CX290918
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX290918 vs. ExPASy Swiss-Prot
Match: LSM1_SCHPO (U6 snRNA-associated Sm-like protein LSm1 OS=Schizosaccharomyces pombe GN=lsm1 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 2.120e-13 Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = 2 Query: 83 STSLATYLDKKIXXXXXXXXXXXXXXXSFDQFANVVLEGACERIIVGDLYCDIPLSLYVIRGENVVLIGELDLEKE 310 S SL Y+D+K+ SFDQFAN++L+ ERI V D+Y DI +Y++RGENVVL+GELDL+KE Sbjct: 13 SGSLVDYVDRKVIVVLRDGKKLIGILRSFDQFANLMLQYTIERIYVDDMYGDIDRGVYIVRGENVVLLGELDLDKE 88
BLAST of CX290918 vs. ExPASy Swiss-Prot
Match: LSM1_DICDI (Probable U6 snRNA-associated Sm-like protein LSm1 OS=Dictyostelium discoideum GN=lsm1 PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 1.519e-11 Identity = 34/77 (44.16%), Postives = 47/77 (61.04%), Query Frame = 2 Query: 80 LSTSLATYLDKKIXXXXXXXXXXXXXXXSFDQFANVVLEGACERIIVGDLYCDIPLSLYVIRGENVVLIGELDLEKE 310 +S+ L +DKK+ +FDQFAN+VL+ ERI VGD Y D L L+ IRG+NVV++GE+D +KE Sbjct: 1 MSSGLGDEVDKKLIVVLRDGRKFIGIMRTFDQFANIVLQDTIERIYVGDCYSDKNLGLFFIRGDNVVILGEIDPDKE 77
BLAST of CX290918 vs. ExPASy Swiss-Prot
Match: LSM1_MOUSE (U6 snRNA-associated Sm-like protein LSm1 OS=Mus musculus GN=Lsm1 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 1.984e-11 Identity = 37/76 (48.68%), Postives = 45/76 (59.21%), Query Frame = 2 Query: 83 STSLATYLDKKIXXXXXXXXXXXXXXXSFDQFANVVLEGACERIIVGDLYCDIPLSLYVIRGENVVLIGELDLEKE 310 + SL +DKK S DQFAN+VL ERI VG Y DIP ++V+RGENVVL+GE+DLEKE Sbjct: 7 TASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLLGEIDLEKE 82
BLAST of CX290918 vs. ExPASy Swiss-Prot
Match: LSM1_HUMAN (U6 snRNA-associated Sm-like protein LSm1 OS=Homo sapiens GN=LSM1 PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 1.984e-11 Identity = 37/76 (48.68%), Postives = 45/76 (59.21%), Query Frame = 2 Query: 83 STSLATYLDKKIXXXXXXXXXXXXXXXSFDQFANVVLEGACERIIVGDLYCDIPLSLYVIRGENVVLIGELDLEKE 310 + SL +DKK S DQFAN+VL ERI VG Y DIP ++V+RGENVVL+GE+DLEKE Sbjct: 7 TASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLLGEIDLEKE 82
BLAST of CX290918 vs. ExPASy Swiss-Prot
Match: LSM1_BOVIN (U6 snRNA-associated Sm-like protein LSm1 OS=Bos taurus GN=LSM1 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 1.984e-11 Identity = 37/76 (48.68%), Postives = 45/76 (59.21%), Query Frame = 2 Query: 83 STSLATYLDKKIXXXXXXXXXXXXXXXSFDQFANVVLEGACERIIVGDLYCDIPLSLYVIRGENVVLIGELDLEKE 310 + SL +DKK S DQFAN+VL ERI VG Y DIP ++V+RGENVVL+GE+DLEKE Sbjct: 7 TASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLLGEIDLEKE 82 The following BLAST results are available for this feature:
BLAST of CX290918 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX290918 ID=CX290918; Name=CX290918; organism=Citrus clementina; type=EST; length=330bpback to top |