CX288716
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288716 vs. ExPASy Swiss-Prot
Match: CPSF5_RAT (Cleavage and polyadenylation specificity factor subunit 5 OS=Rattus norvegicus GN=Nudt21 PE=2 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 5.677e-40 Identity = 75/130 (57.69%), Postives = 93/130 (71.54%), Query Frame = 3 Query: 114 VNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWWRPNFETIMYPYCPPHI 503 +N YPL++YTFGTKEP EKD+SVA R RM+ + K GMR +VE +L+V EH PH+LLLQ+G TF KLPGG L PGE+E+EGLKR +T LG ++ DW I +C+ WWRPNFE YPY P HI Sbjct: 37 INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILG-RQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHI 165
BLAST of CX288716 vs. ExPASy Swiss-Prot
Match: CPSF5_PONAB (Cleavage and polyadenylation specificity factor subunit 5 OS=Pongo abelii GN=NUDT21 PE=2 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 5.677e-40 Identity = 75/130 (57.69%), Postives = 93/130 (71.54%), Query Frame = 3 Query: 114 VNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWWRPNFETIMYPYCPPHI 503 +N YPL++YTFGTKEP EKD+SVA R RM+ + K GMR +VE +L+V EH PH+LLLQ+G TF KLPGG L PGE+E+EGLKR +T LG ++ DW I +C+ WWRPNFE YPY P HI Sbjct: 37 INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILG-RQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHI 165
BLAST of CX288716 vs. ExPASy Swiss-Prot
Match: CPSF5_MOUSE (Cleavage and polyadenylation specificity factor subunit 5 OS=Mus musculus GN=Nudt21 PE=2 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 5.677e-40 Identity = 75/130 (57.69%), Postives = 93/130 (71.54%), Query Frame = 3 Query: 114 VNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWWRPNFETIMYPYCPPHI 503 +N YPL++YTFGTKEP EKD+SVA R RM+ + K GMR +VE +L+V EH PH+LLLQ+G TF KLPGG L PGE+E+EGLKR +T LG ++ DW I +C+ WWRPNFE YPY P HI Sbjct: 37 INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILG-RQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHI 165
BLAST of CX288716 vs. ExPASy Swiss-Prot
Match: CPSF5_HUMAN (Cleavage and polyadenylation specificity factor subunit 5 OS=Homo sapiens GN=NUDT21 PE=1 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 5.677e-40 Identity = 75/130 (57.69%), Postives = 93/130 (71.54%), Query Frame = 3 Query: 114 VNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWWRPNFETIMYPYCPPHI 503 +N YPL++YTFGTKEP EKD+SVA R RM+ + K GMR +VE +L+V EH PH+LLLQ+G TF KLPGG L PGE+E+EGLKR +T LG ++ DW I +C+ WWRPNFE YPY P HI Sbjct: 37 INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILG-RQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHI 165
BLAST of CX288716 vs. ExPASy Swiss-Prot
Match: CPSF5_BOVIN (Cleavage and polyadenylation specificity factor subunit 5 OS=Bos taurus GN=NUDT21 PE=2 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 5.677e-40 Identity = 75/130 (57.69%), Postives = 93/130 (71.54%), Query Frame = 3 Query: 114 VNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWWRPNFETIMYPYCPPHI 503 +N YPL++YTFGTKEP EKD+SVA R RM+ + K GMR +VE +L+V EH PH+LLLQ+G TF KLPGG L PGE+E+EGLKR +T LG ++ DW I +C+ WWRPNFE YPY P HI Sbjct: 37 INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILG-RQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHI 165
BLAST of CX288716 vs. ExPASy Swiss-Prot
Match: CPSF5_DANRE (Cleavage and polyadenylation specificity factor subunit 5 OS=Danio rerio GN=cpsf5 PE=2 SV=1) HSP 1 Score: 162.54 bits (410), Expect = 9.684e-40 Identity = 75/130 (57.69%), Postives = 92/130 (70.77%), Query Frame = 3 Query: 114 VNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWWRPNFETIMYPYCPPHI 503 +N YPL++YTFGTKEP EKD+SVA R RM+ + K GMR +VE +L+V EH PH+LLLQ+G TF KLPGG L PGE+E+EGLKR +T LG + DW I +C+ WWRPNFE YPY P HI Sbjct: 38 INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFEKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILG-RQDGVKQDWVIDDCIGNWWRPNFEPPQYPYIPAHI 166
BLAST of CX288716 vs. ExPASy Swiss-Prot
Match: CPSF5_XENLA (Cleavage and polyadenylation specificity factor subunit 5 OS=Xenopus laevis GN=cpsf5 PE=2 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 1.265e-39 Identity = 75/130 (57.69%), Postives = 92/130 (70.77%), Query Frame = 3 Query: 114 VNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWWRPNFETIMYPYCPPHI 503 +N YPL++YTFGTKEP EKD+SVA R RM+ + K GMR +VE +L+V EH PH+LLLQ+G TF KLPGG L PGE+E+EGLKR +T LG + DW I +C+ WWRPNFE YPY P HI Sbjct: 37 INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILG-RQDGVQQDWVIDDCIGNWWRPNFEPPQYPYIPAHI 165
BLAST of CX288716 vs. ExPASy Swiss-Prot
Match: CPSF5_DICDI (Cleavage and polyadenylation specificity factor subunit 5 OS=Dictyostelium discoideum GN=cpsf5 PE=3 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 9.380e-35 Identity = 71/125 (56.80%), Postives = 92/125 (73.60%), Query Frame = 3 Query: 132 SSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLG-ANSPALVPDWQIGECVAIWWRPNFETIMYPYCPPHI 503 +SY+FG KE K EK+ S+ +LAR+K +Y KEG+R +VE I+++ +H HPHILLLQ N F KLPGG+LKPGENEI+GL RKLT KL +P W+IG+ V+ WWRPNFE ++PY P HI Sbjct: 13 TSYSFG-KEEKKEKEQSLTSKLARLKDSYEKEGLRKAVEGIIIIHDHGHPHILLLQDNNYF-KLPGGKLKPGENEIDGLIRKLTKKLSPTGTPVSDAPWEIGDHVSTWWRPNFEPSLFPYIPSHI 135 The following BLAST results are available for this feature:
BLAST of CX288716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX288716 ID=CX288716; Name=CX288716; organism=Citrus clementina; type=EST; length=503bpback to top |