CX291434

Overview
NameCX291434
Unique NameCX291434
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig361 contig Ccv1_Contig361:1..706. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291434 vs. ExPASy Swiss-Prot
Match: POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=4 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.169e-38
Identity = 86/226 (38.05%), Postives = 136/226 (60.18%), Query Frame = 1
Query:    7 FYGQQGIALGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVPF-VFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDRIPHVIYYASIILNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIVILTDHAALKYLLTKKDAKARLIRWVLLLQEFDLEFK-IRKAQKCCGRPLSRL 678
            F  Q+   LGH+++  GI+ +  K++ I   P P   +E+++FLG  G+YR+FI +F+ +++P+   L K++     +     AF+KLK L++  PI++ P+++  F L  DASD A+GAVL Q      H + Y S  LN+ ++NYST EKE+LA+V+A + FR YL+G    I +DH  L +L   KD  ++L RW + L EFD + K I+  + C    LSR+
Sbjct:  403 FLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGAVLSQD----GHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQPLSWLYRMKDPNSKLTRWRVKLSEFDFDIKYIKGKENCVADALSRI 624          
BLAST of CX291434 vs. ExPASy Swiss-Prot
Match: POL5_DROME (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster GN=pol PE=4 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.310e-38
Identity = 84/211 (39.81%), Postives = 129/211 (61.14%), Query Frame = 1
Query:   31 LGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLL-----------AKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDRIPHVIYYASIILNDAQLNYSTTEKEMLAVVFALEKFRSYLIGC-KIVILTDHAALKYLLTKKDAKARLIRWVLLLQEFDLE 627
            LG+I+++ GI+ D  KV  IS +PPP +V+E++ FLG   +YR+FI+D++KV++PL NL            +  VP   D++ L +F  LK +L SS I+  P ++ PF L  DAS++A+GAVL Q        I Y S  LN  + NY+T EKEMLA++++L+  R+YL G   I + TDH  L + L  ++  A+L RW   ++E++ E
Sbjct:  327 LGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFPCFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSLDNLRAYLYGAGTIKVYTDHQPLTFALGNRNFNAKLKRWKARIEEYNCE 537          
BLAST of CX291434 vs. ExPASy Swiss-Prot
Match: POL2_DROME (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=4 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.455e-34
Identity = 84/211 (39.81%), Postives = 128/211 (60.66%), Query Frame = 1
Query:    7 FYGQQGIALGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVPFVFDD-SCLVAFEKLKQLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDRIPHVIYYASIILNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIVILTDHAALKYLLTKKDAKARLIRWVLLLQEFDLEFKI 636
            F  ++   LGHI++  GI+ +  KV  I + P P   +E+R+FLG  G+YR+FI +++ +++P+ + L K           + AFEKLK L+   PI+Q P++   F L  DAS+ A+GAVL Q      H I + S  LND +LNYS  EKE+LA+V+A + FR YL+G + +I +DH  L++L   K+  A+L RW + L E+  +FKI
Sbjct:  402 FLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTTDASNLALGAVLSQN----GHPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFLIASDHQPLRWLHNLKEPGAKLERWRVRLSEY--QFKI 606          
BLAST of CX291434 vs. ExPASy Swiss-Prot
Match: POL4_DROME (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster GN=POL PE=4 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.708e-30
Identity = 82/234 (35.04%), Postives = 120/234 (51.28%), Query Frame = 1
Query:    7 FYGQQGIALGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDRIPHVIYYASIILNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIVILTDHAALKYLLTKKDAKARLIRWVLLLQEFDLEFKIRKAQ-KCCGRPLSRLYFDHYRAIT 705
            F+  +   LGH  + KGI  D  K D+I N P P      R F+    +YRRFIK+F+  SR +  L  K+VPF + D C  AF  LK  L +  ++Q P++S  F +  DAS  A GAVL Q  +     + YAS      + N STTE+E+ A+ +A+  FR Y+ G    + TDH  L YL +  +  ++L R  L L+E++   +  K +       LSR+     + IT
