CX288938
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288938 vs. ExPASy Swiss-Prot
Match: GMD1_ARATH (GDP-mannose 4,6 dehydratase 1 OS=Arabidopsis thaliana GN=GMD1 PE=2 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 4.238e-38 Identity = 73/89 (82.02%), Postives = 83/89 (93.26%), Query Frame = 2 Query: 2 VATEESHTVEEFLEVAFGYVRLNWKDHVVIDKRYFRPAEVDNLKGDSSMARKVLGWKPRVGFEQLVKMMGDEDIELAKREKVLVDAGYM 268 VATEESHTV+EFL+V+FGYV LNWKDHV IDKRYFRP EVDNLKGD+S A+++LGWKP+VGFE+LVKMM DED+ELAKREKVL DAGYM Sbjct: 267 VATEESHTVKEFLDVSFGYVGLNWKDHVEIDKRYFRPTEVDNLKGDASKAKEMLGWKPKVGFEKLVKMMVDEDLELAKREKVLADAGYM 355
BLAST of CX288938 vs. ExPASy Swiss-Prot
Match: GMD2_ARATH (GDP-mannose 4,6 dehydratase 2 OS=Arabidopsis thaliana GN=MUR1 PE=1 SV=3) HSP 1 Score: 153.68 bits (387), Expect = 2.747e-37 Identity = 72/89 (80.90%), Postives = 84/89 (94.38%), Query Frame = 2 Query: 2 VATEESHTVEEFLEVAFGYVRLNWKDHVVIDKRYFRPAEVDNLKGDSSMARKVLGWKPRVGFEQLVKMMGDEDIELAKREKVLVDAGYM 268 VATEE HTVEEFL+V+FGY+ LNWKD+V ID+RYFRPAEVDNL+GD+S A++VLGWKP+VGFE+LVKMM DED+ELAKREKVLVDAGYM Sbjct: 279 VATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQGDASKAKEVLGWKPQVGFEKLVKMMVDEDLELAKREKVLVDAGYM 367
BLAST of CX288938 vs. ExPASy Swiss-Prot
Match: GM4D_PSEAE (GDP-mannose 4,6-dehydratase OS=Pseudomonas aeruginosa GN=gca PE=1 SV=2) HSP 1 Score: 76.6406 bits (187), Expect = 4.267e-14 Identity = 35/80 (43.75%), Postives = 55/80 (68.75%), Query Frame = 2 Query: 2 VATEESHTVEEFLEVAFGYVRLNWKDHVVIDKRYFRPAEVDNLKGDSSMARKVLGWKPRVGFEQLVKMMGDEDIELAKRE 241 VAT + TV + ++AF +V L+++D + ID +FRPAEVD L G+ + A++VLGWKPR ++L++MM + D+ RE Sbjct: 244 VATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWKPRTSLDELIRMMVEADLRRVSRE 323
BLAST of CX288938 vs. ExPASy Swiss-Prot
Match: GMDS_MOUSE (GDP-mannose 4,6 dehydratase OS=Mus musculus GN=Gmds PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 1.373e-12 Identity = 38/95 (40.00%), Postives = 56/95 (58.95%), Query Frame = 2 Query: 2 VATEESHTVEEFLEVAFGYV--RLNW---------------KDHVVIDKRYFRPAEVDNLKGDSSMARKVLGWKPRVGFEQLVKMMGDEDIELAK 235 +AT E H+V EF+E +F ++ + W K HV +D +Y+RP EVD L+GD S A++ L WKPRV F++LV+ M D+EL + Sbjct: 273 IATGEVHSVREFVEKSFMHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYYRPTEVDFLQGDCSKAQQKLNWKPRVAFDELVREMVQADVELMR 367
BLAST of CX288938 vs. ExPASy Swiss-Prot
Match: GMDS_CRIGR (GDP-mannose 4,6 dehydratase OS=Cricetulus griseus GN=GMDS PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 1.373e-12 Identity = 38/95 (40.00%), Postives = 56/95 (58.95%), Query Frame = 2 Query: 2 VATEESHTVEEFLEVAFGYV--RLNW---------------KDHVVIDKRYFRPAEVDNLKGDSSMARKVLGWKPRVGFEQLVKMMGDEDIELAK 235 +AT E H+V EF+E +F ++ + W K HV +D +Y+RP EVD L+GD S A++ L WKPRV F++LV+ M D+EL + Sbjct: 273 IATGEVHSVREFVEKSFMHIGKTIVWEGKNENEVGRCKETGKIHVTVDLKYYRPTEVDFLQGDCSKAQQKLNWKPRVAFDELVREMVQADVELMR 367
BLAST of CX288938 vs. ExPASy Swiss-Prot
Match: GMDS_HUMAN (GDP-mannose 4,6 dehydratase OS=Homo sapiens GN=GMDS PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 3.058e-12 Identity = 37/95 (38.95%), Postives = 54/95 (56.84%), Query Frame = 2 Query: 2 VATEESHTVEEFLEVAF-----------------GYVRLNWKDHVVIDKRYFRPAEVDNLKGDSSMARKVLGWKPRVGFEQLVKMMGDEDIELAK 235 +AT E H+V EF+E +F G + K HV +D +Y+RP EVD L+GD + A++ L WKPRV F++LV+ M D+EL + Sbjct: 273 IATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYYRPTEVDFLQGDCTKAKQKLNWKPRVAFDELVREMVHADVELMR 367
BLAST of CX288938 vs. ExPASy Swiss-Prot
Match: GMDS_DROME (GDP-mannose 4,6 dehydratase OS=Drosophila melanogaster GN=Gmd PE=1 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 1.162e-11 Identity = 38/99 (38.38%), Postives = 55/99 (55.56%), Query Frame = 2 Query: 2 VATEESHTVEEFLEVAFGYV--RLNWKD---------------HVVIDKRYFRPAEVDNLKGDSSMARKVLGWKPRVGFEQLVKMMGDEDIELAKREKV 247 +AT E+H+V EF+E AF ++ + WK V I+ +YFRP EVD L+GD+S A + L W P+V F +LV M DIEL ++ + Sbjct: 296 IATGETHSVREFVEAAFKHIDREITWKGKGVDEVGVENGTGIVRVRINPKYFRPTEVDLLQGDASKANRELNWTPKVTFVELVSDMMKADIELMRKNPI 394 The following BLAST results are available for this feature:
BLAST of CX288938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX288938 ID=CX288938; Name=CX288938; organism=Citrus clementina; type=EST; length=269bpback to top |