CX291463

Overview
NameCX291463
Unique NameCX291463
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11849 contig Ccv1_Contig11849:595..1290. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291463 vs. ExPASy Swiss-Prot
Match: UBE4_ARATH (Probable ubiquitin conjugation factor E4 OS=Arabidopsis thaliana GN=PUB1 PE=1 SV=1)

HSP 1 Score: 421.779 bits (1083), Expect = 1.735e-117
Identity = 207/231 (89.61%), Postives = 223/231 (96.54%), Query Frame = 3
Query:    3 LKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWKIGE 695
            LKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWR+IAK+EEKGVYLNFLNFL+NDSIYLLDESLNKILE+K IEA+MSNTAEWE+RP QERQERTRLFHSQENI+RIDMKLANEDV+MLAFTSE+I APFLLPEM+ERVA+MLNYFLLQLVGPQRKSL+LKDPEKYEFRPKQLLKQIV IYV+LARGDT N+FP AISSDGRSYNEQLF+A ADVL +IGE
Sbjct:  679 LKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRRIAKDEEKGVYLNFLNFLVNDSIYLLDESLNKILEIKQIEADMSNTAEWEQRPTQERQERTRLFHSQENIVRIDMKLANEDVTMLAFTSEEITAPFLLPEMVERVANMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKQLLKQIVRIYVNLARGDTVNIFPGAISSDGRSYNEQLFNAGADVLRRIGE 909          
BLAST of CX291463 vs. ExPASy Swiss-Prot
Match: UBE4B_MOUSE (Ubiquitin conjugation factor E4 B OS=Mus musculus GN=Ube4b PE=1 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 1.112e-39
Identity = 86/232 (37.07%), Postives = 138/232 (59.48%), Query Frame = 3
Query:    3 LKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHL--ARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWKIG 692
            +K Y D+E TG+ ++FYDKF IR++I+ + + LWQ  +H   + +     ++  ++ ++N LIND+ +LLDESL  +  +  ++ EM N  +W++ P  ++Q R       E + R  + LA E V M    ++Q+  PFL PE+  R+A+MLN+ L QL GP+ + L +++PEKY F PK+LL Q+  IY+ L  AR      F  AI+ D RSY+++LF      + K G
Sbjct:  842 MKFYTDVEHTGATSEFYDKFTIRYHISTIFKSLWQNIAHHGTFMEEFNSGKQ--FVRYINMLINDTTFLLDESLESLKRIHEVQEEMKNKEQWDQLPRDQQQARQSQLAQDERVSRSYLALATETVDMFHLLTKQVQKPFLRPELGPRLAAMLNFNLQQLCGPKCRDLKVENPEKYGFEPKKLLDQLTDIYLQLDCAR------FAKAIADDQRSYSKELFEEVISKMRKAG 1065          
BLAST of CX291463 vs. ExPASy Swiss-Prot
Match: UBE4B_HUMAN (Ubiquitin conjugation factor E4 B OS=Homo sapiens GN=UBE4B PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.112e-39
Identity = 86/232 (37.07%), Postives = 138/232 (59.48%), Query Frame = 3
Query:    3 LKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHL--ARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWKIG 692
            +K Y D+E TG+ ++FYDKF IR++I+ + + LWQ  +H   + +     ++  ++ ++N LIND+ +LLDESL  +  +  ++ EM N  +W++ P  ++Q R       E + R  + LA E V M    ++Q+  PFL PE+  R+A+MLN+ L QL GP+ + L +++PEKY F PK+LL Q+  IY+ L  AR      F  AI+ D RSY+++LF      + K G
Sbjct:  971 MKFYTDVEHTGATSEFYDKFTIRYHISTIFKSLWQNIAHHGTFMEEFNSGKQ--FVRYINMLINDTTFLLDESLESLKRIHEVQEEMKNKEQWDQLPRDQQQARQSQLAQDERVSRSYLALATETVDMFHILTKQVQKPFLRPELGPRLAAMLNFNLQQLCGPKCRDLKVENPEKYGFEPKKLLDQLTDIYLQLDCAR------FAKAIADDQRSYSKELFEEVISKMRKAG 1194          
