CX291118
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX291118 vs. ExPASy Swiss-Prot
Match: SIN3_ARATH (Paired amphipathic helix protein Sin3 OS=Arabidopsis thaliana GN=SIN3 PE=1 SV=2) HSP 1 Score: 312.768 bits (800), Expect = 8.729e-85 Identity = 156/201 (77.61%), Postives = 168/201 (83.58%), Query Frame = 3 Query: 3 NVTTKRVEELLEKINNNTIKTDGPIRVEDHFTALNLRCIERLYGDHGLDVMDVLRKNASLALPVILTRLKQKQEEWARCRSDFNKVWAEIYSKNYHKSLDHRSFYFKQQDSKSLGAKALSAXXXXXXXXXXXXDDVLLAIAAGNRRSIVPHLEFEYSDPDIHEDLYQLIKYSCGEMCTTEQLDKVMKIWTTFLEPMLGVPS 605 N TTK VEELL KIN+N +KT+ PIRVEDH TALNLRCIERLYGDHGLDVMDVL+KN SLALPVILTRLKQKQEEWARCRSDF+KVWAEIY+KNY+KSLDHRSFYFKQQDSK L KAL A DD LLA AAGNR SI P LEF+Y D D+HEDLYQLIKYSC EMC+TEQLDKVMKIWTTF+E + GVPS Sbjct: 526 NSTTKHVEELLTKINSNELKTNSPIRVEDHLTALNLRCIERLYGDHGLDVMDVLKKNVSLALPVILTRLKQKQEEWARCRSDFDKVWAEIYAKNYYKSLDHRSFYFKQQDSKKLSMKALLA-EIKEITEKKREDDSLLAFAAGNRLSISPDLEFDYPDHDLHEDLYQLIKYSCAEMCSTEQLDKVMKIWTTFVEQIFGVPS 725
BLAST of CX291118 vs. ExPASy Swiss-Prot
Match: SIN3B_MOUSE (Paired amphipathic helix protein Sin3b OS=Mus musculus GN=Sin3b PE=1 SV=2) HSP 1 Score: 101.679 bits (252), Expect = 3.056e-21 Identity = 64/177 (36.16%), Postives = 95/177 (53.67%), Query Frame = 3 Query: 3 NVTTKRV-EELLEKINNNTIKTDGPIRVEDHF----TALNLRCIERLYGDHGLDVMDVLRKNASLALPVILTRLKQKQEEWARCRSDFNKVWAEIYSKNYHKSLDHRSFYFKQQDSKSLGAKALSAXXXXXXXXXXXXDDVLLAIAAG-NRRSIVPHLEFEYSDPDIHEDLYQLIKY 515 N+ T RV E + +K++ + +R++D + R I R+YGD +V++ L++N + A+PV+L RLK K+EEW + FNK+W E Y K Y KSLDH++ FKQ D+K+L +K+L D+ + G + S PHL F Y D I ED LI Y Sbjct: 460 NLATIRVLESVQKKLSRMAPEDQEKLRLDDCLGGTSEVIQRRAIHRIYGDKAPEVIESLKRNPATAVPVVLKRLKAKEEEWREAQQGFNKIWREQYEKAYLKSLDHQAVNFKQNDTKALRSKSL------LNEIESVYDEHQEQHSEGRSAPSSEPHLIFVYEDRQILEDAAALISY 630
BLAST of CX291118 vs. ExPASy Swiss-Prot
Match: SIN3B_HUMAN (Paired amphipathic helix protein Sin3b OS=Homo sapiens GN=SIN3B PE=1 SV=2) HSP 1 Score: 100.523 bits (249), Expect = 6.809e-21 Identity = 64/177 (36.16%), Postives = 93/177 (52.54%), Query Frame = 3 Query: 3 NVTTKRV-EELLEKINNNTIKTDGPIRVEDHF----TALNLRCIERLYGDHGLDVMDVLRKNASLALPVILTRLKQKQEEWARCRSDFNKVWAEIYSKNYHKSLDHRSFYFKQQDSKSLGAKALSAXXXXXXXXXXXXDDVLLAIAAG-NRRSIVPHLEFEYSDPDIHEDLYQLIKY 515 N+ T RV E + +K++ + R++D + R I R+YGD ++++ L+KN A+PV+L RLK K+EEW + FNK+W E Y K Y KSLDH++ FKQ D+K+L +K+L D+ + G + S PHL F Y D I ED LI Y Sbjct: 501 NLATIRVLESVQKKLSRMAPEDQEKFRLDDSLGGTSEVIQRRAIYRIYGDKAPEIIESLKKNPVTAVPVVLKRLKAKEEEWREAQQGFNKIWREQYEKAYLKSLDHQAVNFKQNDTKALRSKSL------LNEIESVYDEHQEQHSEGRSAPSSEPHLIFVYEDRQILEDAAALISY 671
BLAST of CX291118 vs. ExPASy Swiss-Prot
