CX291288
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX291288 vs. ExPASy Swiss-Prot
Match: POL_SFV3L (Pro-Pol polyprotein OS=Simian foamy virus type 3 (strain LK3) GN=pol PE=3 SV=2) HSP 1 Score: 79.7221 bits (195), Expect = 7.556e-15 Identity = 46/140 (32.86%), Postives = 74/140 (52.86%), Query Frame = 2 Query: 65 PFAQWGIDLIGPLPKARGAATHAIVAIDYFTKWVEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFREFCQNLGIELKYCSPAHPQSNGQVEAANKTIKRLLKTRLGAKKGAWVDELSGVLWAYRTTH 484 PF ++ ID IGPLP + G H +V +D T +V + + T + N++ +P + +D G F + +F ++ +N GI+L++ +P HPQS+G+VE N IKRLL L + W D L V A ++ Sbjct: 871 PFDKFFIDYIGPLPPSNGYL-HVLVVVDSMTGFVWLYPTKAPSTSATVKAL--NMLTSIAVPKVIHSDQGAAFTSATFADWAKNKGIQLEFSTPYHPQSSGKVERKNSDIKRLLTKLLVGRPAKWYDLLPVVQLALNNSY 1007
BLAST of CX291288 vs. ExPASy Swiss-Prot
Match: POL_SFV1 (Pro-Pol polyprotein OS=Simian foamy virus type 1 GN=pol PE=1 SV=3) HSP 1 Score: 78.9518 bits (193), Expect = 1.289e-14 Identity = 51/156 (32.69%), Postives = 79/156 (50.64%), Query Frame = 2 Query: 44 TSMTSP---------WPFAQWGIDLIGPLPKARGAATHAIVAIDYFTKWVEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFREFCQNLGIELKYCSPAHPQSNGQVEAANKTIKRLLKTRLGAKKGAWVDELSGVLWAYRTTH 484 T++TSP PF ++ ID IGPLP + G H +V +D T +V + + T + N++ IP L +D G F + +F ++ + GI+L++ +P HPQS+G+VE N IKRLL L + W D L V A ++ Sbjct: 855 TNLTSPPILRPVKPLKPFDKFYIDYIGPLPPSNGYL-HVLVVVDSMTGFVWLYPTKAPSTSATVKAL--NMLTSIAIPKVLHSDQGAAFTSSTFADWAKEKGIQLEFSTPYHPQSSGKVERKNSDIKRLLTKLLIGRPAKWYDLLPVVQLALNNSY 1007
BLAST of CX291288 vs. ExPASy Swiss-Prot
Match: POL_FFV (Pro-Pol polyprotein OS=Feline foamy virus GN=pol PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 6.396e-14 Identity = 46/140 (32.86%), Postives = 71/140 (50.71%), Query Frame = 2 Query: 65 PFAQWGIDLIGPLPKARGAATHAIVAIDYFTKWVEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFREFCQNLGIELKYCSPAHPQSNGQVEAANKTIKRLLKTRLGAKKGAWVDELSGVLWAYRTTH 484 PF ++ +D IGPLP + G H +V +D T + + T K T + N + IP L +D G F + F ++ + I+L++ +P HPQS+G+VE N IK+LL L + W + +S V A TH Sbjct: 873 PFDKFYMDYIGPLPPSEGYV-HVLVVVDAATGFTWLYPTKAQTSKATIKVL--NHLTGLAIPKVLHSDQGSAFTSEEFAQWAKERNIQLEFSTPYHPQSSGKVERKNSEIKKLLTKLLVGRPLKWYNLISSVQLALNNTH 1009
BLAST of CX291288 vs. ExPASy Swiss-Prot
Match: POL_SFVCP (Pro-Pol polyprotein OS=Simian foamy virus (isolate chimpanzee) GN=pol PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 1.425e-13 Identity = 50/160 (31.25%), Postives = 79/160 (49.38%), Query Frame = 2 Query: 8 LANFSNRPPEKLTSMTSPW-PFAQWGIDLIGPLPKARGAATHAIVAIDYFTKWVEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFREFCQNLGIELKYCSPAHPQSNGQVEAANKTIKRLLKTRLGAKKGAWVDELSGVLWAYRTTH 484 + N SN+ + P PF ++ ID IGPLP ++G + +V +D T + + + T + N++ IP + +D G F + +F E+ + GI L++ +P HPQS+G+VE N IKRLL L + W D L V A T+ Sbjct: 852 ITNASNKTSGPILRPDRPQKPFDKFFIDYIGPLPPSQGYL-YVLVIVDGMTGFTWLYPTKAPSTSATVKSL--NVLTSIAIPKVIHSDQGAAFTSSTFAEWAKERGIHLEFSTPYHPQSSGKVERKNSDIKRLLTKLLVGRPTKWYDLLPVVQLALNNTY 1008
BLAST of CX291288 vs. ExPASy Swiss-Prot
Match: POL_FOAMV (Pro-Pol polyprotein OS=Human spumaretrovirus GN=pol PE=1 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 7.072e-13 Identity = 49/160 (30.63%), Postives = 77/160 (48.12%), Query Frame = 2 Query: 8 LANFSNRPPEKLTSMTSPW-PFAQWGIDLIGPLPKARGAATHAIVAIDYFTKWVEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFREFCQNLGIELKYCSPAHPQSNGQVEAANKTIKRLLKTRLGAKKGAWVDELSGVLWAYRTTH 484 + N SN+ + P PF ++ ID IGPLP ++G + +V +D T + + + T + N++ IP + +D G F + +F E+ + GI L++ +P HPQS +VE N IKRLL L + W D L V A T+ Sbjct: 852 ITNASNKASGPILRPDRPQKPFDKFFIDYIGPLPPSQGYL-YVLVVVDGMTGFTWLYPTKAPSTSATVKSL--NVLTSIAIPKVIHSDQGAAFTSSTFAEWAKERGIHLEFSTPYHPQSGSKVERKNSDIKRLLTKLLVGRPTKWYDLLPVVQLALNNTY 1008
