CX291288

Overview
NameCX291288
Unique NameCX291288
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length487
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291288 vs. ExPASy Swiss-Prot
Match: POL_SFV3L (Pro-Pol polyprotein OS=Simian foamy virus type 3 (strain LK3) GN=pol PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 7.556e-15
Identity = 46/140 (32.86%), Postives = 74/140 (52.86%), Query Frame = 2
Query:   65 PFAQWGIDLIGPLPKARGAATHAIVAIDYFTKWVEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFREFCQNLGIELKYCSPAHPQSNGQVEAANKTIKRLLKTRLGAKKGAWVDELSGVLWAYRTTH 484
            PF ++ ID IGPLP + G   H +V +D  T +V +      +   T   +  N++    +P  + +D G  F + +F ++ +N GI+L++ +P HPQS+G+VE  N  IKRLL   L  +   W D L  V  A   ++
Sbjct:  871 PFDKFFIDYIGPLPPSNGYL-HVLVVVDSMTGFVWLYPTKAPSTSATVKAL--NMLTSIAVPKVIHSDQGAAFTSATFADWAKNKGIQLEFSTPYHPQSSGKVERKNSDIKRLLTKLLVGRPAKWYDLLPVVQLALNNSY 1007          
BLAST of CX291288 vs. ExPASy Swiss-Prot
Match: POL_SFV1 (Pro-Pol polyprotein OS=Simian foamy virus type 1 GN=pol PE=1 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 1.289e-14
Identity = 51/156 (32.69%), Postives = 79/156 (50.64%), Query Frame = 2
Query:   44 TSMTSP---------WPFAQWGIDLIGPLPKARGAATHAIVAIDYFTKWVEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFREFCQNLGIELKYCSPAHPQSNGQVEAANKTIKRLLKTRLGAKKGAWVDELSGVLWAYRTTH 484
            T++TSP          PF ++ ID IGPLP + G   H +V +D  T +V +      +   T   +  N++    IP  L +D G  F + +F ++ +  GI+L++ +P HPQS+G+VE  N  IKRLL   L  +   W D L  V  A   ++
Sbjct:  855 TNLTSPPILRPVKPLKPFDKFYIDYIGPLPPSNGYL-HVLVVVDSMTGFVWLYPTKAPSTSATVKAL--NMLTSIAIPKVLHSDQGAAFTSSTFADWAKEKGIQLEFSTPYHPQSSGKVERKNSDIKRLLTKLLIGRPAKWYDLLPVVQLALNNSY 1007          
BLAST of CX291288 vs. ExPASy Swiss-Prot
Match: POL_FFV (Pro-Pol polyprotein OS=Feline foamy virus GN=pol PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.396e-14
Identity = 46/140 (32.86%), Postives = 71/140 (50.71%), Query Frame = 2
Query:   65 PFAQWGIDLIGPLPKARGAATHAIVAIDYFTKWVEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFREFCQNLGIELKYCSPAHPQSNGQVEAANKTIKRLLKTRLGAKKGAWVDELSGVLWAYRTTH 484
            PF ++ +D IGPLP + G   H +V +D  T +  +      T K T   +  N +    IP  L +D G  F +  F ++ +   I+L++ +P HPQS+G+VE  N  IK+LL   L  +   W + +S V  A   TH
Sbjct:  873 PFDKFYMDYIGPLPPSEGYV-HVLVVVDAATGFTWLYPTKAQTSKATIKVL--NHLTGLAIPKVLHSDQGSAFTSEEFAQWAKERNIQLEFSTPYHPQSSGKVERKNSEIKKLLTKLLVGRPLKWYNLISSVQLALNNTH 1009          
BLAST of CX291288 vs. ExPASy Swiss-Prot
Match: POL_SFVCP (Pro-Pol polyprotein OS=Simian foamy virus (isolate chimpanzee) GN=pol PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.425e-13
Identity = 50/160 (31.25%), Postives = 79/160 (49.38%), Query Frame = 2
Query:    8 LANFSNRPPEKLTSMTSPW-PFAQWGIDLIGPLPKARGAATHAIVAIDYFTKWVEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFREFCQNLGIELKYCSPAHPQSNGQVEAANKTIKRLLKTRLGAKKGAWVDELSGVLWAYRTTH 484
            + N SN+    +     P  PF ++ ID IGPLP ++G   + +V +D  T +  +      +   T   +  N++    IP  + +D G  F + +F E+ +  GI L++ +P HPQS+G+VE  N  IKRLL   L  +   W D L  V  A   T+
Sbjct:  852 ITNASNKTSGPILRPDRPQKPFDKFFIDYIGPLPPSQGYL-YVLVIVDGMTGFTWLYPTKAPSTSATVKSL--NVLTSIAIPKVIHSDQGAAFTSSTFAEWAKERGIHLEFSTPYHPQSSGKVERKNSDIKRLLTKLLVGRPTKWYDLLPVVQLALNNTY 1008          
