CX291504

Overview
NameCX291504
Unique NameCX291504
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig366 contig Ccv1_Contig366:1..741. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291504 vs. ExPASy Swiss-Prot
Match: MTHR_ORYSJ (Probable methylenetetrahydrofolate reductase OS=Oryza sativa subsp. japonica GN=Os03g0815200 PE=2 SV=1)

HSP 1 Score: 413.69 bits (1062), Expect = 5.263e-115
Identity = 192/246 (78.05%), Postives = 214/246 (86.99%), Query Frame = 3
Query:    3 RSLPWRPPTHVFRVKEDVRPIFWANRPKSYLSRTVGWDQYPRGRWGDSRNPSYGALSDHQFMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLGKLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKVLPFITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKG*AFEIWVRSWASLY 740
            RSLPWRPPT+VFRVKEDVRPIFWANRPKSY+SRT+GWDQYP GRWGDSRNPSYGAL+D+QF RPR R KKL EEWAVP+KSVEDI E+F N+C GKL SSPWSELDGLQPETKII++QL KIN KGFLTINSQPAVNGERSDS+SVGWGGPGGYVYQKAYLEFFCS EKL  L++KSK  P +T++AVNK+G   +N+    VNAVTWGVFP KEI+QPTVVD ASF VWK  AFEIW + WA L+
Sbjct:  310 RSLPWRPPTNVFRVKEDVRPIFWANRPKSYISRTLGWDQYPHGRWGDSRNPSYGALTDYQFTRPRGRGKKLQEEWAVPVKSVEDINERFMNFCQGKLTSSPWSELDGLQPETKIIDDQLVKINQKGFLTINSQPAVNGERSDSTSVGWGGPGGYVYQKAYLEFFCSKEKLDQLIEKSKAFPSLTYIAVNKDGESFSNIPTNAVNAVTWGVFPGKEIVQPTVVDSASFMVWKDEAFEIWSKGWACLF 555          
BLAST of CX291504 vs. ExPASy Swiss-Prot
Match: MTHR2_ARATH (Methylenetetrahydrofolate reductase 2 OS=Arabidopsis thaliana GN=MTHFR2 PE=1 SV=2)

HSP 1 Score: 411.379 bits (1056), Expect = 2.612e-114
Identity = 192/246 (78.05%), Postives = 211/246 (85.77%), Query Frame = 3
Query:    3 RSLPWRPPTHVFRVKEDVRPIFWANRPKSYLSRTVGWDQYPRGRWGDSRNPSYGALSDHQFMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLGKLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKVLPFITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKG*AFEIWVRSWASLY 740
            RSLPWR P +VFR KEDVRPIFWANRPKSY+SRT GW+ +P+GRWGDSR+ SYGALSDHQF RPR+RDKKL +EW VPLKSVEDI EKFK  CLG L+SSPWSELDGLQPET+IINEQL K+N KGFLTINSQP+VN ERSDS +VGWGGP GYVYQKAYLEFFCS EKL A+V+K K LP IT+MAVNK   W +N  Q DVNAVTWGVFPAKEIIQPT+VDPASF VWK  AFE W RSWA+LY
Sbjct:  310 RSLPWRRPANVFRTKEDVRPIFWANRPKSYISRTKGWEDFPQGRWGDSRSASYGALSDHQFSRPRARDKKLQQEWVVPLKSVEDIQEKFKELCLGNLKSSPWSELDGLQPETRIINEQLIKVNSKGFLTINSQPSVNAERSDSPTVGWGGPVGYVYQKAYLEFFCSKEKLDAVVEKCKALPSITYMAVNKGEQWVSNTAQADVNAVTWGVFPAKEIIQPTIVDPASFNVWKDEAFETWSRSWANLY 555          
BLAST of CX291504 vs. ExPASy Swiss-Prot
Match: MTHR1_ARATH (Methylenetetrahydrofolate reductase 1 OS=Arabidopsis thaliana GN=MTHFR1 PE=1 SV=1)

HSP 1 Score: 406.757 bits (1044), Expect = 6.434e-113
Identity = 183/246 (74.39%), Postives = 209/246 (84.96%), Query Frame = 3
