CX291476

Overview
NameCX291476
Unique NameCX291476
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length212
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15444 contig Ccv1_Contig15444:379..590. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291476 vs. ExPASy Swiss-Prot
Match: RBP1B_ARATH (Ran-binding protein 1 homolog b OS=Arabidopsis thaliana GN=RANBP1B PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 1.106e-22
Identity = 54/69 (78.26%), Postives = 58/69 (84.06%), Query Frame = 3
Query:    3 RFDKDGNQWKERGAGTVKLLKHKVTDKARLVMRQSKTLKI*ANHLVLPMMSVQEHAGNDKSPVPTAADY 209
            RFDKDG+QWKERGAGTVK LKH+V+ K RLVMRQSKTLKI ANHLV   MSVQEHAGNDKS V  A D+
Sbjct:   60 RFDKDGSQWKERGAGTVKFLKHRVSGKIRLVMRQSKTLKICANHLVGSGMSVQEHAGNDKSCVWHARDF 128          
BLAST of CX291476 vs. ExPASy Swiss-Prot
Match: RBP1C_ARATH (Ran-binding protein 1 homolog c OS=Arabidopsis thaliana GN=RANBP1C PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.445e-22
Identity = 52/69 (75.36%), Postives = 58/69 (84.06%), Query Frame = 3
Query:    3 RFDKDGNQWKERGAGTVKLLKHKVTDKARLVMRQSKTLKI*ANHLVLPMMSVQEHAGNDKSPVPTAADY 209
            RFDK+GNQWKERGAGTVKLLKHK T K RLVMRQSKTLKI ANHL+   MSVQEH+GN+KS +  A D+
Sbjct:   57 RFDKEGNQWKERGAGTVKLLKHKETGKVRLVMRQSKTLKICANHLISSGMSVQEHSGNEKSCLWHATDF 125          
BLAST of CX291476 vs. ExPASy Swiss-Prot
Match: RBP1A_ARATH (Ran-binding protein 1 homolog a OS=Arabidopsis thaliana GN=RANBP1A PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.087e-21
Identity = 52/69 (75.36%), Postives = 54/69 (78.26%), Query Frame = 3
Query:    3 RFDKDGNQWKERGAGTVKLLKHKVTDKARLVMRQSKTLKI*ANHLVLPMMSVQEHAGNDKSPVPTAADY 209
            RFDKD NQWKERGAGTVK LKHK T K RLVMRQSKTLKI ANH V   MSVQEH GN+KS V  A D+
Sbjct:   58 RFDKDANQWKERGAGTVKFLKHKNTGKIRLVMRQSKTLKICANHFVKSGMSVQEHVGNEKSCVWHARDF 126          
BLAST of CX291476 vs. ExPASy Swiss-Prot
Match: RANG_SCHPO (Ran-specific GTPase-activating protein 1 OS=Schizosaccharomyces pombe GN=sbp1 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.811e-15
Identity = 38/67 (56.72%), Postives = 49/67 (73.13%), Query Frame = 3
Query:    3 RFDKDGNQWKERGAGTVKLLKHKVTDKARLVMRQSKTLKI*ANHLVLPMMSVQEHAGNDKSPVPTAA 203
            RFDK  ++WKERG G  +LLKHK T K RLVMR+ KTLK+ ANHL++P M +  + G+D+S V T A
Sbjct:  105 RFDKAASEWKERGTGDARLLKHKETGKTRLVMRRDKTLKVCANHLLMPEMKLTPNVGSDRSWVWTVA 171          
BLAST of CX291476 vs. ExPASy Swiss-Prot
Match: RBP2_MOUSE (E3 SUMO-protein ligase RANBP2 OS=Mus musculus GN=Ranbp2 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.091e-13
Identity = 35/69 (50.72%), Postives = 48/69 (69.57%), Query Frame = 3
Query:    3 RFDKDGNQWKERGAGTVKLLKHKVTDKARLVMRQSKTLKI*ANHLVLPMMSVQEHAGNDKSPVPTAADY 209
            RFD +  +WKERG G VK+L+HK + K RL+MR+ + LKI ANH + P M +  +AG+D+S V  A DY
Sbjct: 1197 RFDGESKEWKERGIGNVKILRHKTSGKIRLLMRREQVLKICANHYISPDMKLTPNAGSDRSFVWHALDY 1265          
BLAST of CX291476 vs. ExPASy Swiss-Prot
Match: RBP2_HUMAN (E3 SUMO-protein ligase RANBP2 OS=Homo sapiens GN=RANBP2 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.091e-13
Identity = 35/69 (50.72%), Postives = 48/69 (69.57%), Query Frame = 3
Query:    3 RFDKDGNQWKERGAGTVKLLKHKVTDKARLVMRQSKTLKI*ANHLVLPMMSVQEHAGNDKSPVPTAADY 209
            RFD +  +WKERG G VK+L+HK + K RL+MR+ + LKI ANH + P M +  +AG+D+S V  A DY
Sbjct: 1203 RFDVESKEWKERGIGNVKILRHKTSGKIRLLMRREQVLKICANHYISPDMKLTPNAGSDRSFVWHALDY 1271          
BLAST of CX291476 vs. ExPASy Swiss-Prot
Match: YRB1_YEAST (Ran-specific GTPase-activating protein 1 OS=Saccharomyces cerevisiae GN=YRB1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.038e-12
