CX291110

Overview
NameCX291110
Unique NameCX291110
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length575
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3545 contig Ccv1_Contig3545:431..1006. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291110 vs. ExPASy Swiss-Prot
Match: SIZ1_ARATH (E3 SUMO-protein ligase SIZ1 OS=Arabidopsis thaliana GN=SIZ1 PE=1 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 5.076e-52
Identity = 111/186 (59.68%), Postives = 134/186 (72.04%), Query Frame = 1
Query:    1 RSESDRREIGDLASWHFPDGSLCAPAGGEDKPKVEMLKHVRQEGVSEGHIGLKLGIRKNRNGLWEVSKPEDMNGSSGSRLQEKFENHDLKVIPMSSSATGSGRDGEDASVNQDVGGTFDFTNTGIEHDSMSLNVDPTYAFTDRNPCAPVGNTEVIVLSDSEDENDLFISSENIYRDNRNDVGGVSF 558
            + ES+RRE+G+L+ WH PDGSLC P+  + K K+EML  V+QEG S+G   LKLGIRKNRNG+WEVSKP + NG S S  QEK    +  +IPMSSSATGSGRDG+DASVNQD  GTFDF   G+E DS+S+NVD  Y F DRN     GN EVIVLSDS+DENDL I+    Y   + D GG++F
Sbjct:  450 KRESERRELGELSQWHAPDGSLC-PSAVDIKRKMEMLP-VKQEGYSDGPAPLKLGIRKNRNGIWEVSKP-NTNGLSSSNRQEKVGYQEKNIIPMSSSATGSGRDGDDASVNQDAIGTFDFVANGMELDSISMNVDSGYNFPDRNQSGEGGNNEVIVLSDSDDENDLVITPGPAYSGCQTD-GGLTF 631          
BLAST of CX291110 vs. ExPASy Swiss-Prot
Match: SIZ1_ORYSJ (E3 SUMO-protein ligase SIZ1 OS=Oryza sativa subsp. japonica GN=SIZ1 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.625e-24
Identity = 75/182 (41.21%), Postives = 97/182 (53.30%), Query Frame = 1
Query:   31 DLASWHFPDGSLCAPAGGED-KPKVEMLKHVRQEGVSEGHIGLKLGIRKNRNGLWEVSKPEDMNGSS--GSRLQEKFENHDL-KVIPMSSSATGSGRDGEDASVNQDVGGTFDFT--NTGIEHDSMSLNVDPTYAFTDRNPCAPVGNTEVIVLSDSEDENDLFISSENIYRDNRNDVGGVSF 558
            +L+ WH PDG+LC P   ED KP ++       EG S+G   LK+GI++N NG+WEVS   D    S  G+R+Q       L  ++ MS+S T S RDGED SVNQ+     D +  N   E DS SLN       TD  P      T+VIVLSDS++END  +    +Y DN     G  F
Sbjct:  456 ELSQWHMPDGTLCNPK--EDVKPAMQNGNEQMMEGTSDGQKSLKIGIKRNPNGIWEVSSKADDKKPSVVGNRMQNNSGFRALNNIMHMSNSPTSSYRDGEDPSVNQESNRHVDLSLNNGNNEFDSFSLNFGQA-CNTDDRPQQQHNATDVIVLSDSDEENDAMVCPPAVY-DNTTTANGSGF 633          
BLAST of CX291110 vs. ExPASy Swiss-Prot
Match: SIZ2_ORYSJ (E3 SUMO-protein ligase SIZ2 OS=Oryza sativa subsp. japonica GN=SIZ2 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.228e-15
Identity = 59/177 (33.33%), Postives = 94/177 (53.11%), Query Frame = 1
Query:   22 EIGDLASWHFPDGSLCAPAGGEDKPKVEMLK-HVRQEGVSEGHIG-LKLGIRKNRNGLWEVSKPEDMNGSSGSRLQEKFENHDLKVIPMSSSATGSGRDGEDASVNQDVGGTFDFTNTGIEHDSMSLNVDPTYAFTDRNPCAPVGNTEVIVLSDSEDENDLFISSENIYRDNRNDVG 546
            E+  LA WH PDG+LC P     KP + ++K  +++E +SE   G LKLGIR+N NG WE++K  D N      +++  EN    V+  S++   + ++G    +     G FD   + I +D  S  +D  +      P AP    +VIVLSDS+D+N + +S  ++   + +D G
Sbjct:  463 ELKGLAQWHLPDGTLCMPTDTRSKPNIRIVKQEIKEEPLSEETGGRLKLGIRRNNNGQWEINKRLDSNNGQNGYIED--EN---CVVSASNTDDENSKNG----IYNPEPGQFDQLTSNI-YDLDSSPMDAHF------PPAPT-EQDVIVLSDSDDDNVMVLSPGDVNFSSAHDNG 622          
The following BLAST results are available for this feature:
BLAST of CX291110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SIZ1_ARATH5.076e-5259.68E3 SUMO-protein ligase SIZ1 OS=Arabidopsis thalian... [more]
SIZ1_ORYSJ2.625e-2441.21E3 SUMO-protein ligase SIZ1 OS=Oryza sativa subsp.... [more]
SIZ2_ORYSJ2.228e-1533.33E3 SUMO-protein ligase SIZ2 OS=Oryza sativa subsp.... [more]
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Properties
Property NameValue
Genbank descriptionC03004C01SK OF2 Citrus clementina cDNA clone C03004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291110 ID=CX291110; Name=CX291110; organism=Citrus clementina; type=EST; length=575bp
AGAAGCGAAAGTGACCGTCGGGAAATTGGAGATTTAGCGTCCTGGCACTT
TCCTGATGGTTCTCTCTGTGCTCCTGCTGGCGGGGAGGATAAACCAAAAG
TGGAAATGTTGAAGCATGTTAGGCAGGAAGGTGTTTCAGAAGGTCATATT
GGTTTGAAACTTGGAATCAGGAAGAATCGCAACGGGCTGTGGGAAGTTAG
CAAACCTGAAGACATGAATGGCTCTTCTGGTAGTAGATTACAGGAGAAGT
TTGAAAATCATGATCTGAAAGTCATCCCAATGAGCAGCAGCGCTACTGGA
AGTGGTAGGGATGGTGAAGATGCAAGCGTAAATCAGGATGTTGGTGGAAC
CTTCGATTTCACCAACACTGGAATAGAGCATGATTCTATGTCTTTGAATG
TTGACCCGACGTACGCATTTACTGACAGAAATCCATGTGCACCGGTTGGC
AACACAGAAGTTATTGTTCTTAGTGATTCTGAAGATGAGAATGACCTCTT
CATATCTTCTGAAAACATATATAGGGACAACCGAAATGATGTCGGTGGGG
TTTCTTTTTCTGTGCCCTCTGCGGG
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