Query:    3 RSLPWRPPTHVFRVKEDVRPIFWANRPKSYLSRTVGWDQYPRGRWGDSRNPSYGALSDHQFMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLGKLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKVLPFITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKG*AFEIWVRSWASLY 740
            RSLPWR P +VFR KEDVRPIFWANRPKSY+SRT GW+ +P GRWGDS + +Y  LSD+QF RP+ RDKKL +EW VPLKS+ED+ EKFK  C+G L+SSPWSELDGLQPETKIINEQLGKIN  GFLTINSQP+VN  +SDS ++GWGGPGGYVYQKAYLEFFCS +KL  LV+KSK  P IT+MAVNK  NW +N  ++DVNAVTWGVFPAKE+IQPT+VDPASFKVWK  AFEIW RSWA+LY
Sbjct:  310 RSLPWRRPANVFRTKEDVRPIFWANRPKSYISRTKGWNDFPHGRWGDSHSAAYSTLSDYQFARPKGRDKKLQQEWVVPLKSIEDVQEKFKELCIGNLKSSPWSELDGLQPETKIINEQLGKINSNGFLTINSQPSVNAAKSDSPAIGWGGPGGYVYQKAYLEFFCSKDKLDTLVEKSKAFPSITYMAVNKSENWVSNTGESDVNAVTWGVFPAKEVIQPTIVDPASFKVWKDEAFEIWSRSWANLY 555          
BLAST of CX291504 vs. ExPASy Swiss-Prot
Match: MTHR1_MAIZE (Methylenetetrahydrofolate reductase 1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 404.06 bits (1037), Expect = 4.170e-112
Identity = 187/246 (76.02%), Postives = 208/246 (84.55%), Query Frame = 3
Query:    3 RSLPWRPPTHVFRVKEDVRPIFWANRPKSYLSRTVGWDQYPRGRWGDSRNPSYGALSDHQFMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLGKLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKVLPFITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKG*AFEIWVRSWASLY 740
            R LPWRP T+VFRVKEDVRPIFWANRPKSYL RT+GWDQYP GRWGDSRNPSYGAL+DHQF RPR R KKL EEWAVPLKSVEDI E+F N+C GKL SSPWSELDGLQPETKII++QL  IN KGFLTINSQPAVNGE+SDS +VGWGGPGGYVYQKAYLEFFC+ EKL  L++K K  P +T++AVNK+G   +N++   VNAVTWGVFP KEIIQPTVVD ASF VWK  AFEIW R W  ++
Sbjct:  310 RPLPWRPATNVFRVKEDVRPIFWANRPKSYLKRTLGWDQYPHGRWGDSRNPSYGALTDHQFTRPRGRGKKLQEEWAVPLKSVEDISERFTNFCQGKLTSSPWSELDGLQPETKIIDDQLVNINQKGFLTINSQPAVNGEKSDSPTVGWGGPGGYVYQKAYLEFFCAKEKLDQLIEKIKAFPSLTYIAVNKDGETFSNISPNAVNAVTWGVFPGKEIIQPTVVDHASFMVWKDEAFEIWTRGWGCMF 555          
BLAST of CX291504 vs. ExPASy Swiss-Prot
Match: MTHR_HUMAN (Methylenetetrahydrofolate reductase OS=Homo sapiens GN=MTHFR PE=1 SV=3)

HSP 1 Score: 232.261 bits (591), Expect = 2.172e-60
Identity = 117/256 (45.70%), Postives = 158/256 (61.72%), Query Frame = 3
Query:    3 RSLPWRPPTHVFRVKEDVRPIFWANRPKSYLSRTVGWDQYPRGRWGDSRNPSYGALSDHQ--FMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLG-------KLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKVLPF-ITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKG*AFEIWVRSWASLY 740
            R LPW    H  R +EDVRPIFWA+RPKSY+ RT  WD++P GRWG+S +P++G L D+   +++ +S  ++L + W   L S E ++E F  Y  G       K+   PW++ + L  ET ++ E+L ++N +G LTINSQP +NG+ S    VGWG  GGYV+QKAYLEFF S E   AL+   K     + +  VN +G    N  +   NAVTWG+FP +EIIQPTVVDP SF  WK  AF +W+  W  LY