BLAST of CX291463 vs. ExPASy Swiss-Prot
Match: UBE4A_RAT (Ubiquitin conjugation factor E4 A OS=Rattus norvegicus GN=Ube4a PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.578e-38
Identity = 88/238 (36.97%), Postives = 141/238 (59.24%), Query Frame = 3
Query:    3 LKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGV-------YLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWKIGE 695
            +K++VDIEFTG   QF  KFN R  +  +L Y+W   S+R + + +A    K +       +L FLN L+ND+I+LLDE++  + ++K+ + E  +  EWE    + R+E+         + R    ++NE +  L+F + +I + F+ P + ER+ SMLNYFL  LVGP+  +L +KD  +++F+P+QL+  I  IY++L  GD +N F A +  DGRSY+  LF+    VL KI +
Sbjct:  723 IKVFVDIEFTGDPHQFEQKFNYRRPMYPILRYMWGTDSYRESIKDLADYASKNLEAMNPPLFLRFLNLLMNDAIFLLDEAIQYLSKIKIQQIE-KDRGEWESLTPEARREKEAGLQMFGQLARFHNIMSNETIGTLSFLTSEIKSLFVHPFLAERIISMLNYFLQHLVGPKMGALKVKDFSEFDFKPQQLVSDICTIYLNL--GDEEN-FCATVPKDGRSYSPTLFAQTVRVLKKINK 956          
BLAST of CX291463 vs. ExPASy Swiss-Prot
Match: UBE4A_BOVIN (Ubiquitin conjugation factor E4 A OS=Bos taurus GN=UBE4A PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.673e-38
Identity = 87/238 (36.55%), Postives = 142/238 (59.66%), Query Frame = 3
Query:    3 LKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGV-------YLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWKIGE 695
            +K++VDIEFTG   QF  KFN R  +  +L+Y+W   ++R + + +A    K +       +L FLN L+ND+I+LLDE++  + ++K+ + E  +  EW+    + R+E+         + R    ++NE +  LAF + +I + F+ P + ER+ SMLNYFL  LVGP+  +L +KD  +++F+P+QL+  I  IY++L  GD +N F A +  DGRSY+  LF+    VL KI +
Sbjct:  723 IKVFVDIEFTGDPHQFEQKFNYRRPMYPILKYMWGTDTYRESIKDLADYASKNLEAMNPPLFLRFLNLLMNDAIFLLDEAIQYLSKIKIQQIE-KDRGEWDNLTPEARREKEAGLQMFGQLARFHNIMSNETIGTLAFLTSEIKSLFVHPFLAERIISMLNYFLQHLVGPKMGALKVKDFSEFDFKPQQLVSDICTIYLNL--GDEEN-FCATVPKDGRSYSPTLFAQTVRVLKKINK 956          
BLAST of CX291463 vs. ExPASy Swiss-Prot
Match: UBE4A_PONAB (Ubiquitin conjugation factor E4 A OS=Pongo abelii GN=UBE4A PE=2 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 7.970e-38
Identity = 87/238 (36.55%), Postives = 141/238 (59.24%), Query Frame = 3
Query:    3 LKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGV-------YLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWKIGE 695
            +K++VDIEFTG   QF  KFN R  +  +L Y+W   ++R + + +A    K +       +L FLN L+ND+I+LLDE++  + ++K+ + E  +  EW+    + R+E+         + R    ++NE +  LAF + +I + F+ P + ER+ SMLNYFL  LVGP+  +L +KD  +++F+P+QL+  I  IY++L  GD +N F A +  DGRSY+  LF+    VL KI +
Sbjct:  723 IKVFVDIEFTGDPHQFEQKFNYRRPMYPILRYMWGTDTYRESIKDLADYASKNLEAMNPPLFLRFLNLLMNDAIFLLDEAIQYLSKIKIQQIE-KDRGEWDSLTPEARREKEAGLQMFGQLARFHNIMSNETIGTLAFLTSEIKSLFVHPFLAERIISMLNYFLQHLVGPKMGALKVKDFSEFDFKPQQLVSDICTIYLNL--GDEEN-FCATVPKDGRSYSPTLFAQTVRVLKKINK 956          
BLAST of CX291463 vs. ExPASy Swiss-Prot