Sbjct:  511 FFMHEVTFLGHKCTDKGILPDDKKYDVIQNYPVPHDADSARRFVAFCNYYRRFIKNFADYSRHITRLCKKNVPFEWTDECQKAFIHLKSQLINPTLLQYPDFSKEFCITTDASKQACGAVLTQNHNGHQLPVAYASRAFTKGESNKSTTEQELAAIHWAIIHFRPYIYGKHFTVKTDHRPLTYLFSMVNPSSKLTRIRLELEEYNFTVEYLKGKDNHVADALSRITIKELKDIT 744          
BLAST of CX291434 vs. ExPASy Swiss-Prot
Match: RTF23_SCHPO (Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe GN=Tf2-11 PE=4 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.992e-29
Identity = 82/216 (37.96%), Postives = 120/216 (55.56%), Query Frame = 1
Query:    7 FYGQQGIALGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDRIPHV-IYYASIILNDAQLNYSTTEKEMLAVVFALEKFRSYLIGC--KIVILTDHAALKYLLTKKD--AKARLIRWVLLLQEFDLEFKIR 639
            F+  Q   +G+ IS KG    +  +D +     PK  +E+R FLG   + R+FI   S+++ PL NLL KDV + +  +   A E +KQ L S P+++  ++S    L  DASD AVGAVL Q+ D   +  + Y S  ++ AQLNYS ++KEMLA++ +L+ +R YL        ILTDH  L   +T +      RL RW L LQ+F+ E   R
Sbjct:  603 FHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYR 818          
BLAST of CX291434 vs. ExPASy Swiss-Prot
Match: RTF22_SCHPO (Retrotransposable element Tf2 155 kDa protein type 2 OS=Schizosaccharomyces pombe GN=Tf2-7 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.992e-29
Identity = 82/216 (37.96%), Postives = 120/216 (55.56%), Query Frame = 1
Query:    7 FYGQQGIALGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDRIPHV-IYYASIILNDAQLNYSTTEKEMLAVVFALEKFRSYLIGC--KIVILTDHAALKYLLTKKD--AKARLIRWVLLLQEFDLEFKIR 639
            F+  Q   +G+ IS KG    +  +D +     PK  +E+R FLG   + R+FI   S+++ PL NLL KDV + +  +   A E +KQ L S P+++  ++S    L  DASD AVGAVL Q+ D   +  + Y S  ++ AQLNYS ++KEMLA++ +L+ +R YL        ILTDH  L   +T +      RL RW L LQ+F+ E   R
Sbjct:  603 FHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYR 818          
BLAST of CX291434 vs. ExPASy Swiss-Prot
Match: RTF21_SCHPO (Retrotransposable element Tf2 155 kDa protein type 1 OS=Schizosaccharomyces pombe GN=Tf2-1 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.992e-29
Identity = 82/216 (37.96%), Postives = 120/216 (55.56%), Query Frame = 1
Query:    7 FYGQQGIALGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDRIPHV-IYYASIILNDAQLNYSTTEKEMLAVVFALEKFRSYLIGC--KIVILTDHAALKYLLTKKD--AKARLIRWVLLLQEFDLEFKIR 639
            F+  Q   +G+ IS KG    +  +D +     PK  +E+R FLG   + R+FI   S+++ PL NLL KDV + +  +   A E +KQ L S P+++  ++S    L  DASD AVGAVL Q+ D   +  + Y S  ++ AQLNYS ++KEMLA++ +L+ +R YL        ILTDH  L   +T +      RL RW L LQ+F+ E   R
Sbjct:  603 FHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYR 818          
BLAST of CX291434 vs. ExPASy Swiss-Prot
Match: POLY_DROME (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster GN=pol PE=4 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.132e-29
Identity = 76/210 (36.19%), Postives = 120/210 (57.14%), Query Frame = 1
Query:    7 FYGQQGIALGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLL-----------AKDVPFVFDDSCLVAFEKLKQLLTSSPII-QPPNWSLPFELMCDASDYAVGAVLGQRVDRIPHVIYYASIILNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCK-IVILTDHAALKYLLTKKDAKARLIRW 597
            F+ +    LG I+S  G + D  KV  I   P P  V +VRSFLG A +YR FIKDF+ ++RP+ ++L           +K +P  F+++   AF++L+ +L S  +I + P++  PF+L  DAS   +GAVL Q    I  +    S  L   + NY+T E+E+LA+V+AL K +++L G + I I TDH  L + +  ++  A++ RW
Sbjct:  378 FFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKYPDFKKPFDLTTDASASGIGAVLSQEGRPITMI----SRTLKQPEQNYATNERELLAIVWALGKLQNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRW 583          
BLAST of CX291434 vs. ExPASy Swiss-Prot
