CX288938

Overview
NameCX288938
Unique NameCX288938
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length269
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288938 vs. ExPASy Swiss-Prot
Match: GMD1_ARATH (GDP-mannose 4,6 dehydratase 1 OS=Arabidopsis thaliana GN=GMD1 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 4.238e-38
Identity = 73/89 (82.02%), Postives = 83/89 (93.26%), Query Frame = 2
Query:    2 VATEESHTVEEFLEVAFGYVRLNWKDHVVIDKRYFRPAEVDNLKGDSSMARKVLGWKPRVGFEQLVKMMGDEDIELAKREKVLVDAGYM 268
            VATEESHTV+EFL+V+FGYV LNWKDHV IDKRYFRP EVDNLKGD+S A+++LGWKP+VGFE+LVKMM DED+ELAKREKVL DAGYM
Sbjct:  267 VATEESHTVKEFLDVSFGYVGLNWKDHVEIDKRYFRPTEVDNLKGDASKAKEMLGWKPKVGFEKLVKMMVDEDLELAKREKVLADAGYM 355          
BLAST of CX288938 vs. ExPASy Swiss-Prot
Match: GMD2_ARATH (GDP-mannose 4,6 dehydratase 2 OS=Arabidopsis thaliana GN=MUR1 PE=1 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 2.747e-37
Identity = 72/89 (80.90%), Postives = 84/89 (94.38%), Query Frame = 2
Query:    2 VATEESHTVEEFLEVAFGYVRLNWKDHVVIDKRYFRPAEVDNLKGDSSMARKVLGWKPRVGFEQLVKMMGDEDIELAKREKVLVDAGYM 268
            VATEE HTVEEFL+V+FGY+ LNWKD+V ID+RYFRPAEVDNL+GD+S A++VLGWKP+VGFE+LVKMM DED+ELAKREKVLVDAGYM
Sbjct:  279 VATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQGDASKAKEVLGWKPQVGFEKLVKMMVDEDLELAKREKVLVDAGYM 367          
BLAST of CX288938 vs. ExPASy Swiss-Prot
Match: GM4D_PSEAE (GDP-mannose 4,6-dehydratase OS=Pseudomonas aeruginosa GN=gca PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.267e-14
Identity = 35/80 (43.75%), Postives = 55/80 (68.75%), Query Frame = 2
Query:    2 VATEESHTVEEFLEVAFGYVRLNWKDHVVIDKRYFRPAEVDNLKGDSSMARKVLGWKPRVGFEQLVKMMGDEDIELAKRE 241
            VAT  + TV +  ++AF +V L+++D + ID  +FRPAEVD L G+ + A++VLGWKPR   ++L++MM + D+    RE
Sbjct:  244 VATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWKPRTSLDELIRMMVEADLRRVSRE 323          
BLAST of CX288938 vs. ExPASy Swiss-Prot
Match: GMDS_MOUSE (GDP-mannose 4,6 dehydratase OS=Mus musculus GN=Gmds PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.373e-12
Identity = 38/95 (40.00%), Postives = 56/95 (58.95%), Query Frame = 2
Query:    2 VATEESHTVEEFLEVAFGYV--RLNW---------------KDHVVIDKRYFRPAEVDNLKGDSSMARKVLGWKPRVGFEQLVKMMGDEDIELAK 235
            +AT E H+V EF+E +F ++   + W               K HV +D +Y+RP EVD L+GD S A++ L WKPRV F++LV+ M   D+EL +
Sbjct:  273 IATGEVHSVREFVEKSFMHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYYRPTEVDFLQGDCSKAQQKLNWKPRVAFDELVREMVQADVELMR 367          
BLAST of CX288938 vs. ExPASy Swiss-Prot
Match: GMDS_CRIGR (GDP-mannose 4,6 dehydratase OS=Cricetulus griseus GN=GMDS PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.373e-12
Identity = 38/95 (40.00%), Postives = 56/95 (58.95%), Query Frame = 2
Query:    2 VATEESHTVEEFLEVAFGYV--RLNW---------------KDHVVIDKRYFRPAEVDNLKGDSSMARKVLGWKPRVGFEQLVKMMGDEDIELAK 235
