CX291118

Overview
NameCX291118
Unique NameCX291118
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length605
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291118 vs. ExPASy Swiss-Prot
Match: SIN3_ARATH (Paired amphipathic helix protein Sin3 OS=Arabidopsis thaliana GN=SIN3 PE=1 SV=2)

HSP 1 Score: 312.768 bits (800), Expect = 8.729e-85
Identity = 156/201 (77.61%), Postives = 168/201 (83.58%), Query Frame = 3
Query:    3 NVTTKRVEELLEKINNNTIKTDGPIRVEDHFTALNLRCIERLYGDHGLDVMDVLRKNASLALPVILTRLKQKQEEWARCRSDFNKVWAEIYSKNYHKSLDHRSFYFKQQDSKSLGAKALSAXXXXXXXXXXXXDDVLLAIAAGNRRSIVPHLEFEYSDPDIHEDLYQLIKYSCGEMCTTEQLDKVMKIWTTFLEPMLGVPS 605
            N TTK VEELL KIN+N +KT+ PIRVEDH TALNLRCIERLYGDHGLDVMDVL+KN SLALPVILTRLKQKQEEWARCRSDF+KVWAEIY+KNY+KSLDHRSFYFKQQDSK L  KAL A            DD LLA AAGNR SI P LEF+Y D D+HEDLYQLIKYSC EMC+TEQLDKVMKIWTTF+E + GVPS
Sbjct:  526 NSTTKHVEELLTKINSNELKTNSPIRVEDHLTALNLRCIERLYGDHGLDVMDVLKKNVSLALPVILTRLKQKQEEWARCRSDFDKVWAEIYAKNYYKSLDHRSFYFKQQDSKKLSMKALLA-EIKEITEKKREDDSLLAFAAGNRLSISPDLEFDYPDHDLHEDLYQLIKYSCAEMCSTEQLDKVMKIWTTFVEQIFGVPS 725          
BLAST of CX291118 vs. ExPASy Swiss-Prot
Match: SIN3B_MOUSE (Paired amphipathic helix protein Sin3b OS=Mus musculus GN=Sin3b PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 3.056e-21
Identity = 64/177 (36.16%), Postives = 95/177 (53.67%), Query Frame = 3
Query:    3 NVTTKRV-EELLEKINNNTIKTDGPIRVEDHF----TALNLRCIERLYGDHGLDVMDVLRKNASLALPVILTRLKQKQEEWARCRSDFNKVWAEIYSKNYHKSLDHRSFYFKQQDSKSLGAKALSAXXXXXXXXXXXXDDVLLAIAAG-NRRSIVPHLEFEYSDPDIHEDLYQLIKY 515
            N+ T RV E + +K++    +    +R++D        +  R I R+YGD   +V++ L++N + A+PV+L RLK K+EEW   +  FNK+W E Y K Y KSLDH++  FKQ D+K+L +K+L              D+     + G +  S  PHL F Y D  I ED   LI Y
Sbjct:  460 NLATIRVLESVQKKLSRMAPEDQEKLRLDDCLGGTSEVIQRRAIHRIYGDKAPEVIESLKRNPATAVPVVLKRLKAKEEEWREAQQGFNKIWREQYEKAYLKSLDHQAVNFKQNDTKALRSKSL------LNEIESVYDEHQEQHSEGRSAPSSEPHLIFVYEDRQILEDAAALISY 630          
BLAST of CX291118 vs. ExPASy Swiss-Prot
Match: SIN3B_HUMAN (Paired amphipathic helix protein Sin3b OS=Homo sapiens GN=SIN3B PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 6.809e-21
Identity = 64/177 (36.16%), Postives = 93/177 (52.54%), Query Frame = 3
Query:    3 NVTTKRV-EELLEKINNNTIKTDGPIRVEDHF----TALNLRCIERLYGDHGLDVMDVLRKNASLALPVILTRLKQKQEEWARCRSDFNKVWAEIYSKNYHKSLDHRSFYFKQQDSKSLGAKALSAXXXXXXXXXXXXDDVLLAIAAG-NRRSIVPHLEFEYSDPDIHEDLYQLIKY 515
            N+ T RV E + +K++    +     R++D        +  R I R+YGD   ++++ L+KN   A+PV+L RLK K+EEW   +  FNK+W E Y K Y KSLDH++  FKQ D+K+L +K+L              D+     + G +  S  PHL F Y D  I ED   LI Y