Sbjct:  345 RPLPWALSAHPKRREEDVRPIFWASRPKSYIYRTQEWDEFPNGRWGNSSSPAFGELKDYYLFYLKSKSPKEELLKMWGEELTSEESVFEVFVLYLSGEPNRNGHKVTCLPWND-EPLAAETSLLKEELLRVNRQGILTINSQPNINGKPSSDPIVGWGPSGGYVFQKAYLEFFTSRETAEALLQVLKKYELRVNYHLVNVKGENITNAPELQPNAVTWGIFPGREIIQPTVVDPVSFMFWKDEAFALWIERWGKLY 599          
BLAST of CX291504 vs. ExPASy Swiss-Prot
Match: MTHR_MACFA (Methylenetetrahydrofolate reductase OS=Macaca fascicularis GN=MTHFR PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 6.319e-60
Identity = 117/256 (45.70%), Postives = 157/256 (61.33%), Query Frame = 3
Query:    3 RSLPWRPPTHVFRVKEDVRPIFWANRPKSYLSRTVGWDQYPRGRWGDSRNPSYGALSDHQ--FMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLG-------KLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKVLPF-ITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKG*AFEIWVRSWASLY 740
            R LPW    H  R +EDVRPIFWA+RPKSY+ RT  WD++P GRWG+S +P++G L D+   +++ +S  + L + W   L S E ++E F  Y  G       K+   PW++ + L  ET ++ E+L ++N +G LTINSQP +NG+ S    VGWG  GGYV+QKAYLEFF S E   AL+   K     + +  VN +G    N  +   NAVTWG+FP +EIIQPTVVDP SF  WK  AF +W+  W  LY
Sbjct:  345 RPLPWALSAHPKRREEDVRPIFWASRPKSYIYRTQEWDEFPNGRWGNSSSPAFGELKDYYLFYLKSKSPRELLLKMWGEELTSEESVFEVFVLYLSGEPNRNGHKVTCLPWND-EPLAAETSLLKEELLRVNRQGILTINSQPNINGKPSSDPVVGWGPSGGYVFQKAYLEFFTSRETAEALLQVLKKYELRVNYHLVNVKGENITNAPELQPNAVTWGIFPGREIIQPTVVDPISFMFWKDEAFALWIEQWGKLY 599          
BLAST of CX291504 vs. ExPASy Swiss-Prot
Match: MTHR_MOUSE (Methylenetetrahydrofolate reductase OS=Mus musculus GN=Mthfr PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.408e-59
Identity = 114/256 (44.53%), Postives = 159/256 (62.11%), Query Frame = 3
Query:    3 RSLPWRPPTHVFRVKEDVRPIFWANRPKSYLSRTVGWDQYPRGRWGDSRNPSYGALSDHQ--FMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLG-------KLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKVLPF-ITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKG*AFEIWVRSWASLY 740
            R LPW    H  R +EDVRPIFWA+RPKSY+ RT  WD++P GRWG+S +P++G L D+   +++ +S  ++L + W   L S E ++E F++Y  G       ++   PW++ + L  ET ++ E+L ++N  G LTINSQP +N + S    VGWG  GGYV+QKAYLEFF S E + AL+   K     + +  V+ +G    N  +   NAVTWG+FP +EIIQPTVVDP SF  WK  AF +W+  W  LY
Sbjct:  344 RPLPWALSAHPKRREEDVRPIFWASRPKSYIYRTQDWDEFPNGRWGNSSSPAFGELKDYYLFYLKSKSPREELLKMWGEELTSEESVFEVFEHYLSGEPNRHGYRVTCLPWND-EPLAAETSLMKEELLRVNRLGILTINSQPNINAKPSSDPVVGWGPSGGYVFQKAYLEFFTSRETVEALLQVLKTYELRVNYHIVDVKGENITNAPELQPNAVTWGIFPGREIIQPTVVDPISFMFWKDEAFALWIEQWGKLY 598          
BLAST of CX291504 vs. ExPASy Swiss-Prot
Match: MTHR_BOVIN (Methylenetetrahydrofolate reductase OS=Bos taurus GN=MTHFR PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.838e-59
