CX288877

Overview
NameCX288877
Unique NameCX288877
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length231
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: RH5_ORYSJ (DEAD-box ATP-dependent RNA helicase 5 OS=Oryza sativa subsp. japonica GN=Os07g0301200 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.266e-31
Identity = 60/76 (78.95%), Postives = 70/76 (92.11%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            +E ML+R GW   ++HG KAQH+RTK+LSLFKEG+CPLM+ATDVA+RGLDIPDVEVVINYS+PLTTEDYVHRIGRT
Sbjct:  358 VETMLQRRGWSAVSVHGDKAQHDRTKALSLFKEGSCPLMIATDVASRGLDIPDVEVVINYSYPLTTEDYVHRIGRT 433          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: RH5_ARATH (DEAD-box ATP-dependent RNA helicase 5 OS=Arabidopsis thaliana GN=RH5 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.594e-31
Identity = 62/76 (81.58%), Postives = 69/76 (90.79%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            LE  L++ GWK  +IHG KAQ ERT+SLSLFKEG+CPL+VATDVAARGLDIPDVEVVINY+FPLTTEDYVHRIGRT
Sbjct:  382 LERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIPDVEVVINYTFPLTTEDYVHRIGRT 457          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP3_PICGU (ATP-dependent RNA helicase DBP3 OS=Pichia guilliermondii GN=DBP3 PE=3 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 8.632e-23
Identity = 52/76 (68.42%), Postives = 62/76 (81.58%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            +E MLRRSG+ VAAIHG  +Q +RT +L  FK G   L++ATDVAARGLDIP+V+VVIN +FPLT EDYVHRIGRT
Sbjct:  386 VEAMLRRSGFNVAAIHGDLSQQQRTSALDSFKRGDSNLLLATDVAARGLDIPNVKVVINLTFPLTVEDYVHRIGRT 461          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP3_USTMA (ATP-dependent RNA helicase DBP3 OS=Ustilago maydis GN=DBP3 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.127e-22
Identity = 51/76 (67.11%), Postives = 59/76 (77.63%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            +E  LRR G+KV+ IHG   Q+ER  SL  FK    PL+VATDVAARGLDIP+VE V+NY+FPLT EDYVHRIGRT
Sbjct:  436 IEQTLRRGGFKVSGIHGDLGQNERIASLERFKSAETPLLVATDVAARGLDIPNVEHVVNYTFPLTIEDYVHRIGRT 511          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP3_PHANO (ATP-dependent RNA helicase DBP3 OS=Phaeosphaeria nodorum GN=DBP3 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.512e-22
Identity = 49/76 (64.47%), Postives = 61/76 (80.26%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            +EN +R  G++V  IHG  +Q +R+ SL+ FKEG  PL+VATDVAARGLDIP V++VIN +FPLT EDYVHRIGRT
Sbjct:  444 IENFIRMKGFRVGGIHGDLSQEKRSASLAAFKEGQVPLLVATDVAARGLDIPAVKLVINVTFPLTAEDYVHRIGRT 519          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP3_PICST (ATP-dependent RNA helicase DBP3 OS=Pichia stipitis GN=DBP3 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.280e-22
Identity = 49/76 (64.47%), Postives = 63/76 (82.89%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            +E +LRR+ + VAAIHG  +Q +RT +L+ FK+G   L++ATDVAARGLDIP+V+VVIN +FPLT EDYVHRIGRT
Sbjct:  378 IEGLLRRNSYNVAAIHGDLSQQQRTNALNSFKKGESSLLLATDVAARGLDIPNVKVVINLTFPLTVEDYVHRIGRT 453          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP3_BOTFB (ATP-dependent RNA helicase dbp3 OS=Botryotinia fuckeliana (strain B05.10) GN=dbp3 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.280e-22