Sbjct:  501 NLATIRVLESVQKKLSRMAPEDQEKFRLDDSLGGTSEVIQRRAIYRIYGDKAPEIIESLKKNPVTAVPVVLKRLKAKEEEWREAQQGFNKIWREQYEKAYLKSLDHQAVNFKQNDTKALRSKSL------LNEIESVYDEHQEQHSEGRSAPSSEPHLIFVYEDRQILEDAAALISY 671          
BLAST of CX291118 vs. ExPASy Swiss-Prot
Match: SIN3A_MOUSE (Paired amphipathic helix protein Sin3a OS=Mus musculus GN=Sin3a PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 2.587e-20
Identity = 64/205 (31.22%), Postives = 102/205 (49.76%), Query Frame = 3
Query:    3 NVTTKRVEELLEK-INNNTIKTDGPIRVEDHF----TALNLRCIERLYGDHGLDVMDVLRKNASLALPVILTRLKQKQEEWARCRSDFNKVWAEIYSKNYHKSLDHRSFYFKQQDSKSLGAKA-LSAXXXXXXXXXXXXDDVLLAIAAGNRRSIVPHLEFEYSDPDIHEDLYQLIKYSCGEMCTTEQLD--KVMKIWTTFLEPML 593
            N+ T RV E ++K ++  + +     R+++        ++ + ++R+Y D   D++D LRKN S+A+P++L RLK K+EEW   +  FNKVW E   K Y KSLDH+   FKQ D+K L +K+ L+              +    +  G      PHL   Y D  I ED   LI +        ++ D  K+ +I   F+  +L
Sbjct:  627 NLATIRVLEAIQKKLSRLSAEEQAKFRLDNTLGGTSEVIHRKALQRIYADKAADIIDGLRKNPSIAVPIVLKRLKMKEEEWREAQRGFNKVWREQNEKYYLKSLDHQGINFKQNDTKVLRSKSLLNEIESIYDERQEQATEENAGVPVG------PHLSLAYEDKQILEDAAALIIHHVKRQTGIQKEDKYKIKQIMHHFIPDLL 825          
BLAST of CX291118 vs. ExPASy Swiss-Prot
Match: SIN3A_HUMAN (Paired amphipathic helix protein Sin3a OS=Homo sapiens GN=SIN3A PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 2.587e-20
Identity = 64/205 (31.22%), Postives = 102/205 (49.76%), Query Frame = 3
Query:    3 NVTTKRVEELLEK-INNNTIKTDGPIRVEDHF----TALNLRCIERLYGDHGLDVMDVLRKNASLALPVILTRLKQKQEEWARCRSDFNKVWAEIYSKNYHKSLDHRSFYFKQQDSKSLGAKA-LSAXXXXXXXXXXXXDDVLLAIAAGNRRSIVPHLEFEYSDPDIHEDLYQLIKYSCGEMCTTEQLD--KVMKIWTTFLEPML 593
            N+ T RV E ++K ++  + +     R+++        ++ + ++R+Y D   D++D LRKN S+A+P++L RLK K+EEW   +  FNKVW E   K Y KSLDH+   FKQ D+K L +K+ L+              +    +  G      PHL   Y D  I ED   LI +        ++ D  K+ +I   F+  +L
Sbjct:  626 NLATIRVLEAIQKKLSRLSAEEQAKFRLDNTLGGTSEVIHRKALQRIYADKAADIIDGLRKNPSIAVPIVLKRLKMKEEEWREAQRGFNKVWREQNEKYYLKSLDHQGINFKQNDTKVLRSKSLLNEIESIYDERQEQATEENAGVPVG------PHLSLAYEDKQILEDAAALIIHHVKRQTGIQKEDKYKIKQIMHHFIPDLL 824          
BLAST of CX291118 vs. ExPASy Swiss-Prot
Match: SIN3_YEAST (Transcriptional regulatory protein SIN3 OS=Saccharomyces cerevisiae GN=SIN3 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.771e-14
Identity = 43/122 (35.25%), Postives = 69/122 (56.56%), Query Frame = 3
Query:    9 TTKRVEELLEKINNNTIKTDGPIRVEDHF--TALNL--RCIERLYG-DHGLDVMDVLRKNASLALPVILTRLKQKQEEWARCRSDFNKVWAEIYSKNYHKSLDHRSFYFKQQDSKSLGAKAL 359
            T + +E ++ KI N T       ++      T++ +  + I ++Y  + G +++D L ++ ++  PV+L RLKQK EEW R + ++NKVW E+  K + KSLDH    FKQ D K L  K L
