFGGRDR-PFRKPINLSTRRPAEPR 176          
The following BLAST results are available for this feature:
BLAST of DR908619 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RU17_ARATH2.036e-4188.76U1 small nuclear ribonucleoprotein 70 kDa OS=Arabi... [more]
RU17_XENTR3.719e-3561.95U1 small nuclear ribonucleoprotein 70 kDa OS=Xenop... [more]
RU17_MOUSE4.857e-3561.95U1 small nuclear ribonucleoprotein 70 kDa OS=Mus m... [more]
RU17_HUMAN4.857e-3561.95U1 small nuclear ribonucleoprotein 70 kDa OS=Homo ... [more]
RU17_BOVIN4.857e-3561.95U1 small nuclear ribonucleoprotein 70 kDa OS=Bos t... [more]
RU17_XENLA1.196e-3357.81U1 small nuclear ribonucleoprotein 70 kDa OS=Xenop... [more]
RU17_DROME6.565e-3255.75U1 small nuclear ribonucleoprotein 70 kDa OS=Droso... [more]
RU17_DICDI1.977e-2849.21U1 small nuclear ribonucleoprotein 70 kDa OS=Dicty... [more]
RU17_SCHPO1.015e-2458.43U1 small nuclear ribonucleoprotein 70 kDa homolog ... [more]
U1SBP_DANRE1.570e-1742.31U11/U12 small nuclear ribonucleoprotein 35 kDa pro... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16747 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-16_F10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908619 ID=DR908619; Name=DR908619; organism=Citrus sinensis; type=EST; length=605bp
CATACAAGACACTGTTTGTTGCTAGGCTGAGTTATGAGACAACTGAGAGT
AAAATCAAAAGGGAGTTTGAGTCTTATGGGCCAATTAAACGGGTTCGGTT
GGTTACTGATAAAGAGACAAATAAACCCAGAGGTTATGCTTTCATTGAGT
ACATGCACACTCGGGATATGAAAGCTGCATATAAACAAGCTGATGGGAGG
AAGCTTGATGGCAGAAGGGTGCTTGTTGATGTTGAGCGTGGTCGAACAGT
CCCTAATTGGCGTCCTCGCAGGCTAGGCGGTGGACTTGGAACAACCAGGG
TTGGAGGGGAAGAAGTTAACCAGAGATATTCTGGAAGGGAGCAAGAGCCT
TCAAGAGGACCATCTCGGTCTGCAGAGCCTAGGATACGAGAGGATCGACA
TGGTGACCGGGAAAGATCCCGTGAAAGGGGGAGGGATAGAGAGAGGGAAC
GGGAGAAGTCCCTTGAGCTCTCCCATGACAGACCAAGAGATCGTGATCAT
AGAGATGATAGACACCATAGAGATCGTGACAGAACTAGAGACAGAGAGAG
GGAGAGAGACCGAGGGCGTGAACGTGACCGTGACCGAACACGTGATCGTG
ATCGC
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