CX291485

Overview
NameCX291485
Unique NameCX291485
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length627
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14298 contig Ccv1_Contig14298:1196..1822. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291485 vs. ExPASy Swiss-Prot
Match: CAPP4_ARATH (Phosphoenolpyruvate carboxylase 4 OS=Arabidopsis thaliana GN=PPC4 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.184e-47
Identity = 93/121 (76.86%), Postives = 110/121 (90.91%), Query Frame = 3
Query:    3 PFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLRDALLITVNGIAAGMRNTG 365
            PFFQST++LIEMVL KAD  + K YDE LVSE R+ LG ELR+EL+TTEKYVLV+SGHEKL ++N+SL++LI+SRLPYLN MNMLQVEILKRLR+D+DN+KLRDALLIT+NGIAAGMRNTG
Sbjct:  912 PFFQSTLELIEMVLAKADIPMTKHYDEQLVSEKRRGLGTELRKELMTTEKYVLVISGHEKLLQDNKSLKKLIDSRLPYLNAMNMLQVEILKRLRRDEDNNKLRDALLITINGIAAGMRNTG 1032          
BLAST of CX291485 vs. ExPASy Swiss-Prot
Match: CAPP2_CHLRE (Phosphoenolpyruvate carboxylase 2 OS=Chlamydomonas reinhardtii GN=Ppc2 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.829e-33
Identity = 71/122 (58.20%), Postives = 94/122 (77.05%), Query Frame = 3
Query:    3 PFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQE-LGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLRDALLITVNGIAAGMRNTG 365
            PFF ST+DLIEM+L K D  IA  Y+EVLV++  ++ LGAELR  L   +  +L V+GHE L  NN +L +LI  R P+++P+N+LQVE+L+RLRQD +N +LRDALLI++NGIAAGMRNTG
Sbjct: 1100 PFFGSTVDLIEMILAKTDPRIAALYEEVLVNDPEEKKLGAELRERLQRCQGAILKVTGHENLLSNNPTLSKLISMRSPFVDPINILQVEVLRRLRQDPNNMRLRDALLISINGIAAGMRNTG 1221          
BLAST of CX291485 vs. ExPASy Swiss-Prot
Match: CAPP_NITEC (Phosphoenolpyruvate carboxylase OS=Nitrosomonas eutropha (strain C91) GN=ppc PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.318e-22
Identity = 53/122 (43.44%), Postives = 82/122 (67.21%), Query Frame = 3
Query:    3 PFFQSTIDLIEMVLGKADTHIAKRYDEVLV-SESRQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLRDALLITVNGIAAGMRNTG 365
            PFFQ+ +  ++MVL K+D  IA RY E++  SE RQ +   +R E     K++  ++GH +L ++N +L R I  R PY++PMN LQVE+L+R R  DD+  +R A+ +T+NG+A G+RN+G
Sbjct:  812 PFFQTLLSNMDMVLAKSDLGIASRYAELVTDSELRQYVFTAIRTEWELCVKWLFAITGHTELLQDNPTLARSIRIRTPYIDPMNHLQVELLRRYRSGDDDDAIRRAIHLTINGVATGLRNSG 933          
BLAST of CX291485 vs. ExPASy Swiss-Prot
Match: CAPP_MARMS (Phosphoenolpyruvate carboxylase OS=Marinomonas sp. (strain MWYL1) GN=ppc PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.318e-22
Identity = 52/121 (42.98%), Postives = 86/121 (71.07%), Query Frame = 3
Query:    3 PFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLRDALLITVNGIAAGMRNTG 365
            PFF + +D+++MVL KA+  IA+ Y++ LV E  Q LG  LR +L    + V ++   E+L E+N+++R+ I+ R PY++P++ LQ E+L R R+D++N ++  AL+IT+ GIA+GM+NTG
Sbjct:  756 PFFGAYLDMLDMVLAKAEPEIAEYYEKRLVGEELQGLGRLLRGKLKQVSELVKMLKKQERLIEDNKTIRQSIDVRNPYIDPLHYLQAELLYRSRKDEENAEVNKALMITMAGIASGMQNTG 876          
BLAST of CX291485 vs. ExPASy Swiss-Prot