Identity = 48/76 (63.16%), Postives = 62/76 (81.58%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            +E+ +R+ G++VA IHG  +Q +RT+SL  FK G  P++VATDVAARGLDIP V++VIN +FPLT EDYVHRIGRT
Sbjct:  444 VESFIRQKGFRVAGIHGDLSQEQRTRSLEAFKSGNTPVLVATDVAARGLDIPAVKLVINCTFPLTVEDYVHRIGRT 519          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP3_SCLS1 (ATP-dependent RNA helicase dbp3 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=dbp3 PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 4.284e-22
Identity = 48/76 (63.16%), Postives = 61/76 (80.26%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            +E  +R+ G++VA IHG  +Q +RT+SL  FK G  P++VATDVAARGLDIP V++VIN +FPLT EDYVHRIGRT
Sbjct:  448 VEGFIRQKGFRVAGIHGDLSQEQRTRSLEAFKSGNTPVLVATDVAARGLDIPAVKLVINCTFPLTVEDYVHRIGRT 523          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP3_GIBZE (ATP-dependent RNA helicase DBP3 OS=Gibberella zeae GN=DBP3 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.284e-22
Identity = 49/76 (64.47%), Postives = 59/76 (77.63%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            +EN L R G +V  IHG   Q +RT+SL  FK G  P++VATDVAARGLDIP+V++VIN +FPLT EDYVHRIGRT
Sbjct:  433 IENFLSRKGIRVGGIHGDLRQEQRTRSLEAFKSGQTPVLVATDVAARGLDIPEVKLVINVTFPLTIEDYVHRIGRT 508          
BLAST of CX288877 vs. ExPASy Swiss-Prot
Match: DBP3_ASPCL (ATP-dependent RNA helicase dbp3 OS=Aspergillus clavatus GN=dbp3 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.284e-22
Identity = 50/76 (65.79%), Postives = 58/76 (76.32%), Query Frame = 3
Query:    3 LENMLRRSGWKVAAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRT 230
            +E +LR   +KVA IHG   QHER KSL  FK G   ++VATDVAARGLDIP V++VIN +FPLT EDYVHRIGRT
Sbjct:  354 VERLLRNKNFKVAGIHGDLNQHERFKSLDAFKSGAATVLVATDVAARGLDIPSVKLVINVTFPLTVEDYVHRIGRT 429          
The following BLAST results are available for this feature:
BLAST of CX288877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH5_ORYSJ2.266e-3178.95DEAD-box ATP-dependent RNA helicase 5 OS=Oryza sat... [more]
RH5_ARATH6.594e-3181.58DEAD-box ATP-dependent RNA helicase 5 OS=Arabidops... [more]
DBP3_PICGU8.632e-2368.42ATP-dependent RNA helicase DBP3 OS=Pichia guillier... [more]
DBP3_USTMA1.127e-2267.11ATP-dependent RNA helicase DBP3 OS=Ustilago maydis... [more]
DBP3_PHANO2.512e-2264.47ATP-dependent RNA helicase DBP3 OS=Phaeosphaeria n... [more]
DBP3_PICST3.280e-2264.47ATP-dependent RNA helicase DBP3 OS=Pichia stipitis... [more]
DBP3_BOTFB3.280e-2263.16ATP-dependent RNA helicase dbp3 OS=Botryotinia fuc... [more]
DBP3_SCLS14.284e-2263.16ATP-dependent RNA helicase dbp3 OS=Sclerotinia scl... [more]
DBP3_GIBZE4.284e-2264.47ATP-dependent RNA helicase DBP3 OS=Gibberella zeae... [more]
DBP3_ASPCL4.284e-2265.79ATP-dependent RNA helicase dbp3 OS=Aspergillus cla... [more]

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Properties
Property NameValue
Genbank descriptionC02006D10SK IF1 Citrus clementina cDNA clone C02006D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288877 ID=CX288877; Name=CX288877; organism=Citrus clementina; type=EST; length=231bp
GTCTTGAAAATATGCTGCGGCGAAGTGGTTGGAAGGTCGCTGCAATACAT
GGTAAGAAAGCACAGCATGAACGTACAAAGTCACTGTCATTATTCAAGGA
GGGAACTTGTCCATTGATGGTTGCTACTGACGTTGCTGCTCGAGGATTGG
ATATTCCAGATGTTGAAGTAGTTATTAACTATTCTTTCCCTTTAACCACG
GAGGATTATGTTCACAGAATTGGTAGGACTG
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