BLAST of CX291288 vs. ExPASy Swiss-Prot
Match: POL_FOAMV (Pro-Pol polyprotein OS=Human spumaretrovirus GN=pol PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 7.072e-13
Identity = 49/160 (30.63%), Postives = 77/160 (48.12%), Query Frame = 2
Query:    8 LANFSNRPPEKLTSMTSPW-PFAQWGIDLIGPLPKARGAATHAIVAIDYFTKWVEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFREFCQNLGIELKYCSPAHPQSNGQVEAANKTIKRLLKTRLGAKKGAWVDELSGVLWAYRTTH 484
            + N SN+    +     P  PF ++ ID IGPLP ++G   + +V +D  T +  +      +   T   +  N++    IP  + +D G  F + +F E+ +  GI L++ +P HPQS  +VE  N  IKRLL   L  +   W D L  V  A   T+
Sbjct:  852 ITNASNKASGPILRPDRPQKPFDKFFIDYIGPLPPSQGYL-YVLVVVDGMTGFTWLYPTKAPSTSATVKSL--NVLTSIAIPKVIHSDQGAAFTSSTFAEWAKERGIHLEFSTPYHPQSGSKVERKNSDIKRLLTKLLVGRPTKWYDLLPVVQLALNNTY 1008          
BLAST of CX291288 vs. ExPASy Swiss-Prot
Match: RTF23_SCHPO (Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe GN=Tf2-11 PE=4 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.334e-11
Identity = 37/137 (27.01%), Postives = 68/137 (49.64%), Query Frame = 2
Query:   65 PFAQWGIDLIGPLPKARGAATHAIVAIDYFTKW-VEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFREFCQNLGIELKYCSPAHPQSNGQVEAANKTIKRLLKTRLGAKKGAWVDELSGVLWAY 472
            P+    +D I  LP++ G      V +D F+K  + V     IT ++T     + ++  +G P  ++ DN   F + ++++F       +K+  P  PQ++GQ E  N+T+++LL+         WVD +S V  +Y
Sbjct:  983 PWESLSMDFITALPESSGYNA-LFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSY 1118          
BLAST of CX291288 vs. ExPASy Swiss-Prot
Match: RTF22_SCHPO (Retrotransposable element Tf2 155 kDa protein type 2 OS=Schizosaccharomyces pombe GN=Tf2-7 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.334e-11
Identity = 37/137 (27.01%), Postives = 68/137 (49.64%), Query Frame = 2
Query:   65 PFAQWGIDLIGPLPKARGAATHAIVAIDYFTKW-VEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFREFCQNLGIELKYCSPAHPQSNGQVEAANKTIKRLLKTRLGAKKGAWVDELSGVLWAY 472
            P+    +D I  LP++ G      V +D F+K  + V     IT ++T     + ++  +G P  ++ DN   F + ++++F       +K+  P  PQ++GQ E  N+T+++LL+         WVD +S V  +Y
Sbjct:  983 PWESLSMDFITALPESSGYNA-LFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSY 1118          
BLAST of CX291288 vs. ExPASy Swiss-Prot
Match: RTF21_SCHPO (Retrotransposable element Tf2 155 kDa protein type 1 OS=Schizosaccharomyces pombe GN=Tf2-1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.334e-11
Identity = 37/137 (27.01%), Postives = 68/137 (49.64%), Query Frame = 2
Query:   65 PFAQWGIDLIGPLPKARGAATHAIVAIDYFTKW-VEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFREFCQNLGIELKYCSPAHPQSNGQVEAANKTIKRLLKTRLGAKKGAWVDELSGVLWAY 472
            P+    +D I  LP++ G      V +D F+K  + V     IT ++T     + ++  +G P  ++ DN   F + ++++F       +K+  P  PQ++GQ E  N+T+++LL+         WVD +S V  +Y
Sbjct:  983 PWESLSMDFITALPESSGYNA-LFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSY 1118          
BLAST of CX291288 vs. ExPASy Swiss-Prot
Match: POL_XMRV3 (Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP35) GN=gag-pol PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.971e-11