Match: CAPP_ALCBS (Phosphoenolpyruvate carboxylase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=ppc PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.544e-22
Identity = 53/123 (43.09%), Postives = 76/123 (61.79%), Query Frame = 3
Query:    3 PFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESR--QELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLRDALLITVNGIAAGMRNTG 365
            PFFQ  +D++EMVL K+D  +A  Y+E L  +      LG  LR  L  T   +  ++G E L +NN  +R  I  R PY +P+++LQ E++ RLRQ D +  L  AL++T+ GIAAG+RNTG
Sbjct:  766 PFFQGVVDMLEMVLAKSDLRVAAWYEERLAGDDPGLMRLGEVLRERLTATVSALSALTGREDLLDNNPVMRWSIRVRDPYTDPLHLLQAELMARLRQQDGDETLESALMVTIAGIAAGLRNTG 888          
BLAST of CX291485 vs. ExPASy Swiss-Prot
Match: CAPP_NITEU (Phosphoenolpyruvate carboxylase OS=Nitrosomonas europaea GN=ppc PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.234e-20
Identity = 48/122 (39.34%), Postives = 80/122 (65.57%), Query Frame = 3
Query:    3 PFFQSTIDLIEMVLGKADTHIAKRYDEVLVS-ESRQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLRDALLITVNGIAAGMRNTG 365
            PF Q+ +  ++MVL K+D  IA RY E++   E RQ +   +R E     K++  ++G+ +L ++N +L R I  R PY++P+N LQ+E+L+R R  DD+  +R A+ +T+NG+A G+RN+G
Sbjct:  812 PFLQTLLSNMDMVLSKSDLGIASRYAELVTDPELRQSVFTSIRTEWELCMKWLFAITGYSELLQDNPTLARSIRIRTPYIDPLNHLQIELLRRYRSGDDDDTVRRAIHLTINGVATGLRNSG 933          
BLAST of CX291485 vs. ExPASy Swiss-Prot
Match: CAPP_PSEHT (Phosphoenolpyruvate carboxylase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=ppc PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.590e-20
Identity = 51/123 (41.46%), Postives = 79/123 (64.23%), Query Frame = 3
Query:    3 PFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHK--LRDALLITVNGIAAGMRNTG 365
            PFF+S ++++EMV  KAD+ +++ YD  LV +  + LG  LR+EL      V  +S  + L  +   ++  I  R PY +P+N+LQVE+L+R R  D+  +  + +AL+IT+ GIAAGMRNTG
Sbjct:  759 PFFRSRLEMLEMVFSKADSWLSEHYDNALVEDMYKPLGVTLRKELAEAISLVQSLSPQKSLLADQPWIKESIALRNPYTDPLNVLQVELLRRARSSDNGSEGDIDNALMITMTGIAAGMRNTG 881          
BLAST of CX291485 vs. ExPASy Swiss-Prot
Match: CAPP_PSEU5 (Phosphoenolpyruvate carboxylase OS=Pseudomonas stutzeri (strain A1501) GN=ppc PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.044e-19
Identity = 53/123 (43.09%), Postives = 76/123 (61.79%), Query Frame = 3
Query:    3 PFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEIL--KRLRQDDDNHKLRDALLITVNGIAAGMRNTG 365
            PFF + ID++EMVL KAD  IA+RYDE LV      LG++LR  L    + VL ++G   L +++   +     R  YL+P++++Q+E+L   R RQ      L  ALL++V GIAAG+RNTG
Sbjct:  757 PFFSTRIDMLEMVLAKADADIARRYDERLVQPELLSLGSDLRDRLSQVIEAVLSLTGQSDLLDHSPKTQEAFSLRNTYLDPLHLMQIELLARSRQRQGPAESPLEQALLVSVAGIAAGLRNTG 879          
BLAST of CX291485 vs. ExPASy Swiss-Prot
Match: CAPP_NOCFA (Phosphoenolpyruvate carboxylase OS=Nocardia farcinica GN=ppc PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.044e-19
Identity = 46/122 (37.70%), Postives = 78/122 (63.93%), Query Frame = 3
Query:    3 PFFQSTIDLIEMVLGKADTHIAKRYDEVLVSES-RQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLRDALLITVNGIAAGMRNTG 365
            PFF++ +  +  V+ K+D  IA RY E++   + R ++   +R E   T +    ++GH++L  +NRSL   I +R PYL P+N +QVE+L+RLR  DD+  ++  +L+T+NG+A  +RN+G
Sbjct:  802 PFFRTVLSNLAQVMAKSDLDIAARYAELVDDAALRDQIFGMIREEHARTLRMHAAITGHDQLLADNRSLAESIHNRFPYLEPLNQMQVELLRRLRSGDDSELVKRGILLTMNGLATALRNSG 923          
BLAST of CX291485 vs. ExPASy Swiss-Prot
Match: CAPP_PSEMY (Phosphoenolpyruvate carboxylase OS=Pseudomonas mendocina (strain ymp) GN=ppc PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.327e-19
Identity = 56/123 (45.53%), Postives = 76/123 (61.79%), Query Frame = 3
Query:    3 PFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILK--RLRQDDDNHKLRDALLITVNGIAAGMRNTG 365
            PFF++ ID++EMVL KAD  IA  YD+ LV  + Q LGA+LR  L      VL ++G  +L  ++      I  R  YL+P+++LQ E+L   RLRQ      L  ALL++V GIAAG+RNTG
Sbjct:  756 PFFRTRIDMLEMVLAKADASIAALYDQRLVEPALQPLGAQLRDLLSQACAAVLELTGQSRLLAHSPETLESISVRNTYLDPLHLLQAELLARCRLRQQAPESPLEQALLVSVAGIAAGLRNTG 878          
The following BLAST results are available for this feature:
BLAST of CX291485 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 221
Match NameE-valueIdentityDescription
CAPP4_ARATH1.184e-4776.86Phosphoenolpyruvate carboxylase 4 OS=Arabidopsis t... [more]
CAPP2_CHLRE4.829e-3358.20Phosphoenolpyruvate carboxylase 2 OS=Chlamydomonas... [more]
CAPP_NITEC1.318e-2243.44Phosphoenolpyruvate carboxylase OS=Nitrosomonas eu... [more]
CAPP_MARMS1.318e-2242.98Phosphoenolpyruvate carboxylase OS=Marinomonas sp.... [more]
CAPP_ALCBS8.544e-2243.09Phosphoenolpyruvate carboxylase OS=Alcanivorax bor... [more]
CAPP_NITEU1.234e-2039.34Phosphoenolpyruvate carboxylase OS=Nitrosomonas eu... [more]
CAPP_PSEHT3.590e-2041.46Phosphoenolpyruvate carboxylase OS=Pseudoalteromon... [more]
CAPP_PSEU51.044e-1943.09Phosphoenolpyruvate carboxylase OS=Pseudomonas stu... [more]
CAPP_NOCFA1.044e-1937.70Phosphoenolpyruvate carboxylase OS=Nocardia farcin... [more]
CAPP_PSEMY2.327e-1945.53Phosphoenolpyruvate carboxylase OS=Pseudomonas men... [more]

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Properties
Property NameValue
Genbank descriptionC03009E02SK OF2 Citrus clementina cDNA clone C03009E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291485 ID=CX291485; Name=CX291485; organism=Citrus clementina; type=EST; length=627bp
GGCCCTTTTTCCAGTCTACCATAGATCTCATAGAGATGGTTTTAGGGAAG
GCAGACACTCATATAGCCAAGCGCTATGATGAAGTCCTTGTTTCAGAGAG
TAGGCAAGAGCTTGGTGCTGAGCTAAGGAGGGAGCTCTTAACAACTGAGA
AGTACGTACTTGTGGTTAGTGGGCATGAGAAGCTATCTGAGAATAACCGC
AGTTTGAGGAGGCTGATTGAGAGCAGACTCCCATATCTCAATCCTATGAA
TATGTTGCAGGTGGAGATACTGAAGAGATTGAGACAGGATGATGATAACC
ATAAACTCAGAGATGCATTGCTCATCACTGTAAATGGAATAGCTGCTGGT
ATGAGGAACACAGGTTAAGTCAATTCGCTAGCTGGTTTAACACAGGTTAA
GTTTAAGTGGCTTGTATGCATATCGGGAAGACAGGTTTAGTAAAATCTCG
CTTGTCATCTGCTAATGTATGCCGGAAACTACTCCTATTTCTATTTTTGT
AATTTTCTTTTTAGAACTGCGGCTTGATGGTTGAGGTCACAACTAAATGT
ACTTGACATAGGCTGTGTGGAAAAATTTGTGGAAAATTTTCAGTTAGTAG
TATTTTTGTGAAAAAAAAAAAAAAAAA
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