Identity = 31/61 (50.82%), Postives = 45/61 (73.77%), Query Frame = 3
Query:    3 RFDKDGNQWKERGAGTVKLLKHKVTDKARLVMRQSKTLKI*ANHLVLPMMSVQEHAGNDKS 185
            RFD D  +WKERG G  K LK+K T+K R++MR+ KTLKI ANH++ P  +++ + G+D+S
Sbjct:   95 RFDADAKEWKERGTGDCKFLKNKKTNKVRILMRRDKTLKICANHIIAPEYTLKPNVGSDRS 155          
BLAST of CX291476 vs. ExPASy Swiss-Prot
Match: RANG_MOUSE (Ran-specific GTPase-activating protein OS=Mus musculus GN=Ranbp1 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 3.944e-12
Identity = 36/68 (52.94%), Postives = 48/68 (70.59%), Query Frame = 3
Query:    9 DKDGNQWKERGAGTVKLLKHKVTDKARLVMRQSKTLKI*ANHLVLPMMSVQEHAGNDKSPV-PTAADY 209
            + D  +WKERG G VKLLKHK     RL+MR+ KTLKI ANH + PMM ++ +AG+D++ V  T AD+
Sbjct:   61 ENDLPEWKERGTGDVKLLKHKEKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADF 128          
BLAST of CX291476 vs. ExPASy Swiss-Prot
Match: RANG_HUMAN (Ran-specific GTPase-activating protein OS=Homo sapiens GN=RANBP1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.944e-12
Identity = 36/68 (52.94%), Postives = 48/68 (70.59%), Query Frame = 3
Query:    9 DKDGNQWKERGAGTVKLLKHKVTDKARLVMRQSKTLKI*ANHLVLPMMSVQEHAGNDKSPV-PTAADY 209
            + D  +WKERG G VKLLKHK     RL+MR+ KTLKI ANH + PMM ++ +AG+D++ V  T AD+
Sbjct:   61 ENDLPEWKERGTGDVKLLKHKEKGAIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADF 128          
BLAST of CX291476 vs. ExPASy Swiss-Prot
Match: RANG_BOVIN (Ran-specific GTPase-activating protein OS=Bos taurus GN=RANBP1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.944e-12
Identity = 36/68 (52.94%), Postives = 48/68 (70.59%), Query Frame = 3
Query:    9 DKDGNQWKERGAGTVKLLKHKVTDKARLVMRQSKTLKI*ANHLVLPMMSVQEHAGNDKSPV-PTAADY 209
            + D  +WKERG G VKLLKHK     RL+MR+ KTLKI ANH + PMM ++ +AG+D++ V  T AD+
Sbjct:   61 ENDLPEWKERGTGDVKLLKHKEKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADF 128          
The following BLAST results are available for this feature:
BLAST of CX291476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
RBP1B_ARATH1.106e-2278.26Ran-binding protein 1 homolog b OS=Arabidopsis tha... [more]
RBP1C_ARATH1.445e-2275.36Ran-binding protein 1 homolog c OS=Arabidopsis tha... [more]
RBP1A_ARATH2.087e-2175.36Ran-binding protein 1 homolog a OS=Arabidopsis tha... [more]
RANG_SCHPO3.811e-1556.72Ran-specific GTPase-activating protein 1 OS=Schizo... [more]
RBP2_MOUSE2.091e-1350.72E3 SUMO-protein ligase RANBP2 OS=Mus musculus GN=R... [more]
RBP2_HUMAN2.091e-1350.72E3 SUMO-protein ligase RANBP2 OS=Homo sapiens GN=R... [more]
YRB1_YEAST1.038e-1250.82Ran-specific GTPase-activating protein 1 OS=Saccha... [more]
RANG_MOUSE3.944e-1252.94Ran-specific GTPase-activating protein OS=Mus musc... [more]
RANG_HUMAN3.944e-1252.94Ran-specific GTPase-activating protein OS=Homo sap... [more]
RANG_BOVIN3.944e-1252.94Ran-specific GTPase-activating protein OS=Bos taur... [more]

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Properties
Property NameValue
Genbank descriptionC03009B04SK OF2 Citrus clementina cDNA clone C03009B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291476 ID=CX291476; Name=CX291476; organism=Citrus clementina; type=EST; length=212bp
ACCGTTTTGATAAGGACGGGAATCAGTGGAAAGAGAGAGGCGCCGGTACT
GTTAAGTTGTTGAAACATAAAGTGACCGACAAAGCTCGCCTCGTGATGAG
GCAATCTAAGACTCTCAAGATCTGAGCCAATCATCTCGTATTGCCGATGA
TGTCCGTGCAAGAGCATGCTGGAAATGATAAGTCGCCCGTGCCAACAGCT
GCTGACTATGAT
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