Match: YI31B_YEAST (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-I PE=3 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 4.854e-22
Identity = 71/212 (33.49%), Postives = 108/212 (50.94%), Query Frame = 1
Query:    7 FYGQQGIALGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQ--RVDRIPHVIYYASIILNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIVILTDHAALKYLLTKKDAKARLIRWV--LLLQEFDLEF 630
            F  ++   LG+ I  + I   + K   I + P PKTV++ + FLG   +YRRFI + SK+++P+   +     +        A EKLK  L +SP++ P N    + L  DAS   +GAVL +    +++  V+ Y S  L  AQ NY   E E+L ++ AL  FR  L G    + TDH +L  L  K +   R+ RW+  L   +F LE+
Sbjct:  811 FASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPIQLFICDKSQWTEKQD--KAIEKLKAALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEPARRVQRWLDDLATYDFTLEY 1020          
BLAST of CX291434 vs. ExPASy Swiss-Prot
Match: YG31B_YEAST (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 8.279e-22
Identity = 70/212 (33.02%), Postives = 108/212 (50.94%), Query Frame = 1
Query:    7 FYGQQGIALGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQ--RVDRIPHVIYYASIILNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIVILTDHAALKYLLTKKDAKARLIRWV--LLLQEFDLEF 630
            F  ++   LG+ I  + I   + K   I + P PKTV++ + FLG   +YRRFI + SK+++P+   +     +        A +KLK  L +SP++ P N    + L  DAS   +GAVL +    +++  V+ Y S  L  AQ NY   E E+L ++ AL  FR  L G    + TDH +L  L  K +   R+ RW+  L   +F LE+
Sbjct:  785 FASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPIQLFICDKSQWTEKQD--KAIDKLKDALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEPARRVQRWLDDLATYDFTLEY 994          
The following BLAST results are available for this feature:
BLAST of CX291434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
POL3_DROME2.169e-3838.05Retrovirus-related Pol polyprotein from transposon... [more]
POL5_DROME6.310e-3839.81Retrovirus-related Pol polyprotein from transposon... [more]
POL2_DROME1.455e-3439.81Retrovirus-related Pol polyprotein from transposon... [more]
POL4_DROME3.708e-3035.04Retrovirus-related Pol polyprotein from transposon... [more]
RTF23_SCHPO6.992e-2937.96Retrotransposable element Tf2 155 kDa protein type... [more]
RTF22_SCHPO6.992e-2937.96Retrotransposable element Tf2 155 kDa protein type... [more]
RTF21_SCHPO6.992e-2937.96Retrotransposable element Tf2 155 kDa protein type... [more]
POLY_DROME9.132e-2936.19Retrovirus-related Pol polyprotein from transposon... [more]
YI31B_YEAST4.854e-2233.49Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomy... [more]
YG31B_YEAST8.279e-2233.02Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomy... [more]

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Properties
Property NameValue
Genbank descriptionC03007H05SK OF2 Citrus clementina cDNA clone C03007H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291434 ID=CX291434; Name=CX291434; organism=Citrus clementina; type=EST; length=706bp
GTGCCATTTTATGGTCAACAAGGTATTGCCCTCGGTCACATCATTTCAAG
CAAAGGTATTGAGGTTGACAAAGCCAAGGTGGATCTCATTTCTAATCTTC
CTCCACCCAAAACAGTCAGAGAAGTAAGATCTTTCCTTGGGCATGCTGGT
TTCTATAGACGTTTCATTAAAGATTTTAGCAAAGTTTCTAGACCCTTATG
CAATCTACTTGCTAAGGATGTACCTTTTGTCTTTGATGATTCATGTCTTG
TGGCGTTTGAAAAATTAAAGCAGTTGTTGACATCATCACCAATCATTCAG
CCCCCAAACTGGAGCTTACCATTTGAGCTCATGTGTGATGCATCTGATTA
TGCAGTAGGAGCAGTTTTAGGACAAAGAGTTGATCGAATTCCTCATGTTA
TTTACTATGCCAGTATAATATTGAATGATGCACAATTGAACTATTCAACT
ACTGAAAAAGAAATGCTAGCAGTAGTGTTTGCATTGGAAAAATTTCGATC
TTATCTCATTGGTTGTAAAATAGTTATACTCACAGATCATGCTGCTCTTA
AATATCTTCTCACAAAGAAAGATGCAAAAGCTAGACTAATTCGTTGGGTG
TTACTTTTGCAGGAATTTGACTTGGAATTCAAGATAAGAAAGGCACAAAA
ATGTTGTGGCAGACCACTCTCTCGTCTCTATTTTGACCATTACAGAGCCA
TTACAT
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