Identity = 114/256 (44.53%), Postives = 159/256 (62.11%), Query Frame = 3
Query:    3 RSLPWRPPTHVFRVKEDVRPIFWANRPKSYLSRTVGWDQYPRGRWGDSRNPSYGALSDHQ--FMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLG-------KLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKVLPF-ITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKG*AFEIWVRSWASLY 740
            R LPW    H  R  EDVRPIFWA+RPKSY+ RT  WD++P GRWG+S +P++G L D+   +++ +S  ++L + W   L S E +++ F ++  G       K+   PW++ + L  ET ++ E+L ++N +G LTINSQP +NG+ S    VGWG  GGYV+QKAYLEFF S E + AL+   K     + +  V+ +G    N  +   NAVTWG+FP +EIIQPTVVDP SF  WK  AF +W+  W  LY
Sbjct:  344 RPLPWALSAHPKRRVEDVRPIFWASRPKSYIYRTQEWDEFPNGRWGNSSSPAFGELKDYYLFYLKSKSPKEELLKMWGEELTSEESVFQVFAHHLSGEPNQNGYKVTCLPWND-EPLAAETSLMKEELLRVNRRGILTINSQPNINGKPSSDPIVGWGPSGGYVFQKAYLEFFTSRETVEALLQVLKKYELRVNYHIVDVKGENITNAPELQPNAVTWGIFPGREIIQPTVVDPVSFMFWKDEAFALWIEQWGKLY 598          
BLAST of CX291504 vs. ExPASy Swiss-Prot
Match: MTHR_CAEEL (Probable methylenetetrahydrofolate reductase OS=Caenorhabditis elegans GN=C06A8.1 PE=1 SV=2)

HSP 1 Score: 210.305 bits (534), Expect = 8.838e-54
Identity = 112/262 (42.75%), Postives = 158/262 (60.31%), Query Frame = 3
Query:    3 RSLPWRPPT-HVFRVKEDVRPIFWANRPKSYLSRTVGWDQYPRGRWGDSRNPSYGALSDHQFMR---PRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLG-------KLRSSPWSELD-GLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPE---KLTALVDKSKVLPFITFMAVNKEGNW-KANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKG*AFEIWVRSWASLY 740
            R  PW+  + H  R  E VRPI+W+ RP+SY++RT  WDQ+P GRWG+S +P++G +S +        R+ D +L   +   ++S ED+   F NY          K+   PW+E + G+QPET +I+EQL   N  G LT+NSQP+VNG  S    VGWG PGGY YQKAYLE F + E   KL  ++++   +  + + A+NK+  + K N  +T   AVTWGVFP  EI QPTVVDP SF+ W+  A+++W+  W   Y
Sbjct:  358 RVFPWKNRSQHPIRCLESVRPIYWSFRPRSYITRTRDWDQFPNGRWGNSSSPAFGDVSSYYLSNLTTVRNADDRL-AMFGANIESFEDVKRVFINYITQAPNADGVKVTVLPWTEAETGVQPETSLISEQLVWCNENGILTVNSQPSVNGAPSTDPLVGWGKPGGYCYQKAYLECFMTAELSDKLIQIIEREFPVR-VNYHAINKDSTFDKTNSEETTPIAVTWGVFPGSEIAQPTVVDPLSFRAWRDEAYQMWMAQWGDFY 617          
BLAST of CX291504 vs. ExPASy Swiss-Prot
Match: MTHR1_SCHPO (Methylenetetrahydrofolate reductase 1 OS=Schizosaccharomyces pombe GN=met9 PE=1 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 7.481e-53
Identity = 106/234 (45.30%), Postives = 141/234 (60.26%), Query Frame = 3
Query:   39 RVKEDVRPIFWANRPKSYLSRTVGWDQYPRGRWGDSRNPSYGALSDHQFMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLGKLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKVLPFITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKG*AFEIWVRSWASLY 740
