CX291024

Overview
NameCX291024
Unique NameCX291024
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length459
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig414 contig Ccv1_Contig414:260..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX291024 vs. ExPASy Swiss-Prot
Match: ARFB_ARATH (Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 3.522e-37
Identity = 82/157 (52.23%), Postives = 102/157 (64.97%), Query Frame = 1 
Query:    4 ESNESDTAEKSVVWPPSLDDEKIDVVSASRRYGSENWVPPGRHEPVYTDLLSGFGANADPSHGFSSPFAD-----AVPVRKSVLDQEGKFNLVARPWSLMPSGPSLKMPESNAKVPVQGGDVNYQVRGNVRYGGFGDYPMLNGNRVEHSHGNWLMPP 459
            ES E D  E SVVW  S DD+K+DVVS SRRYGSENW+   RHEP YTDLLSGFG N DPSHG   PF D     ++P ++ + D EGKF+ +A  W ++ SG SLK+ ES  KVP    D + Q R NV+Y    +YP+LNG   E++ GNW + P
Sbjct:  462 ESVECDAPENSVVWQSSADDDKVDVVSGSRRYGSENWMSSARHEPTYTDLLSGFGTNIDPSHGQRIPFYDHSSSPSMPAKRILSDSEGKFDYLANQWQMIHSGLSLKLHES-PKVPA-ATDASLQGRCNVKY---SEYPVLNGLSTENAGGNWPIRP 613
The following BLAST results are available for this feature:
BLAST of CX291024 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ARFB_ARATH3.522e-3752.23Auxin response factor 2 OS=Arabidopsis thaliana GN... [more]
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Properties
Property NameValue
Genbank descriptionC03003A11SK OF2 Citrus clementina cDNA clone C03003A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291024 ID=CX291024; Name=CX291024; organism=Citrus clementina; type=EST; length=459bp
AGAGAAAGTAACGAGTCTGACACTGCTGAAAAGTCTGTTGTGTGGCCACC
TTCACTTGATGATGAGAAGATTGATGTGGTGTCTGCTTCAAGAAGATATG
GATCAGAGAACTGGGTGCCACCAGGGAGGCATGAACCAGTGTACACTGAT
TTGCTGTCAGGATTTGGAGCAAATGCTGATCCCTCCCATGGGTTTAGTTC
ACCTTTTGCTGATGCAGTTCCAGTAAGAAAAAGTGTACTGGATCAAGAGG
GGAAGTTTAACTTGGTTGCTCGACCATGGTCCTTGATGCCCTCTGGTCCA
TCACTTAAAATGCCAGAGTCTAATGCAAAAGTTCCGGTACAAGGTGGTGA
TGTAAATTATCAAGTGCGTGGTAATGTTAGATATGGCGGGTTTGGTGACT
ATCCCATGCTTAACGGCAATAGAGTTGAGCACTCACATGGAAACTGGTTA
ATGCCCCCC
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