Sbjct:  827 TIQCLETIVNKIENMTENEKANFKLPPGLGHTSMTIYKKVIRKVYDKERGFEIIDALHEHPAVTAPVVLKRLKQKDEEWRRAQREWNKVWRELEQKVFFKSLDHLGLTFKQADKKLLTTKQL 948          
BLAST of CX291118 vs. ExPASy Swiss-Prot
Match: PST1_SCHPO (Paired amphipathic helix protein pst1 OS=Schizosaccharomyces pombe GN=pst1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.053e-13
Identity = 48/169 (28.40%), Postives = 86/169 (50.89%), Query Frame = 3
Query:  111 RCIERLYG-DHGLDVMDVLRKNASLALPVILTRLKQKQEEWARCRSDFNKVWAEIYSKNYHKSLDHRSFYFKQQDSKSLGAKALSAXXXXXXXXXXXXDDVLLAIAAGNRRSIVPHLE--FEYSDPDIHEDLYQL--IKYSCGEMCTTEQLDKVMKIWTTFLEPMLGVP 602
            + I+++YG +H   +++ L+KN S+ +P++L RLK+K  EW   ++ +N++W +I  KN+++SLDH+   FK  D KS   K L +                + ++ G    + P  +  F Y DP+I  D+ +L  +    G   + E  +K+     +FL     VP
Sbjct:  710 KVIKKVYGKEHAQQIIENLQKNPSVTIPIVLERLKKKDREWRSLQNHWNELWHDIEEKNFYRSLDHQGVSFKSVDKKSTTPKFLIS------ELRNLAQQQKVELSEG---KVTPSHQFLFSYKDPNIITDIARLFGVFLIHGSTHSAEDNEKMSNFLRSFLSLFFDVP 869          
The following BLAST results are available for this feature:
BLAST of CX291118 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
SIN3_ARATH8.729e-8577.61Paired amphipathic helix protein Sin3 OS=Arabidops... [more]
SIN3B_MOUSE3.056e-2136.16Paired amphipathic helix protein Sin3b OS=Mus musc... [more]
SIN3B_HUMAN6.809e-2136.16Paired amphipathic helix protein Sin3b OS=Homo sap... [more]
SIN3A_MOUSE2.587e-2031.22Paired amphipathic helix protein Sin3a OS=Mus musc... [more]
SIN3A_HUMAN2.587e-2031.22Paired amphipathic helix protein Sin3a OS=Homo sap... [more]
SIN3_YEAST2.771e-1435.25Transcriptional regulatory protein SIN3 OS=Sacchar... [more]
PST1_SCHPO1.053e-1328.40Paired amphipathic helix protein pst1 OS=Schizosac... [more]
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Properties
Property NameValue
Genbank descriptionC03004C11SK OF2 Citrus clementina cDNA clone C03004C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291118 ID=CX291118; Name=CX291118; organism=Citrus clementina; type=EST; length=605bp
TTAATGTAACTACCAAACGTGTGGAAGAACTGTTAGAAAAGATTAATAAT
AATACAATCAAAACAGATGGCCCTATTCGTGTTGAAGATCACTTCACAGC
TCTAAATCTAAGGTGTATTGAGCGGTTGTATGGTGATCACGGACTTGATG
TGATGGACGTATTGCGGAAGAATGCTTCTCTAGCTCTGCCAGTTATATTG
ACACGATTGAAGCAGAAACAAGAAGAGTGGGCCAGATGCCGTTCTGATTT
TAACAAAGTTTGGGCTGAAATTTACTCCAAGAATTATCATAAATCTCTTG
ATCATCGTAGCTTCTATTTCAAACAGCAGGACTCAAAGAGCTTGGGTGCA
AAAGCATTGTCGGCGGAGATCAAAGAAATCAGTGAGAAGAAGCGCAAGGA
AGATGACGTGCTTCTTGCCATTGCTGCTGGAAACAGGCGGTCTATTGTTC
CACATTTGGAATTTGAGTATTCAGATCCTGACATCCATGAAGATTTGTAT
CAGCTTATTAAATATTCATGTGGGGAAATGTGTACAACTGAACAGTTGGA
CAAAGTAATGAAGATTTGGACAACCTTCTTGGAACCAATGCTTGGAGTTC
CTTCT
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