BLAST of CX291288 vs. ExPASy Swiss-Prot
Match: RTF23_SCHPO (Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe GN=Tf2-11 PE=4 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 1.334e-11 Identity = 37/137 (27.01%), Postives = 68/137 (49.64%), Query Frame = 2 Query: 65 PFAQWGIDLIGPLPKARGAATHAIVAIDYFTKW-VEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFREFCQNLGIELKYCSPAHPQSNGQVEAANKTIKRLLKTRLGAKKGAWVDELSGVLWAY 472 P+ +D I LP++ G V +D F+K + V IT ++T + ++ +G P ++ DN F + ++++F +K+ P PQ++GQ E N+T+++LL+ WVD +S V +Y Sbjct: 983 PWESLSMDFITALPESSGYNA-LFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSY 1118
BLAST of CX291288 vs. ExPASy Swiss-Prot
Match: RTF22_SCHPO (Retrotransposable element Tf2 155 kDa protein type 2 OS=Schizosaccharomyces pombe GN=Tf2-7 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 1.334e-11 Identity = 37/137 (27.01%), Postives = 68/137 (49.64%), Query Frame = 2 Query: 65 PFAQWGIDLIGPLPKARGAATHAIVAIDYFTKW-VEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFREFCQNLGIELKYCSPAHPQSNGQVEAANKTIKRLLKTRLGAKKGAWVDELSGVLWAY 472 P+ +D I LP++ G V +D F+K + V IT ++T + ++ +G P ++ DN F + ++++F +K+ P PQ++GQ E N+T+++LL+ WVD +S V +Y Sbjct: 983 PWESLSMDFITALPESSGYNA-LFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSY 1118
BLAST of CX291288 vs. ExPASy Swiss-Prot
Match: RTF21_SCHPO (Retrotransposable element Tf2 155 kDa protein type 1 OS=Schizosaccharomyces pombe GN=Tf2-1 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 1.334e-11 Identity = 37/137 (27.01%), Postives = 68/137 (49.64%), Query Frame = 2 Query: 65 PFAQWGIDLIGPLPKARGAATHAIVAIDYFTKW-VEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFREFCQNLGIELKYCSPAHPQSNGQVEAANKTIKRLLKTRLGAKKGAWVDELSGVLWAY 472 P+ +D I LP++ G V +D F+K + V IT ++T + ++ +G P ++ DN F + ++++F +K+ P PQ++GQ E N+T+++LL+ WVD +S V +Y Sbjct: 983 PWESLSMDFITALPESSGYNA-LFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSY 1118
BLAST of CX291288 vs. ExPASy Swiss-Prot
Match: POL_XMRV3 (Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP35) GN=gag-pol PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 2.971e-11 Identity = 47/140 (33.57%), Postives = 65/140 (46.43%), Query Frame = 2 Query: 65 PFAQWGIDLIGPLPKARGAATHAIVAIDYFTKWVEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFREFCQNLGIELKYCSPAHPQSNGQVEAANKTIKR-LLKTRLGAKKGAWVDELSGVLWAYRTT 481 P W +D P G + +V +D F+ WVE R T K T + ++ R+G+P L +DNG F + + LGI+ K PQS+GQVE N+TIK L K L + WV L L+ R T Sbjct: 1446 PGTHWEVDFTEVKPGLYGYK-YLLVFVDTFSGWVEAFPTKRETAKVVTKKLLEDIFPRFGMPQVLGSDNGPAFASQVSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLASGTRDWVLLLPLALYRARNT 1584
BLAST of CX291288 vs. ExPASy Swiss-Prot
Match: POL_MLVFF (Pol polyprotein OS=Friend murine leukemia virus (isolate FB29) GN=pol PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 3.880e-11 Identity = 51/157 (32.48%), Postives = 69/157 (43.95%), Query Frame = 2 Query: 14 NFSNRPPEKLTSMTSPWPFAQWGIDLIGPLPKARGAATHAIVAIDYFTKWVEVEALSRITEKKTTDFVWRNLVCRYGIPYALVTDNGRQFDNHSFREFCQNLGIELKYCSPAHPQSNGQVEAANKTIKR-LLKTRLGAKKGAWVDELSGVLWAYRTT 481 N S ++ T + P W ID P G + +V ID F+ WVE + T K T + + R+G+P L TDNG F + + LG++ K PQS+GQVE N+TIK L K L WV L L+ R T Sbjct: 897 NASKSAVKQGTRVRGHRPGTHWEIDFTEVKPGLYGYK-YLLVFIDTFSGWVEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRARNT 1052 The following BLAST results are available for this feature:
BLAST of CX291288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
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Sequences
The
following sequences are available for this feature:
EST sequence >CX291288 ID=CX291288; Name=CX291288; organism=Citrus clementina; type=EST; length=487bpback to top |