CX291434
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX291434 vs. ExPASy Swiss-Prot
Match: POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=4 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 2.169e-38 Identity = 86/226 (38.05%), Postives = 136/226 (60.18%), Query Frame = 1 Query: 7 FYGQQGIALGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVPF-VFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDRIPHVIYYASIILNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIVILTDHAALKYLLTKKDAKARLIRWVLLLQEFDLEFK-IRKAQKCCGRPLSRL 678 F Q+ LGH+++ GI+ + K++ I P P +E+++FLG G+YR+FI +F+ +++P+ L K++ + AF+KLK L++ PI++ P+++ F L DASD A+GAVL Q H + Y S LN+ ++NYST EKE+LA+V+A + FR YL+G I +DH L +L KD ++L RW + L EFD + K I+ + C LSR+ Sbjct: 403 FLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGAVLSQD----GHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQPLSWLYRMKDPNSKLTRWRVKLSEFDFDIKYIKGKENCVADALSRI 624
BLAST of CX291434 vs. ExPASy Swiss-Prot
Match: POL5_DROME (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster GN=pol PE=4 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 6.310e-38 Identity = 84/211 (39.81%), Postives = 129/211 (61.14%), Query Frame = 1 Query: 31 LGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLL-----------AKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDRIPHVIYYASIILNDAQLNYSTTEKEMLAVVFALEKFRSYLIGC-KIVILTDHAALKYLLTKKDAKARLIRWVLLLQEFDLE 627 LG+I+++ GI+ D KV IS +PPP +V+E++ FLG +YR+FI+D++KV++PL NL + VP D++ L +F LK +L SS I+ P ++ PF L DAS++A+GAVL Q I Y S LN + NY+T EKEMLA++++L+ R+YL G I + TDH L + L ++ A+L RW ++E++ E Sbjct: 327 LGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFPCFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSLDNLRAYLYGAGTIKVYTDHQPLTFALGNRNFNAKLKRWKARIEEYNCE 537
BLAST of CX291434 vs. ExPASy Swiss-Prot
Match: POL2_DROME (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=4 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 1.455e-34 Identity = 84/211 (39.81%), Postives = 128/211 (60.66%), Query Frame = 1 Query: 7 FYGQQGIALGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVPFVFDD-SCLVAFEKLKQLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDRIPHVIYYASIILNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIVILTDHAALKYLLTKKDAKARLIRWVLLLQEFDLEFKI 636 F ++ LGHI++ GI+ + KV I + P P +E+R+FLG G+YR+FI +++ +++P+ + L K + AFEKLK L+ PI+Q P++ F L DAS+ A+GAVL Q H I + S LND +LNYS EKE+LA+V+A + FR YL+G + +I +DH L++L K+ A+L RW + L E+ +FKI Sbjct: 402 FLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTTDASNLALGAVLSQN----GHPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFLIASDHQPLRWLHNLKEPGAKLERWRVRLSEY--QFKI 606
BLAST of CX291434 vs. ExPASy Swiss-Prot
Match: POL4_DROME (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster GN=POL PE=4 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 3.708e-30 Identity = 82/234 (35.04%), Postives = 120/234 (51.28%), Query Frame = 1 Query: 7 FYGQQGIALGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDRIPHVIYYASIILNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIVILTDHAALKYLLTKKDAKARLIRWVLLLQEFDLEFKIRKAQ-KCCGRPLSRLYFDHYRAIT 705 F+ + LGH + KGI D K D+I N P P R F+ +YRRFIK+F+ SR + L K+VPF + D C AF LK L + ++Q P++S F + DAS A GAVL Q + + YAS + N STTE+E+ A+ +A+ FR Y+ G + TDH L YL + + ++L R L L+E++ + K + LSR+ + IT Sbjct: 511 FFMHEVTFLGHKCTDKGILPDDKKYDVIQNYPVPHDADSARRFVAFCNYYRRFIKNFADYSRHITRLCKKNVPFEWTDECQKAFIHLKSQLINPTLLQYPDFSKEFCITTDASKQACGAVLTQNHNGHQLPVAYASRAFTKGESNKSTTEQELAAIHWAIIHFRPYIYGKHFTVKTDHRPLTYLFSMVNPSSKLTRIRLELEEYNFTVEYLKGKDNHVADALSRITIKELKDIT 744
BLAST of CX291434 vs. ExPASy Swiss-Prot
Match: RTF23_SCHPO (Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe GN=Tf2-11 PE=4 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 6.992e-29 Identity = 82/216 (37.96%), Postives = 120/216 (55.56%), Query Frame = 1 Query: 7 FYGQQGIALGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDRIPHV-IYYASIILNDAQLNYSTTEKEMLAVVFALEKFRSYLIGC--KIVILTDHAALKYLLTKKD--AKARLIRWVLLLQEFDLEFKIR 639 F+ Q +G+ IS KG + +D + PK +E+R FLG + R+FI S+++ PL NLL KDV + + + A E +KQ L S P+++ ++S L DASD AVGAVL Q+ D + + Y S ++ AQLNYS ++KEMLA++ +L+ +R YL ILTDH L +T + RL RW L LQ+F+ E R Sbjct: 603 FHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYR 818