Match: UBE4A_HUMAN (Ubiquitin conjugation factor E4 A OS=Homo sapiens GN=UBE4A PE=1 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 7.970e-38
Identity = 87/238 (36.55%), Postives = 141/238 (59.24%), Query Frame = 3
Query:    3 LKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGV-------YLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWKIGE 695
            +K++VDIEFTG   QF  KFN R  +  +L Y+W   ++R + + +A    K +       +L FLN L+ND+I+LLDE++  + ++K+ + E  +  EW+    + R+E+         + R    ++NE +  LAF + +I + F+ P + ER+ SMLNYFL  LVGP+  +L +KD  +++F+P+QL+  I  IY++L  GD +N F A +  DGRSY+  LF+    VL KI +
Sbjct:  723 IKVFVDIEFTGDPHQFEQKFNYRRPMYPILRYMWGTDTYRESIKDLADYASKNLEAMNPPLFLRFLNLLMNDAIFLLDEAIQYLSKIKIQQIE-KDRGEWDSLTPEARREKEAGLQMFGQLARFHNIMSNETIGTLAFLTSEIKSLFVHPFLAERIISMLNYFLQHLVGPKMGALKVKDFSEFDFKPQQLVSDICTIYLNL--GDEEN-FCATVPKDGRSYSPTLFAQTVRVLKKINK 956          
BLAST of CX291463 vs. ExPASy Swiss-Prot
Match: UFD2_YEAST (Ubiquitin conjugation factor E4 OS=Saccharomyces cerevisiae GN=UFD2 PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 6.982e-34
Identity = 85/231 (36.80%), Postives = 138/231 (59.74%), Query Frame = 3
Query:    3 LKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLW-QVPSHRNA--WRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWE--RRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQLFSAAADVL 680
            L  YV +E TGS +QFYDKFN R++I+ +LE L+ ++PS++N   W+    +     ++ F   ++ND  +LLDE L+ + E+  I+ E+ N A      R  ++++ +TRL  +     +    LA++ + +    S+ I A F+ PE++ R+ASMLNY L  LVGP+   L +KDP+ Y F PK LLK +  +Y++L+    Q+ F +A++ D RS+N  LF  A D+L
Sbjct:  619 LDFYVIVEKTGSSSQFYDKFNSRYSISIILEELYYKIPSYKNQLIWQS---QNNADFFVRFDARMLNDLTFLLDEGLSNLAEVHNIQNELDNRARGAPPTREEEDKELQTRLASASRQA-KSSCGLADKSMKLFEIYSKDIPAAFVTPEIVYRLASMLNYNLESLVGPKCGELKVKDPQSYSFNPKDLLKALTTVYINLSE---QSEFISAVAKDERSFNRNLFVRAVDIL 842          
BLAST of CX291463 vs. ExPASy Swiss-Prot
Match: UFD2_SCHPO (Ubiquitin conjugation factor E4 OS=Schizosaccharomyces pombe GN=ufd2 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.102e-30
Identity = 75/230 (32.61%), Postives = 130/230 (56.52%), Query Frame = 3
Query:    3 LKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGV--YLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWK 686
            +  Y++IE TG  TQFYDKFNIR  I E+   +W+ P++   + ++ +E++  +  ++ F+  ++ND+ YLLDE+L K+ E+  +++ +++         Q  QE      + E       +L NE + ML   +  I   F   E+++R+A+MLNY L  L GP+  +L ++DP KY F  K LL  I  +Y++L     +  F  A++ DGRSY++++F  A  ++ K
Sbjct:  673 MAFYIEIESTGQSTQFYDKFNIRFYICEVFRTIWKQPAY---FGKLEQEQKTNLPFFVKFVALMLNDATYLLDEALLKLTEIHNLQSLLADAIS-NSNSNQNVQESQSNLAAAERQASTYCQLGNETIFMLKLFTSSIPKAFCAVEIVDRLAAMLNYNLQALCGPKCSNLKVEDPTKYHFNAKTLLSIIFDVYLNLC---NEPAFVEAVAHDGRSYSKEIFERATSIMTK 895          
BLAST of CX291463 vs. ExPASy Swiss-Prot