            R+ E VRPIFW  R +SY+SRT  WD+ P GRWGDSR+P++G     ++   R   K++   W  P KS  +I + F  YC  K+ S PWS+L  +  E  +I +QL  +N   FLTINSQPA+NGE+S     GWG P GYV+QK Y+EFF  P  L  L +  K L  +++   NK G+   N      NAVTWGVFP +EIIQPT+V+  SF  WK  A+ + +  WA+ Y
Sbjct:  318 RINEGVRPIFWRTRNESYVSRTDQWDELPHGRWGDSRSPAFGEFDAIRYGL-RMSPKEITTSWGSP-KSYSEIGDLFARYCEKKISSLPWSDLP-ISDEADLIRDQLLSMNRNAFLTINSQPALNGEKSSHPVFGWGPPNGYVFQKPYVEFFVHPSLLNELKETVKKLNSVSYFVTNKNGDLDTNSQYEIPNAVTWGVFPNREIIQPTIVESTSFLAWKDEAYSLGM-EWANAY 547          
The following BLAST results are available for this feature:
BLAST of CX291504 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
MTHR_ORYSJ5.263e-11578.05Probable methylenetetrahydrofolate reductase OS=Or... [more]
MTHR2_ARATH2.612e-11478.05Methylenetetrahydrofolate reductase 2 OS=Arabidops... [more]
MTHR1_ARATH6.434e-11374.39Methylenetetrahydrofolate reductase 1 OS=Arabidops... [more]
MTHR1_MAIZE4.170e-11276.02Methylenetetrahydrofolate reductase 1 OS=Zea mays ... [more]
MTHR_HUMAN2.172e-6045.70Methylenetetrahydrofolate reductase OS=Homo sapien... [more]
MTHR_MACFA6.319e-6045.70Methylenetetrahydrofolate reductase OS=Macaca fasc... [more]
MTHR_MOUSE1.408e-5944.53Methylenetetrahydrofolate reductase OS=Mus musculu... [more]
MTHR_BOVIN1.838e-5944.53Methylenetetrahydrofolate reductase OS=Bos taurus ... [more]
MTHR_CAEEL8.838e-5442.75Probable methylenetetrahydrofolate reductase OS=Ca... [more]
MTHR1_SCHPO7.481e-5345.30Methylenetetrahydrofolate reductase 1 OS=Schizosac... [more]

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Properties
Property NameValue
Genbank descriptionC03010A03SK OF2 Citrus clementina cDNA clone C03010A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291504 ID=CX291504; Name=CX291504; organism=Citrus clementina; type=EST; length=741bp
CCAGATCCTTACCCTGGAGACCCCCTACTCATGTTTTCCGCGTTAAGGAA
GATGTTCGTCCAATATTTTGGGCTAATCGTCCAAAGAGCTACTTATCAAG
GACAGTTGGTTGGGACCAGTATCCACGTGGACGATGGGGTGATTCTCGTA
ACCCATCATATGGTGCTTTATCTGATCATCAGTTTATGCGGCCCCGTTCA
CGTGACAAGAAACTTCATGAAGAATGGGCTGTCCCCTTGAAAAGTGTTGA
AGATATCTATGAAAAATTTAAGAATTACTGCCTTGGGAAATTGAGAAGCA
GTCCTTGGTCAGAGTTAGACGGGCTTCAGCCAGAGACCAAAATCATAAAT
GAACAGCTTGGAAAGATCAATGTGAAAGGTTTCCTCACTATCAACAGCCA
GCCGGCAGTCAATGGTGAAAGATCCGATTCATCTTCTGTTGGTTGGGGTG
GGCCAGGAGGATATGTTTATCAGAAAGCATATCTAGAGTTTTTCTGCTCA
CCAGAGAAGTTGACTGCACTTGTTGACAAAAGCAAAGTTCTTCCATTCAT
AACCTTCATGGCTGTCAACAAAGAAGGGAACTGGAAAGCCAATGTTAATC
AAACTGATGTGAATGCCGTAACTTGGGGGGTCTTCCCAGCCAAGGAGATT
ATCCAACCGACTGTTGTTGACCCTGCCAGCTTCAAGGTGTGGAAAGGATG
AGCATTCGAAATTTGGGTCAGATCATGGGCTTCATTGTACC
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