Identity = 47/140 (33.57%), Postives = 65/140 (46.43%), Query Frame = 2
Query:   65 PFAQWGIDLIGPLPKARGAATHAIVAIDYFTKWVEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFREFCQNLGIELKYCSPAHPQSNGQVEAANKTIKR-LLKTRLGAKKGAWVDELSGVLWAYRTT 481
            P   W +D     P   G   + +V +D F+ WVE     R T K  T  +  ++  R+G+P  L +DNG  F +   +     LGI+ K      PQS+GQVE  N+TIK  L K  L +    WV  L   L+  R T
Sbjct: 1446 PGTHWEVDFTEVKPGLYGYK-YLLVFVDTFSGWVEAFPTKRETAKVVTKKLLEDIFPRFGMPQVLGSDNGPAFASQVSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLASGTRDWVLLLPLALYRARNT 1584          
BLAST of CX291288 vs. ExPASy Swiss-Prot
Match: POL_MLVFF (Pol polyprotein OS=Friend murine leukemia virus (isolate FB29) GN=pol PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.880e-11
Identity = 51/157 (32.48%), Postives = 69/157 (43.95%), Query Frame = 2
Query:   14 NFSNRPPEKLTSMTSPWPFAQWGIDLIGPLPKARGAATHAIVAIDYFTKWVEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFREFCQNLGIELKYCSPAHPQSNGQVEAANKTIKR-LLKTRLGAKKGAWVDELSGVLWAYRTT 481
            N S    ++ T +    P   W ID     P   G   + +V ID F+ WVE     + T K  T  +   +  R+G+P  L TDNG  F +   +     LG++ K      PQS+GQVE  N+TIK  L K  L      WV  L   L+  R T
Sbjct:  897 NASKSAVKQGTRVRGHRPGTHWEIDFTEVKPGLYGYK-YLLVFIDTFSGWVEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRARNT 1052          
The following BLAST results are available for this feature:
BLAST of CX291288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
POL_SFV3L7.556e-1532.86Pro-Pol polyprotein OS=Simian foamy virus type 3 (... [more]
POL_SFV11.289e-1432.69Pro-Pol polyprotein OS=Simian foamy virus type 1 G... [more]
POL_FFV6.396e-1432.86Pro-Pol polyprotein OS=Feline foamy virus GN=pol P... [more]
POL_SFVCP1.425e-1331.25Pro-Pol polyprotein OS=Simian foamy virus (isolate... [more]
POL_FOAMV7.072e-1330.63Pro-Pol polyprotein OS=Human spumaretrovirus GN=po... [more]
RTF23_SCHPO1.334e-1127.01Retrotransposable element Tf2 155 kDa protein type... [more]
RTF22_SCHPO1.334e-1127.01Retrotransposable element Tf2 155 kDa protein type... [more]
RTF21_SCHPO1.334e-1127.01Retrotransposable element Tf2 155 kDa protein type... [more]
POL_XMRV32.971e-1133.57Gag-Pol polyprotein OS=Xenotropic MuLV-related vir... [more]
POL_MLVFF3.880e-1132.48Pol polyprotein OS=Friend murine leukemia virus (i... [more]

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Properties
Property NameValue
Genbank descriptionC03006C09SK OF2 Citrus clementina cDNA clone C03006C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291288 ID=CX291288; Name=CX291288; organism=Citrus clementina; type=EST; length=487bp
GCAGAGTTTGGCAAATTTCTCTAACCGACCGCCAGAGAAGCTCACCTCCA
TGACCTCCCCCTGGCCATTTGCTCAATGGGGAATTGATCTGATCGGCCCA
TTGCCAAAGGCACGAGGAGCTGCAACACATGCAATAGTTGCTATAGATTA
CTTCACGAAGTGGGTAGAGGTAGAAGCCCTTAGCAGGATCACAGAGAAGA
AAACAACAGACTTCGTGTGGAGAAACCTGGTCTGTCGATACGGGATCCCT
TATGCCTTGGTAACGGACAATGGCAGGCAGTTCGATAATCACAGCTTCCG
GGAGTTCTGCCAGAACCTCGGGATAGAGCTGAAGTATTGCTCGCCTGCTC
ACCCTCAATCGAATGGACAAGTAGAAGCAGCCAACAAGACCATCAAGAGA
CTTTTGAAAACCAGGCTTGGAGCAAAAAAGGGTGCGTGGGTTGACGAGCT
GTCAGGTGTGCTATGGGCATACAGAACAACCCACAAA
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