Match: UBE4_CAEEL (Probable ubiquitin conjugation factor E4 OS=Caenorhabditis elegans GN=ufd-2 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.840e-24
Identity = 64/228 (28.07%), Postives = 121/228 (53.07%), Query Frame = 3
Query:    3 LKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWK 686
            +K Y D E  G    FY+KFN+R NI  +LE + +   ++  +  +A+E     ++ F+N +IND+ + +DESL+ +  +  +E +M+N  EW+    + R +   ++   +  ++  +  A  ++ +L   +     PF  P + ER+A+MLN+ L QL+G +   L +KDP  Y + P++ +  ++ IY+ L        F   I+ D R+Y+ + F  A + + K
Sbjct:  651 IKFYSDFEDNGD---FYEKFNVRGNIQYMLEKMEEDMFYKGKFMDMARECG-AEFIRFVNMVINDATWCIDESLSGLKSIHDVEKKMANKVEWDNTDQEIRNQDLGVYEEAKRKVKGWLGTAKSNLKLLLSITVNSPEPFRTPVLGERLAAMLNHNLSQLIGSKASELKVKDPRSYGWEPREFVSLLISIYLKL----NMPAFVKYIAYDERTYSPEFFHNAIECMRK 870          
The following BLAST results are available for this feature:
BLAST of CX291463 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
UBE4_ARATH1.735e-11789.61Probable ubiquitin conjugation factor E4 OS=Arabid... [more]
UBE4B_MOUSE1.112e-3937.07Ubiquitin conjugation factor E4 B OS=Mus musculus ... [more]
UBE4B_HUMAN1.112e-3937.07Ubiquitin conjugation factor E4 B OS=Homo sapiens ... [more]
UBE4A_RAT3.578e-3836.97Ubiquitin conjugation factor E4 A OS=Rattus norveg... [more]
UBE4A_BOVIN4.673e-3836.55Ubiquitin conjugation factor E4 A OS=Bos taurus GN... [more]
UBE4A_PONAB7.970e-3836.55Ubiquitin conjugation factor E4 A OS=Pongo abelii ... [more]
UBE4A_HUMAN7.970e-3836.55Ubiquitin conjugation factor E4 A OS=Homo sapiens ... [more]
UFD2_YEAST6.982e-3436.80Ubiquitin conjugation factor E4 OS=Saccharomyces c... [more]
UFD2_SCHPO2.102e-3032.61Ubiquitin conjugation factor E4 OS=Schizosaccharom... [more]
UBE4_CAEEL3.840e-2428.07Probable ubiquitin conjugation factor E4 OS=Caenor... [more]
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Properties
Property NameValue
Genbank descriptionC03008G10SK OF2 Citrus clementina cDNA clone C03008G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291463 ID=CX291463; Name=CX291463; organism=Citrus clementina; type=EST; length=696bp
TATTGAAGCTATATGTTGACATTGAGTTCACCGGTTCTCACACACAGTTC
TATGACAAGTTTAATATCCGCCATAATATTGCCGAACTTCTTGAGTACCT
ATGGCAGGTCCCAAGTCACCGAAATGCTTGGAGGCAGATTGCCAAGGAAG
AGGAAAAGGGTGTTTATCTGAATTTCTTAAATTTCCTGATCAATGATAGT
ATTTATCTTCTTGATGAAAGTCTCAACAAAATTCTTGAACTCAAAGTGAT
TGAAGCTGAGATGTCAAATACAGCAGAATGGGAGCGTAGACCAGCTCAAG
AAAGACAGGAGAGAACTCGGCTTTTCCACTCGCAGGAGAATATTATAAGA
ATTGATATGAAATTGGCTAACGAAGATGTCAGCATGCTGGCATTCACATC
AGAGCAGATTGTGGCTCCTTTCCTACTCCCTGAGATGATTGAAAGAGTGG
CCAGTATGCTCAATTATTTTCTATTACAACTTGTTGGCCCCCAGAGAAAA
TCTCTTACTCTTAAAGACCCTGAAAAGTACGAATTTCGCCCAAAGCAGTT
GCTGAAGCAGATTGTGTGCATATATGTCCATTTGGCAAGAGGTGATACGC
AAAACTTATTTCCAGCTGCCATCTCCAGTGATGGTCGTTCGTACAACGAG
CAGTTGTTTAGTGCTGCAGCAGATGTACTGTGGAAAATTGGTGAAG
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