Match: SIN3A_MOUSE (Paired amphipathic helix protein Sin3a OS=Mus musculus GN=Sin3a PE=1 SV=2) HSP 1 Score: 98.5969 bits (244), Expect = 2.587e-20 Identity = 64/205 (31.22%), Postives = 102/205 (49.76%), Query Frame = 3 Query: 3 NVTTKRVEELLEK-INNNTIKTDGPIRVEDHF----TALNLRCIERLYGDHGLDVMDVLRKNASLALPVILTRLKQKQEEWARCRSDFNKVWAEIYSKNYHKSLDHRSFYFKQQDSKSLGAKA-LSAXXXXXXXXXXXXDDVLLAIAAGNRRSIVPHLEFEYSDPDIHEDLYQLIKYSCGEMCTTEQLD--KVMKIWTTFLEPML 593 N+ T RV E ++K ++ + + R+++ ++ + ++R+Y D D++D LRKN S+A+P++L RLK K+EEW + FNKVW E K Y KSLDH+ FKQ D+K L +K+ L+ + + G PHL Y D I ED LI + ++ D K+ +I F+ +L Sbjct: 627 NLATIRVLEAIQKKLSRLSAEEQAKFRLDNTLGGTSEVIHRKALQRIYADKAADIIDGLRKNPSIAVPIVLKRLKMKEEEWREAQRGFNKVWREQNEKYYLKSLDHQGINFKQNDTKVLRSKSLLNEIESIYDERQEQATEENAGVPVG------PHLSLAYEDKQILEDAAALIIHHVKRQTGIQKEDKYKIKQIMHHFIPDLL 825
BLAST of CX291118 vs. ExPASy Swiss-Prot
Match: SIN3A_HUMAN (Paired amphipathic helix protein Sin3a OS=Homo sapiens GN=SIN3A PE=1 SV=2) HSP 1 Score: 98.5969 bits (244), Expect = 2.587e-20 Identity = 64/205 (31.22%), Postives = 102/205 (49.76%), Query Frame = 3 Query: 3 NVTTKRVEELLEK-INNNTIKTDGPIRVEDHF----TALNLRCIERLYGDHGLDVMDVLRKNASLALPVILTRLKQKQEEWARCRSDFNKVWAEIYSKNYHKSLDHRSFYFKQQDSKSLGAKA-LSAXXXXXXXXXXXXDDVLLAIAAGNRRSIVPHLEFEYSDPDIHEDLYQLIKYSCGEMCTTEQLD--KVMKIWTTFLEPML 593 N+ T RV E ++K ++ + + R+++ ++ + ++R+Y D D++D LRKN S+A+P++L RLK K+EEW + FNKVW E K Y KSLDH+ FKQ D+K L +K+ L+ + + G PHL Y D I ED LI + ++ D K+ +I F+ +L Sbjct: 626 NLATIRVLEAIQKKLSRLSAEEQAKFRLDNTLGGTSEVIHRKALQRIYADKAADIIDGLRKNPSIAVPIVLKRLKMKEEEWREAQRGFNKVWREQNEKYYLKSLDHQGINFKQNDTKVLRSKSLLNEIESIYDERQEQATEENAGVPVG------PHLSLAYEDKQILEDAAALIIHHVKRQTGIQKEDKYKIKQIMHHFIPDLL 824
BLAST of CX291118 vs. ExPASy Swiss-Prot
Match: SIN3_YEAST (Transcriptional regulatory protein SIN3 OS=Saccharomyces cerevisiae GN=SIN3 PE=1 SV=2) HSP 1 Score: 78.5666 bits (192), Expect = 2.771e-14 Identity = 43/122 (35.25%), Postives = 69/122 (56.56%), Query Frame = 3 Query: 9 TTKRVEELLEKINNNTIKTDGPIRVEDHF--TALNL--RCIERLYG-DHGLDVMDVLRKNASLALPVILTRLKQKQEEWARCRSDFNKVWAEIYSKNYHKSLDHRSFYFKQQDSKSLGAKAL 359 T + +E ++ KI N T ++ T++ + + I ++Y + G +++D L ++ ++ PV+L RLKQK EEW R + ++NKVW E+ K + KSLDH FKQ D K L K L Sbjct: 827 TIQCLETIVNKIENMTENEKANFKLPPGLGHTSMTIYKKVIRKVYDKERGFEIIDALHEHPAVTAPVVLKRLKQKDEEWRRAQREWNKVWRELEQKVFFKSLDHLGLTFKQADKKLLTTKQL 948
BLAST of CX291118 vs. ExPASy Swiss-Prot
Match: PST1_SCHPO (Paired amphipathic helix protein pst1 OS=Schizosaccharomyces pombe GN=pst1 PE=1 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.053e-13 Identity = 48/169 (28.40%), Postives = 86/169 (50.89%), Query Frame = 3 Query: 111 RCIERLYG-DHGLDVMDVLRKNASLALPVILTRLKQKQEEWARCRSDFNKVWAEIYSKNYHKSLDHRSFYFKQQDSKSLGAKALSAXXXXXXXXXXXXDDVLLAIAAGNRRSIVPHLE--FEYSDPDIHEDLYQL--IKYSCGEMCTTEQLDKVMKIWTTFLEPMLGVP 602 + I+++YG +H +++ L+KN S+ +P++L RLK+K EW ++ +N++W +I KN+++SLDH+ FK D KS K L + + ++ G + P + F Y DP+I D+ +L + G + E +K+ +FL VP Sbjct: 710 KVIKKVYGKEHAQQIIENLQKNPSVTIPIVLERLKKKDREWRSLQNHWNELWHDIEEKNFYRSLDHQGVSFKSVDKKSTTPKFLIS------ELRNLAQQQKVELSEG---KVTPSHQFLFSYKDPNIITDIARLFGVFLIHGSTHSAEDNEKMSNFLRSFLSLFFDVP 869 The following BLAST results are available for this feature:
BLAST of CX291118 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX291118 ID=CX291118; Name=CX291118; organism=Citrus clementina; type=EST; length=605bpback to top |