BLAST of CX291434 vs. ExPASy Swiss-Prot
Match: RTF22_SCHPO (Retrotransposable element Tf2 155 kDa protein type 2 OS=Schizosaccharomyces pombe GN=Tf2-7 PE=2 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 6.992e-29 Identity = 82/216 (37.96%), Postives = 120/216 (55.56%), Query Frame = 1 Query: 7 FYGQQGIALGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDRIPHV-IYYASIILNDAQLNYSTTEKEMLAVVFALEKFRSYLIGC--KIVILTDHAALKYLLTKKD--AKARLIRWVLLLQEFDLEFKIR 639 F+ Q +G+ IS KG + +D + PK +E+R FLG + R+FI S+++ PL NLL KDV + + + A E +KQ L S P+++ ++S L DASD AVGAVL Q+ D + + Y S ++ AQLNYS ++KEMLA++ +L+ +R YL ILTDH L +T + RL RW L LQ+F+ E R Sbjct: 603 FHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYR 818
BLAST of CX291434 vs. ExPASy Swiss-Prot
Match: RTF21_SCHPO (Retrotransposable element Tf2 155 kDa protein type 1 OS=Schizosaccharomyces pombe GN=Tf2-1 PE=2 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 6.992e-29 Identity = 82/216 (37.96%), Postives = 120/216 (55.56%), Query Frame = 1 Query: 7 FYGQQGIALGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDRIPHV-IYYASIILNDAQLNYSTTEKEMLAVVFALEKFRSYLIGC--KIVILTDHAALKYLLTKKD--AKARLIRWVLLLQEFDLEFKIR 639 F+ Q +G+ IS KG + +D + PK +E+R FLG + R+FI S+++ PL NLL KDV + + + A E +KQ L S P+++ ++S L DASD AVGAVL Q+ D + + Y S ++ AQLNYS ++KEMLA++ +L+ +R YL ILTDH L +T + RL RW L LQ+F+ E R Sbjct: 603 FHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYR 818
BLAST of CX291434 vs. ExPASy Swiss-Prot
Match: POLY_DROME (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster GN=pol PE=4 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 9.132e-29 Identity = 76/210 (36.19%), Postives = 120/210 (57.14%), Query Frame = 1 Query: 7 FYGQQGIALGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLL-----------AKDVPFVFDDSCLVAFEKLKQLLTSSPII-QPPNWSLPFELMCDASDYAVGAVLGQRVDRIPHVIYYASIILNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCK-IVILTDHAALKYLLTKKDAKARLIRW 597 F+ + LG I+S G + D KV I P P V +VRSFLG A +YR FIKDF+ ++RP+ ++L +K +P F+++ AF++L+ +L S +I + P++ PF+L DAS +GAVL Q I + S L + NY+T E+E+LA+V+AL K +++L G + I I TDH L + + ++ A++ RW Sbjct: 378 FFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKYPDFKKPFDLTTDASASGIGAVLSQEGRPITMI----SRTLKQPEQNYATNERELLAIVWALGKLQNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRW 583
BLAST of CX291434 vs. ExPASy Swiss-Prot
Match: YI31B_YEAST (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-I PE=3 SV=2) HSP 1 Score: 104.76 bits (260), Expect = 4.854e-22 Identity = 71/212 (33.49%), Postives = 108/212 (50.94%), Query Frame = 1 Query: 7 FYGQQGIALGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQ--RVDRIPHVIYYASIILNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIVILTDHAALKYLLTKKDAKARLIRWV--LLLQEFDLEF 630 F ++ LG+ I + I + K I + P PKTV++ + FLG +YRRFI + SK+++P+ + + A EKLK L +SP++ P N + L DAS +GAVL + +++ V+ Y S L AQ NY E E+L ++ AL FR L G + TDH +L L K + R+ RW+ L +F LE+ Sbjct: 811 FASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPIQLFICDKSQWTEKQD--KAIEKLKAALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEPARRVQRWLDDLATYDFTLEY 1020
BLAST of CX291434 vs. ExPASy Swiss-Prot
Match: YG31B_YEAST (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G PE=1 SV=3) HSP 1 Score: 103.99 bits (258), Expect = 8.279e-22 Identity = 70/212 (33.02%), Postives = 108/212 (50.94%), Query Frame = 1 Query: 7 FYGQQGIALGHIISSKGIEVDKAKVDLISNLPPPKTVREVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQ--RVDRIPHVIYYASIILNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIVILTDHAALKYLLTKKDAKARLIRWV--LLLQEFDLEF 630 F ++ LG+ I + I + K I + P PKTV++ + FLG +YRRFI + SK+++P+ + + A +KLK L +SP++ P N + L DAS +GAVL + +++ V+ Y S L AQ NY E E+L ++ AL FR L G + TDH +L L K + R+ RW+ L +F LE+ Sbjct: 785 FASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPIQLFICDKSQWTEKQD--KAIDKLKDALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEPARRVQRWLDDLATYDFTLEY 994 The following BLAST results are available for this feature:
BLAST of CX291434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 26
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX291434 ID=CX291434; Name=CX291434; organism=Citrus clementina; type=EST; length=706bpback to top |