            +AT E H+V EF+E +F ++   + W               K HV +D +Y+RP EVD L+GD S A++ L WKPRV F++LV+ M   D+EL +
Sbjct:  273 IATGEVHSVREFVEKSFMHIGKTIVWEGKNENEVGRCKETGKIHVTVDLKYYRPTEVDFLQGDCSKAQQKLNWKPRVAFDELVREMVQADVELMR 367          
BLAST of CX288938 vs. ExPASy Swiss-Prot
Match: GMDS_HUMAN (GDP-mannose 4,6 dehydratase OS=Homo sapiens GN=GMDS PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.058e-12
Identity = 37/95 (38.95%), Postives = 54/95 (56.84%), Query Frame = 2
Query:    2 VATEESHTVEEFLEVAF-----------------GYVRLNWKDHVVIDKRYFRPAEVDNLKGDSSMARKVLGWKPRVGFEQLVKMMGDEDIELAK 235
            +AT E H+V EF+E +F                 G  +   K HV +D +Y+RP EVD L+GD + A++ L WKPRV F++LV+ M   D+EL +
Sbjct:  273 IATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYYRPTEVDFLQGDCTKAKQKLNWKPRVAFDELVREMVHADVELMR 367          
BLAST of CX288938 vs. ExPASy Swiss-Prot
Match: GMDS_DROME (GDP-mannose 4,6 dehydratase OS=Drosophila melanogaster GN=Gmd PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.162e-11
Identity = 38/99 (38.38%), Postives = 55/99 (55.56%), Query Frame = 2
Query:    2 VATEESHTVEEFLEVAFGYV--RLNWKD---------------HVVIDKRYFRPAEVDNLKGDSSMARKVLGWKPRVGFEQLVKMMGDEDIELAKREKV 247
            +AT E+H+V EF+E AF ++   + WK                 V I+ +YFRP EVD L+GD+S A + L W P+V F +LV  M   DIEL ++  +
Sbjct:  296 IATGETHSVREFVEAAFKHIDREITWKGKGVDEVGVENGTGIVRVRINPKYFRPTEVDLLQGDASKANRELNWTPKVTFVELVSDMMKADIELMRKNPI 394          
The following BLAST results are available for this feature:
BLAST of CX288938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
GMD1_ARATH4.238e-3882.02GDP-mannose 4,6 dehydratase 1 OS=Arabidopsis thali... [more]
GMD2_ARATH2.747e-3780.90GDP-mannose 4,6 dehydratase 2 OS=Arabidopsis thali... [more]
GM4D_PSEAE4.267e-1443.75GDP-mannose 4,6-dehydratase OS=Pseudomonas aerugin... [more]
GMDS_MOUSE1.373e-1240.00GDP-mannose 4,6 dehydratase OS=Mus musculus GN=Gmd... [more]
GMDS_CRIGR1.373e-1240.00GDP-mannose 4,6 dehydratase OS=Cricetulus griseus ... [more]
GMDS_HUMAN3.058e-1238.95GDP-mannose 4,6 dehydratase OS=Homo sapiens GN=GMD... [more]
GMDS_DROME1.162e-1138.38GDP-mannose 4,6 dehydratase OS=Drosophila melanoga... [more]
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Properties
Property NameValue
Genbank descriptionC02007B07SK IF1 Citrus clementina cDNA clone C02007B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288938 ID=CX288938; Name=CX288938; organism=Citrus clementina; type=EST; length=269bp
GGTGGCGACGGAGGAGTCGCATACAGTGGAGGAGTTTTTGGAGGTCGCGT
TTGGGTATGTGAGGTTGAATTGGAAGGATCATGTGGTGATCGATAAGAGG
TATTTTAGGCCAGCTGAGGTTGATAATTTGAAGGGGGATTCAAGCATGGC
CAGGAAAGTGCTTGGCTGGAAGCCTCGAGTTGGGTTTGAGCAGTTGGTGA
AGATGATGGGTGATGAAGATATTGAATTGGCTAAAAGAGAGAAAGTTCTT
GTTGATGCTGGATACATGG
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