DR908619
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DR908619 vs. ExPASy Swiss-Prot
Match: RU17_ARATH (U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana GN=RNU1 PE=1 SV=1) HSP 1 Score: 168.703 bits (426), Expect = 2.036e-41 Identity = 79/89 (88.76%), Postives = 87/89 (97.75%), Query Frame = 3 Query: 3 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPR 269 YKTLFV+RL+YE++ESKIKREFESYGPIKRV LVTD+ TNKP+GYAFIEYMHTRDMKAAYKQADG+K+DGRRVLVDVERGRTVPNWRPR Sbjct: 137 YKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQADGQKIDGRRVLVDVERGRTVPNWRPR 225
BLAST of DR908619 vs. ExPASy Swiss-Prot
Match: RU17_XENTR (U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus tropicalis GN=snrnp70 PE=2 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 3.719e-35 Identity = 70/113 (61.95%), Postives = 85/113 (75.22%), Query Frame = 3 Query: 3 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRXXXXXXXXXXXXXXXXNQRYSGRE 341 +KTLFVAR++Y+TTESK++REFE YGPIKR+ +V +K + KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDVERGRTV WRPR N R+SGR+ Sbjct: 102 FKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRD 214
BLAST of DR908619 vs. ExPASy Swiss-Prot
Match: RU17_MOUSE (U1 small nuclear ribonucleoprotein 70 kDa OS=Mus musculus GN=Snrnp70 PE=1 SV=2) HSP 1 Score: 147.517 bits (371), Expect = 4.857e-35 Identity = 70/113 (61.95%), Postives = 84/113 (74.34%), Query Frame = 3 Query: 3 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRXXXXXXXXXXXXXXXXNQRYSGRE 341 +KTLFVAR++Y+TTESK++REFE YGPIKR+ +V K + KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDVERGRTV WRPR N R+SGR+ Sbjct: 102 FKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRD 214
BLAST of DR908619 vs. ExPASy Swiss-Prot
Match: RU17_HUMAN (U1 small nuclear ribonucleoprotein 70 kDa OS=Homo sapiens GN=SNRNP70 PE=1 SV=2) HSP 1 Score: 147.517 bits (371), Expect = 4.857e-35 Identity = 70/113 (61.95%), Postives = 84/113 (74.34%), Query Frame = 3 Query: 3 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRXXXXXXXXXXXXXXXXNQRYSGRE 341 +KTLFVAR++Y+TTESK++REFE YGPIKR+ +V K + KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDVERGRTV WRPR N R+SGR+ Sbjct: 102 FKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRD 214
BLAST of DR908619 vs. ExPASy Swiss-Prot
Match: RU17_BOVIN (U1 small nuclear ribonucleoprotein 70 kDa OS=Bos taurus GN=SNRNP70 PE=2 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 4.857e-35 Identity = 70/113 (61.95%), Postives = 84/113 (74.34%), Query Frame = 3 Query: 3 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRXXXXXXXXXXXXXXXXNQRYSGRE 341 +KTLFVAR++Y+TTESK++REFE YGPIKR+ +V K + KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDVERGRTV WRPR N R+SGR+ Sbjct: 102 FKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRD 214
BLAST of DR908619 vs. ExPASy Swiss-Prot
Match: RU17_XENLA (U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus laevis GN=snrnp70 PE=2 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 1.196e-33 Identity = 74/128 (57.81%), Postives = 90/128 (70.31%), Query Frame = 3 Query: 3 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETN---KPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRXXXXXXXXXXXXXXXXNQRYSGREQEPSRGPSRSAE 377 +KTLFVAR++Y+TTESK++REFE YGPIKR+ +V +K + KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDVERGRTV WRPR N R+SGR+ + SR R E Sbjct: 102 FKTLFVARVNYDTTESKLRREFEVYGPIKRIHIVYNKGSEGSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRD-DTSRYDERDRE 228
BLAST of DR908619 vs. ExPASy Swiss-Prot
Match: RU17_DROME (U1 small nuclear ribonucleoprotein 70 kDa OS=Drosophila melanogaster GN=snRNP70K PE=1 SV=2) HSP 1 Score: 137.117 bits (344), Expect = 6.565e-32 Identity = 63/113 (55.75%), Postives = 83/113 (73.45%), Query Frame = 3 Query: 3 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRXXXXXXXXXXXXXXXXNQRYSGRE 341 ++TLF+AR++Y+T+ESK++REFE YGPIK++ L+ D+E+ KP+GYAFIEY H RDM AAYK ADG+K+D +RVLVDVER RTV W PR N ++SGRE Sbjct: 101 FRTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKHADGKKIDSKRVLVDVERARTVKGWLPRRLGGGLGGTRRGGNDVNIKHSGRE 213
BLAST of DR908619 vs. ExPASy Swiss-Prot
Match: RU17_DICDI (U1 small nuclear ribonucleoprotein 70 kDa OS=Dictyostelium discoideum GN=snrnp70 PE=3 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 1.977e-28 Identity = 62/126 (49.21%), Postives = 80/126 (63.49%), Query Frame = 3 Query: 3 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKET-NKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRXXXXXXXXXXXXXXXXNQRYSGREQEPSRGPSRSAE 377 YKT+FV+R+SY+TT+ K++ EF +GPIK + LV D K GYAFIE+ RDMKAAYKQADG K+D RR++VD+ERGR + NW+PR NQ +SGRE SR + E Sbjct: 98 YKTIFVSRISYKTTQQKLEFEFGQFGPIKSLFLVKDSNNPEKHTGYAFIEFERERDMKAAYKQADGMKIDDRRIVVDIERGRVIKNWKPRKFGGGLGNTRAGGVDVNQTFSGREMSESREKEKERE 223
BLAST of DR908619 vs. ExPASy Swiss-Prot
Match: RU17_SCHPO (U1 small nuclear ribonucleoprotein 70 kDa homolog OS=Schizosaccharomyces pombe GN=usp101 PE=1 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.015e-24 Identity = 52/89 (58.43%), Postives = 68/89 (76.40%), Query Frame = 3 Query: 3 YKTLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPR 269 YKT+F++RLSY+T ES I+REF YGPI+R+R+V +K T K GYAF+ + RD+K AYK + G L+GRR++VDVERGRTV W PR Sbjct: 99 YKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKASAGLMLNGRRIVVDVERGRTVKGWLPR 187
BLAST of DR908619 vs. ExPASy Swiss-Prot
Match: U1SBP_DANRE (U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Danio rerio GN=snrnp35 PE=2 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.570e-17 Identity = 55/130 (42.31%), Postives = 73/130 (56.15%), Query Frame = 3 Query: 9 TLFVARLSYETTESKIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRXXXXXXXXXXXXXXXXNQRYSGREQEPSRGP-----SRSAEPR 383 TLFVARL+ +TTE K++ F +G I+R+RLV D T + YAFIEY R +K A++ A+ LD +LVDVE+ RT+P WRPR R+ GR++ P R P R AEPR Sbjct: 51 TLFVARLNPQTTEEKLRDVFSKFGDIRRLRLVRDVVTGFSKRYAFIEYKEERSLKRAWRDANKLILDQYELLVDVEQERTLPGWRPR---RLGGGQGGQKESGQLRFGGRDR-PFRKPINLSTRRPAEPR 176 The following BLAST results are available for this feature:
BLAST of DR908619 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16
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Sequences
The
following sequences are available for this feature:
EST sequence >DR908619 ID=DR908619; Name=DR908619; organism=Citrus sinensis; type=EST; length=605bpback to top |